Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ARR14(2)           <---------ARR14(2)        --------->YAB1      --------->ANAC58      --------->AtLEC2               <---------ZAT2                              ------>ZmHOX2a(1)      --------->ANAC58               --------->ZAT2                             --------->TOE1(3)      --------->ANAC46              ------>MYB46(1)    --------->MYB52(1)    --------->ARR14(2) -------->RAV1(1)                   ------>MYB83  <---------AHL20(2)         <---------ARR14(2) ->At4g35610             <---------ETT(1)        --------->AHL20(2)    ------->TEIL --At4g35610          --------->ARR14(2)      --------->YAB1   --------->MYB59  --------->TOE2(3)   ccacatacaagcaaaacctcacagtttccgacaaaaccaagctcagaattataaaatcaacgaataaggtctgaacccaaatcctcaactctctcaatct  27807900                <---------ZAT18             -------->HAHB4            --------->ICU4            <---------YAB1          --------->YAB1          <---------ICU4         --------->ICU4         <---------ATHB51            --------->ANAC58         <---------ATHB12       ------->GAMYB    --------->ANAC46           <---------MYB52(2)    --------->ANAC58           --------->MYB46(3)                                                ----    --------->ANAC58 --------->ANAC58--------->ANAC58                                     <----------ID1  <------ZmHOX2a(1)  --------->ANAC58----------->GT1                               ---------->DOF2   tgtaggacgcaataatgatgcgctcgaaattcaacgaacaagaaaaaaaaaaaaacttcgatttcatacaatttgagtctcagagaaaaggagagacaaa  27808000                             <---------ANAC55(2)                             --------->ANAC58                        ==========================HOX2a_HOX2a                     <-----------RAV1(2)                  ------->GAMYB                                      ---------->DOF2                <                 <---------MYB55(2)  <---------ANAC46            <---------ANAC58                   <                 --------->MYB46(3)  <---------ANAC58            <---------ANAC46                   <                -------->P   --------->ANAC58            ---------->DOF2                      <------NtERF2               --------->MYB52(1)    <---------ANAC58   --------->AtMYB61                    ------>NtERF2           <-----------ARR10 --------->ANAC55(2)       --------->ANAC58                     ---------     <------ZmHOX2a(1)  <------ZmHOX2a(1)  ------>ZmHOX2a(2)     <---------ANAC58          --------->MYB46(3) ------>DOF2 <---------MYB52(2) --------->MYB52(1)     --------->ANAC58         ---------->DOF2------   aaagagaggagagaaactaaccaccaggagtaagtaatggagtgatcgagcttgagcaccaaagcgagcgtgaaagagaagagaaagcagtgagccaccg  27808100                                                                              --------->GLK1(1)                                                                              <---------GLK1(1)          --------->GLK1(1)                                                 <------ZmHOX2a(1)     <---------LBD16                                                      <---------TOE2(3)   <---------SPL7                                                        --------->YAB1 <---------------AtSPL3                                            --------->ANAC46 <---------------AtSPL8                                            --------->ANAC58 ---------ANAC58                                                   --------->ANAC55(2) ---------ANAC58                                                   <---------ANAC55(2) ---------ANAC46        ----------->RAV1(1)                        --------->ANAC58              ---- >DEAR3(1)<---------GLK1(1)                                       <---------LBD16           ------>NtERF2 --->DEAR3(1)   <---------ALFIN1      <----------DOF2       <-----------------AGL1    <----------DOF2   aggcttgtacggatttcaacactctccaacagttcatcgtctttcttctctctgtttctcttccctactacggaataaggatttctagctttgcctccat  27808200                                       <-------GAMYB                                      --------->MYB52(2)                                      <------MYB83                                      --------->MYB55(2)                                      <------MYB46(1)                                      <---------MYB46(3)                                    <--------P                                   <-------GAMYB                                   <---------ANAC58                                   <---------ANAC58                                  --------->ATHB12                                  --------->MYB52(2)                                  --------->MYB55(2)                                  <------MYB46(1)                                  <---------DEAR3(2)                                  <------MYB83                                  <---------MYB46(3)                                 <---------AtMYB61                                 --------->MYB111(1)                                 <---------MYB46(3)                                <--------P                               <---------ANAC58       ------>NtERF2                              --------->ATHB12       --------->DEAR3(1)                              --------->MYB55(2)   ------>NtERF2                              <------MYB46(1)      <---------ATERF1(1)          <----------DOF2                              <---------MYB46(3)  --------->RAP2.6(2)         <---------At4g35610               --------->WRKY45<---------ANAC58   --------->ANAC58            --------->At4g35610         ---------->ID1       <------MYB83        --------->ANAC46            <---------ZAT2     <----------DOF2      --------->ATHB12 <---------HSFB2a(2)   *TSS      <---------At4g35610 ----->ZAT2  <----------DOF2 <---------AtMYB61    --------->ANAC58     <-----------RAV1(1)<----------   gctcgctctttttctctttgactagagacgattggttggttggttagagaagacgccaccaagttgagagaaaatgctgcagctttgtgttttttcgatt  27808300                                            <-----------GT1                                     <-----------GT1                               <---------MYB52(1)        <---------YAB1                 <----------DOF2   <-----------GT1      <---------TOE2(3)            ------>ZmHOX2a(1)<---------ANAC58  <----------DOF2                                <------     <---------ANAC58        <---------ANAC58  <---------DAG2<---------AHL20(2)             <-------- -GT1<---------ANAC58     <----------DOF2   <---------AHL20(2)   <-----------GT1         <----------DOF2   ccacagtgcttctccttcgctttcccctctttcgttttttctctatttacttttcatttatgtttattttctgtctaaaaccctctctcttcttttcttt  27808400                                                                                  -------------------                                                                                <---------AHL20(2)                                                                                --------->AHL20(2)                                                                               <---------MYB52(1)                                                                             --------------->AGL15                --------->TOE2(3)                  <---------WOX13(1)        <---------------AGL15              <-----------GT1                   <---------YAB1         <------------MYB.PH3(1)             <<<<<<<<<<GT-3b             ---------->DOF2             <-----------GT1 ----DOF2  <---------YAB1             --------->WOX13(1)             --------->MYB52(1) ----------------ANAC81             <---------ATHB12     <---------AHL20(2) ----------------->AGL3   ttttttttggattatttttcttaacaaaattttagaaaatcattcaagctctgattgttttaatttggagataaccgttccattaattgttagtatcgat  27808500                                                                                    <-----------HVH21                                                                                --------->MYB111(1)                                                                                --------->MYB111(2)                                                                                --------->MYB46(2)                                                                            <---------TOE2(3)                                                                          ---------->DOF2   ---------                                                    --------->ZAT14      <---------AHL20(2)--------->HSFB2a(1)                                                    <---------ZAT14      --------->AHL20(2)------>ZmHOX2a(2)                                                    <---------ZAT18  <---------AHL20(2)    <---------HSFB2a(1)                                                    --------->ZAT18  --------->AHL20(2)   <------ZmHOX2a(2)                                                   <---------ANAC58 <---------AHL20(1)   --------->ARR11(3)                                                   <---------ANAC58 --------->AHL20(2)   <---------ARR14(2)                                        <---------AHL20(2)          <---------AHL20(2)   --------->ARR14(2)                                       <---------AHL20(2)      --------->AHL20(2)<-------GAMYB                                       --------->AHL20(2)   --------->GLK1(1)   <---------MYB46(3)                           --------->ATHB12       <---------ZAT18   --------->AHL20(1)   <---------ARR11(3) -->WRI1                  <---------YAB1--------->AHL20(2)  <---------GLK1(1)   --------->MYB52(2)<--   gtaatttagcctagcctcttgatgtaatatgattagtctaaattaatgacattgcgcactggaaatcaaataaaattaaaggtagttgtcagatcgttcc  27808600                                                 <---------O2                                      <---------ANAC58                                      ----------->GT1                                      <---------ANAC58                                      <---------ANAC46                                  --------->MYB52(2)     --------->ZAT18                                  <---------MYB46(3)     <---------ZAT18                                <---------MYB52(1) --------->ALFIN1            --------->ZAT14    --------->TOE2(3) =======================bZIP_DOF            <---------ZAT14    --------->TOE1(3) <---------TGA1a          --------->ALFIN1            <---------ZAT18  <---------TOE2(3)   <---------bZIP60(2)    <---------ANAC55(1)      <---------AHL20(2)     <---------TOE1(3)   <---------ANAC58       <---------ANAC46     --------->AHL20(2)     --------->MYB52(1)   <---------ANAC46       <---------ANAC58  <---------ZAT6         --------->YAB1          --------->O2<----------DOF2   --------->MYB46(3) >KAN4(2)   --------->ZAT18------>ZmHOX2a(1)  ----------->HVH21--------->REM1(1) ---------->DOF2 -------MYB52(1)  XXXXXXXXXXXXXXXXXXXX>MIR869.1  <---------ANAC58       <---------ANAC58   cttagtattaaatgtgcactgtttcaatcctaacgttagttcgtgaatttgacgtggagcgcgcttcatctctggcgtgtaaccaaagctagacaagaga  27808700                                                 --------->AtLEC2                                            <---------ALFIN1                                         --------->ANAC46                                       <----                                       --------->YAB1                 <----------DOF2 <-----------GT1      --------->ZAT18                  <-----------GT1           ---------->DOF2 ---------->DOF2-----  --------->DAG2                    --------->YAB1      ----------->GT1  <---------HSFB2a(2)    <---- ---------->DOF2                   <---------AHL20(2)   <---------REM1(1)--------->HSFB2a(2)  -------   ggctaaagcgcattgaataaacagattacattgacatataatcacaacaccttgcaagttgtaacaacaaagcttttggaaataaaagttactactcaga  27808800  Previous    Next  AGI:  At1g73950.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G68820.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.2); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68014.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 27803491    to: 27808265    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73960.1    Description:  TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO68010.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ60124.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ61374.1); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase, N-terminal; (InterPro:IPR014782) Range:  from: 27808706    to: 27818107    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version