Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ICU4                                                                              =======================                                                                              ------>ZmHOX2a(2)    --                                                                              ----------->GT1     <--   --------->MYB52(1)                                                       <---------ARR11(3)   <---   ------>MYB46(1)                                  <-----------GT1         --------->ARR11(3)   ----   ------>MYB83                         --------->YAB1                <---------MYB46(3)        <---- <---------MYB111(2)                   --------->ICU4              --------->MYB52(1) <---------TOE2(3) <---------MYB46(2)              ---------->DOF2 --------------->AtSPL8 <---------MYB52(1)    <------ -------->ANAC46               --------->LBD16   <---------------AtSPL8<-----------HVH21 --------->GLK1(2)   tcaccaaactgtatttcactatgacttattttccgaaaagaatgatgaagtttagtaccatacatgaactagcggttagatcgtaattaagaatttgagg  27782400         <---------------AGL15                                              ----------->GT1         --------------->AGL15                                             --------->DAG2      <-----------GT1                                                     ---------->DOF2 ==HOX2a_HOX2a                                                         --------->YAB1 ------->YAB1                                                 <---------AHL20(1) ----ZmHOX2a(2)                                               --------->AHL20(1) ------ARR11(3)                                               <---------AHL20(2) ----->ARR11(3)     --------->MYB52(1)                        --------->AHL20(2) --ZmHOX2a(1)   <---------YAB1  --------->ZAT18              --------->AHL20(2)   <---------AHL20(2) ---TOE2(3)   --------->YAB1  --------->ZAT18      <---------MYB46(3)<---------TOE2(3)   atcatattttactatatcatgaaaacggagagagcgcaaaattacagacatattggttcaaaattttatttaagaataaagtatatatatggttctaatt  27782500                                                <---------AHL20(2)                                               --------->AHL20(1)                                               <---------AHL20(2)                                         <---------ANAC55(2)                                         --------->ANAC55(2)                                         --------->ANAC46                                         --------->ANAC55(1)                                         --------->ANAC58                                         --------->ANAC58                                         ----------->GT1                                        <-------TEIL--------->YAB1                                    <---------------AtSPL8            <---------ARR14(2)      <---------------AtSPL3      ----------->GT1            --------->ARR14(2)     ---------->DOF2 <---------YAB1                                 ---        --------->DAG2       --------->AHL20(2)<---------AHL20(1)                     ----------->GT1       ---------->DOF2       <---------AHL20(2)--------->AHL20(2)          ----------->GT1 ----------   tttcaaaaaaaaagtatatggttctaaacatttatttgaaagtacgtaatataatgaaaacaaaaattgtaaatttgaagtaaaaaactcgtgaaaagtc  27782600                                                                                               ------                                                                                               ------                                                                                               ------                              --------->AHL20(2)                                    --------->AHL20(2)                       <-------TEIL                                                 <---------AHL20(2)                       ------->TEIL                                                 --------->AHL20(1)                    --------->ANAC46                                               <---------AHL20(2)                    --------->ANAC58                                        XXXXXXXXXXXXXXXXXXXXX>MIR830*                    --------->ANAC58            <---------YAB1              --------->ANAC46 --------                   <---------------AtSPL8     <---------ICU4     <-----------GT1   <---------ATHB12                   --------------->AtSPL3     --------->YAB1--------->AHL20(2)     --------->AHL20(2) --->ZmHOX2a(1)    --------------->AtSPL8    --------->ICU4 <---------AHL20(2)     <---------ATHB51 >DOF2         --------->REM1(2)    <---------YAB1      <---------AHL20(2)<---------ALFIN1   --------   ctcattctaaaataccatgtacacgtacataataaactatgaatagaattatgagtttttatttatatttctatctccactccaaataatttagaccaca  27782700                                                         --------->bZIP60(2)                 --------->YAB1                          <---------bZIP60(1)                 <--------ATHB1                          --------->bZIP60(1)                 <---------ICU4                          --------->ANAC58                 -------->HAHB4                          --------->ANAC58                <---------ATHB51                         --------->ANAC46                <---------YAB1                   --------->GLK1(1)         --------->AHL20(2)                  --------->LBD16      --------->ANAC46     ----------->GT1                        --------->LBD16     <---------ALFIN1 --->ANAC58     --------->ICU4              <---------ANAC46    --------->ANAC58 --->ANAC46   --------->YAB1                <---------LBD16     --------->ANAC58 --->ANAC58 --------->AHL20(2)             <---------LBD16    <---------ALFIN1                    <-- ->AtMYB61 --------->YAB1  --------->AHL20(2)------>NtERF2------>NtERF2    <---------ARR14(2) ------- --->RAV1(1)--------->AHL20(1) ----------->GT1<------NtERF2 ----------->RAV1(1)               <------   caaggtaatgaaaaaataataattctgaaaaaaatgaaaaatactgccgggaaatcgagacgccacacacactagtgaattcgttgcaaaaccatatata  27782800                                                                                                  ---                                                                                                -----                                                                                               ------                                                                                              <------                                                                                  <---------REM1(1)                                                                            <---------MYB46(3)-------                                                                           <---------AtMYB61  -------          ---------->ID1                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------GT1                                                      --------->ANAC58          <------- -->AHL20(1)                           <---------At4g35610         --------->ANAC58         --------- ---AHL20(1)               *TSS       --------->ANAC46             --------->ANAC46       --------->At4g35610   ttacagtattttgttcttctcaaggcctctctctccatctcagcaactctctcactgtgtaatatacacacacaatggtggtcgatgtagagagccgaac  27782900                                    ----------->HVH21                                 <---------ANAC46                              --------->ALFIN1                             ------->PIF5                             ------->MYC2                             <-------MYC2                             <-------MYC3                             ------->MYC3                             <-------PIF5                            <---------ANAC58                        <------MYB46(1)                            <---------ANAC46                        <------MYB83                            <---------TGA1a                        <---------------AtSPL3                            <---------ANAC58                       <---------------AtSPL8                            --------->ALFIN1                       --------->MYB111(1)                            <------NtERF2                  ------->MYC3                          <---------ANAC46                 <-------MYC4                         <------NtERF2                     ------->PIF5                         --------->ATERF1(1)               <-------PIF5                        <---------ORA47(2)                 <-------MYC2                        <---------ATERF1(1)                ------->MYC4                        <---------RRTF1(1)                 <-------MYC3                        <---------DEAR4(2)                 ------->MYC2                        <---------ERF1                     <-------PIF4                        <---------RAP2.3(1)                ------->PIF4                        ------>NtERF2                     <---------TGA1a                        <---------RAP2.6(1)               <---------ANAC58     ----------->HVH21 <---------RRTF1(3)                 =================MYC_MYB    <-----------HVH21  <---------RRTF1(2)                 ===========================================bZIP_DOF   <---------ANAC58    <---------ATERF1(2)                <---------ANAC58   <---------ANAC58    --------->ATERF1(2)             <------ZmHOX2a(2) ------>LBD16          <---------DEAR3(1)<---------ANAC58 --------->ANAC55(2) ---->MYB46(3)         <---------DREB2C(2)            <---------ARR11(3)                       ====== --->SPL7              <---------RAP2.3(2)            --------->ARR11(3)                       ------ ---ARR14(2)           <---------RAP2.3(3)   <---------AtLEC2     <--------P              <----------DOF2 -->MYB52(1)           <---------RAP2.6(2)  <-------TEIL  <---------ANAC55(2)       ----------->TGA1 -->ARR14(2)          --------->ATERF1(1)<---------ANAC58 --------->TGA1a           ----------->HVH21 --SPL7 <-----------RAV1(2)------>NtERF2 <---------ANAC46------------>OsbHLH66 <---------At4g35610 >DEAR3(1) <------ZmHOX2a(1)===============================================MYC_MYB--------->At4g35610   cgcgagcgtgacaggagagaagatggcggcgcgtggctgtgatgcgtgcatgaagagatcacgtgctagttggtactgtccagccgatgacgctttccta  27783000                                                           <---------LBD16                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                         <-----------HVH21                                                       <-------MYC2                                                       ------->MYC2                       <---------At4g35610                     <---------ALFIN1                  ------->MYC3                       --------->At4g35610           --------->DEAR3(1)                          <-------MYC3                       <------NtERF2           --------->ANAC58                           <---------ANAC58                  --------->ANAC58           --------->ANAC58                          ------->TEIL                       --------->ANAC58          --------->ATERF1(1)                     <---------MYB52(2)                   --------->ATERF1(1)         <---------ATERF1(1)                 --------->ANAC58                    <------NtERF2        ----------->HVH21                    --------->ANAC58                   ------>NtERF2     --------->TOE1(2)                       --------->ANAC46                   <---------ATERF1(1)    <---------At4g35610          --------------->AGL15<---------ANAC58          --------->MYB52(1)    --------->At4g35610    --------->At4g35610    --------->ANAC58             --------->At1g77200    <---------ZAT2 <------ZmHOX2a(2)        --------->RAP2.6(3)                --------->DEAR3(1)    --------->ZAT2<---------ARR14(2)       <---------ARR14(2)                  ----------->HVH21 ---------->DOF2  --------->ARR14(2)       --------->ARR14(2)         --------->YAB1   --------->RAP2.6(3) =========================HOX2a_HOX2a      --------->MYB52(1)----------->GT1  --------->DEAR3(2)  --- >ZmHOX2a(1)------>NtERF2  <---------At4g35610    --------->ANAC58   <---------ATHB12 <---------ATERF1(1)   tgccaaagctgcgacgcctcgatccactcggctaaccatttagcgaaacggcacgaacgtgtccggttacaatcatcttcgccgacggagacggcagaca  27783100             <---------SPL7           <---------------AtSPL8       <---------DEAR3(2)        --------->DAG2   <---------TGA1a          <------ZmHOX2a(1)   --------->TGA1a         --------->LBD16   <---------bZIP60(1)   <-----------RAV1(2)                                                        -   --------->O2       --------->ARR14(2)                                   <---------MYB46(3)    <---   <---------O2--------->SPL7  ---------->DOF2   <------ZmHOX2a(1)  <---------HSFB2a(2)         <----   --------->bZIP60(1)<---------ARR14(2)  --------->ANAC58     <---------ANAC58                 -----   =======================================bZIP_DOF             <---------ANAC58                 ----- ------>MYB52(1)     <------ZmHOX2a(1)    --------->ANAC58   <---------ANAC46                   <----   aaacgacgtcggtatggtacgaaggattcaggagaaaggcgagaacgcctaggagcaagagttgtgcgtttgagaagttgttgcaaatcgagtcaaacga  27783200             <---------ANAC58             <---------ANAC58            --------->ZAT2            <---------ZAT2         --------->LBD16        <---------HSFB2a(2)                                                                       <--        --------->HSFB2a(2)                                                                <---------ANAC58        <---------ANAC46                                                               <---------ANAC55(2)       <---------LBD16                                                                 <---------ANAC55(1) ----->ZmHOX2a(1)                                                                      --------->ANAC55(2) ---ZmHOX2a(2)                       <----------DOF2              --------->TOE1(2)    <---------ANAC46 -----ARR11(3)                       <---------DAG2            --------->MYB52(1)      <---------ANAC58 ---->ARR14(2)  <------MYB83  <---------YAB1           --------->LBD16            <-----------RAV1(1) ---->ARR11(3)  <---------ANAC46    <---------ANAC58  <---------ANAC46    --------->GLK1(2)<---------ANAC58 -----ARR14(2)  <------MYB46(1)     <---------ANAC58------>ZmHOX2a(1) <------ZmHOX2a(1)<---------ANAC58   tcctcttgttccggagcttggtggagacgaagatgatggctttttctcgttctcctccgtagaagaaaccgaggagagtctgaattgttgcgtgcctgtt  27783300  Previous    Next  AGI:  At1g73870.1    Description:  zinc finger (B-box type) family protein. Identical to Zinc finger protein CONSTANS-LIKE 7 (COL7) [Arabidopsis Thaliana] (GB:Q9C9A9;GB:Q5XF76); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G25440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42139.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 27782827    to: 27784337    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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