Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------AHL20(1)                                                                         --------->AHL20(2)         -                                                                     <---------AHL20(2)            <-                                                                     --------->AHL20(2)          <---                                                                   --------->AHL20(2)            ----                                                                   <---------AHL20(2)            ----                                                                 --------->AHL20(2)             -----                                                               --------->AHL20(2)               <----                                         -------->ATHB1        <---------AHL20(2)            --------                                         <---------ICU4      <---------AHL20(2)         <---------AHL20(2)                                        --------->ICU4       --------->AHL20(2)         --------->AHL20(2)                                        <---------AHL20(2) <---------AHL20(2) --------->AHL20(1)<----                                        --------->AHL20(2) --------->AHL20(2)<---------AHL20(2) -----                                        <---------ATHB51 --------->AHL20(2)<---------AHL20(2)<-------                                <---------ATHB12         <---------AHL20(2)--------->AHL20(2)-------- ------->DOF2                 ------>MYB46(1)        --------->CCA1(2)   <---------AHL20(2)  <------- --->YAB1                   --------->TOE2(3)       --------->ARR11(3) --------->AHL20(2)   --------- ---YAB1                    <---------MYB59         <---------ARR11(3) <---------AHL20(2)   <-------- >YAB1         <---------YAB1 ------>MYB83    <---------ANAC55(2)<---------AHL20(2) <---------ANAC55(2)   taaagaacccctctcttattaatcttcaaacctaatcaacaaattattaagtgagatatatatatatatatatatatatatatattacatataaataaat  27690300         --------->LBD16 <---------AHL20(2) -------->AHL20(2) --------YAB1 ------ICU4 ----->YAB1                 <---------YAB1 ---->ATHB1                <---------AHL20(2) ---->AHL20(2)             <---------AHL20(1) -----AHL20(2)           <---------YAB1 ->AHL20(1)         ---------->ID1 -----ATHB51 <-----------ARR10                                            --------->ARR11(3) ---->ICU4   <---------ARR14(2)                    --------->ATERF1(1)    <---------ARR11(3) --AHL20(2)  --------->ARR11(3)                  <---------ANAC58        <---------At4g35610 ->AHL20(2)  <---------ARR11(3)                  <---------ANAC58       ------->TEIL                - --AHL20(1)  <---------ARR11(1)                 ---------->ID1 --------->AHL20(2)  <---------AHL20(2) >AHL20(2)   --------->ARR14(2)         ---------->ID1        <---------YAB1   <-----------------AGL3 -AHL20(2)  <---------CCA1(2)    <------------------------ANAC81<---------AHL20(2)--------->AHL20(2)<   tattatatatccccaaatcttcgtcttattatttttgtttttgtttttttgtcgtctccctcttattaaaaatgaagctctccattatatggattcagta  27690400            <---------ANAC58            <---------ANAC58            <---------ANAC46          <---------AHL20(2)          --------->ARR11(3)       <---------ICU4      <---------YAB1     <---------AHL20(2)     <---------AHL20(1)     --------->AHL20(2)    --------->YAB1   <---------YAB1 --------->ATHB51               --------->ANAC58                                                    - <--------HAHB4                 --------->ANAC46                                                   <- --------->YAB1           <-----------GT1                     --------->ZAT18                     --- <---------ICU4    ------>NtERF2--------->ANAC58    <---------ICU4    <---------ANAC58  --------->ARR14(2) -------->ATHB1   --------->ANAC58                  <---------AHL20(2)<---------ANAC55(2)   <-------- -------->ICU4    --------->ANAC58                 --------->AHL20(2) <---------ANAC58  <---------ARR14(2) ---------YAB1    --------->ANAC46                 <---------ATHB12   --------->ANAC55(2)   >>>>>>>>>   gaattattataatttcttggacgccatttttctcaccccaagttttccttctaataaatacgagtgagcaatgcgtaagtataaaaacccgatttgacta  27690500                                                         <---------At4g35610                                                         --------->At4g35610 <---------AHL20(2)                           --------->ANAC58                                     <- -------->YAB1                                --------->ANAC58    <------------AtMYB77            <-- --------AHL20(2)  --------->ZAT6           ---------->DOF2     <---------ARR14(2)     <-----------GT1 ------>AHL20(2) --------->YAB1           --------->AtMYB61     --------->ARR14(2)   <----------DOF2 ---GT1       --------->YAB1              ------->GAMYB  <---------LBD16      <----------DOF2  <----- >WRKY63  ---------->DOF2                --------->MYB46(3)    <------ZmHOX2a(1)   <-----------------   tataatattctcaaaagaataatactactaaatctgattttcaaccaaaagccaaattcagcggaggaactgtcgttttcctttcttctttacttcttca  27690600                                                                               <---------ANAC58                                --------->At4g35610                          <---------YAB1                             --------->At4g35610                          <---------AHL20(2)        -      ------>ZmHOX2a(1)    <---------ICU4                     --------->ARR14(2)                    - ---------DOF2             --------->YAB1                     <---------ARR14(2)                    < -------DAG2              --------->ICU4               ---------->DOF2   --------->AHL20(2)       --- ------GT1              --------->YAB1               *TSS     --------->ARR11(3)                 <--- -------ANAC81         <---------AHL20(2)--------->AHL20(2)  <------ZmHOX2a(1) <---------ANAC58 <----   cctttctcctatttcatcttaacatataatcatcagaagaaaaaaaaattctaaaacaaaagaggaacttgagaattttatgcttgagacaaaatggcag  27690700           <------ZmHOX2a(1)       <---------TOE1(1)       <---------TOE2(1)      --------->SPL7    --------->TOE2(2)    --------->TOE1(2)    <---------SPL7   <---------ANAC55(2)   --------->ANAC55(2)   <---------ANAC58   <---------ANAC58  <-------TEIL  --------------->AtSPL3 --------->ARR14(1)                                         <------NtERF2 --------->CCA1(2)                                         <-----------HVH21 -------->ARR11(1)                                        --------->DEAR3(1)                    <---- -------->ARR14(2)                                      --------->ZAT2                      --------- ---------ARR14(2)                            ------>ZmHOX2a(2)                      <---------ARR11(3) -------->ARR10                        --------->ALFIN1 --------->At4g35610          --------->ARR11(3) ------------------WRI1               <------NtERF2     <---------At4g35610          <---------GLK1(2) -----At4g35610  --------->ALFIN1   <---------DEAR3(1)<-----------RAV1(2)          ----------->ARR10<   aagatacgtacgaggaagagtgcgactacttgtttaaggcggtgttgatcggagactcagccgtcggaaaatcaaacctcttgtctagattttctaaaga  27690800                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                         --------->MYB52(1)               <-----------HVH21                       ---                        --------->AtMYB61                --------->ANAC46                         ---                        ------->GAMYB                    <---------O2                             ---                        ===========================================MYC_MYB                       ----                       <---------MYB55(2)          <---------HSFB2a(1)                           ----                       --------->MYB46(3)          --------->KAN4(1)                             <---                       <---------ATHB12        --------->LBD16                                  -----                      =============================================MYC_MYB                     ------     --------->LBD16  ------>MYB46(1)        <---------LBD16<---------DEAR3(1)                <------   <---------LBD16    -------->P            -------->P   --------->O2                        <------- <---------ARR14(2)   ------>MYB83          =======================MYC_MYB           <---------ARR14(2) --------->ARR14(2) --------->AtMYB61       --------->MYB52(1)<------NtERF2          <---------GLK1(2) -------------------TaNAC69(2)           <---------ANAC58<---------TGA1a           ----------->ARR10< ->DOF2     --------->ZAT6         <---------ZAT6 <---------KAN4(2)--------->AHL20(2)--------->ARR14(2) ---------GLK1(1)  --------->MYB46(3)    <---------ANAC58--------->TGA1a--------->YAB1--------->CCA1(2)   cgagttccggtttgactctaaaccaaccatcggagtagagtttgcttaccggaatgttcacgtcggagataaaatcatcaaggctcagatttgggacacc  27690900         --------->DAG2       ---------->DOF2     --------->ANAC58     --------->ANAC58 <------NtERF2 ----->NtERF2 -------->ORA47(1) -------->LBD16 ------->DEAR3(1) --------ATERF1(2) ------->RAP2.6(2) ------->ATERF1(2) ------>DEAR4(2) ------>ORA47(2) ------>ATERF1(1) -->NtERF2  --------->CCA1(2) ----->ABI4(1)  --------->ANAC58                         --------->TOE2(3)                     ------ ------ATERF1(1)--------->ANAC46                         --------------->AGL15                 ------ ---->DEAR3(1)  --------->ANAC58                         <---------------AGL15               <------- --->DEAR3(2)  <---------LBD16             <---------ZAT14------>ZmHOX2a(1)            <---------ICU4 ---ATERF1(1)<-------TEIL     ----------->HVH21    --------------->AtSPL8          <---------AHL20(2) --ALFIN1<---------------AtSPL8     --------->O2<---------ZAT14                  <----------DOF2 <--- ---------ATERF1(1)   --------->ICU4<---------O2--------->ZAT14           <----------DOF2 <----------   gccggccaagaaaggtacacggacataattttgtgacctcgtgactactctactctgttccttattttgtatgtttctttgagctttaattttgaccaaa  27691000                                                                                          --------->ARR11(3)      <---------AHL20(2)              ----------->GT1                                     <---------GLK1(2)   <---------AHL20(1)                 <---------ANAC55(2)                             ---------->DOF2   --------->AHL20(1)           --------->AHL20(2)                      <----------DOF2   <---------ARR11(3)  --------->YAB1                <---------AHL20(1)                      --------------->AGL15 >MYB46(1)  <-----------GT1     --------->AHL20(1)         <---------ZAT14      <------MYB46(1) >MYB83  <---------YAB1         <---------AHL20(2)         --------->ZAT18      <------MYB83 --MYB59<---------AHL20(2)     --------->AHL20(2)          --------->ZAT14      ----------->GT1    -- ------ATHB12     --------->AHL20(2)  --------->ANAC55(2)  <---------ZAT18     <---------TOE2(3)   <- -GT1 <---------YAB1     <---------TOE2(3)       ---------->DOF2 <---------YAB1--------->MYB59    ---   tcaaaaatattattttacaaaaaaatgaaggaaataaattatgtaatataacaaagaagagtgaactatcaatacttttattaggttaaaaagatactta  27691100                          <---------AHL20(2)                       --------->ATHB51                       <---------AHL20(2)                       -------->HAHB4                       -------->ATHB1                       <---------ICU4              <---------AHL20(2)                       --------->YAB1             <---------ICU4                              -------                       <--------HAHB4            --------->ICU4                             <--------                      <---------YAB1     --------->YAB1             <---------ANAC58   --------->SPL7                      <---------ATHB51   <---------ICU4             <---------ANAC58<---------ANAC58                      --------->ICU4     -------->ATHB1         --------->ARR11(3)  <---------ANAC58          <-----------GT1<---------YAB1  --------->ATHB12       <---------ARR11(3) <-------TEIL     < ------->AHL20(2) ------>ZmHOX2a(1)     --------->ICU4        --------->ICU4--------->YAB1<---------At5g28300 --------AHL20(2)--------->TOE2(3)      <---------ATHB12    ---------->DOF2<---------ATHB12 <-------- ------>YAB1     --------->TOE1(3)      <---------YAB1 <---------YAB1    --------->WOX13(1) <--------   taaaaatacttgtaacattccttaattattatttgtaatctaatcattgtaatttttatgagtaaagatttcgagcaatcacaagttcgtactaccgtgg  27691200  Previous    Next  AGI:  At1g73640.1    Description:  AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding. similar to AtRABA6b (Arabidopsis Rab GTPase homolog A6b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G18200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68179.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 27690653    to: 27691788    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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