Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->At5g28300                               ----------->GT1                              --------->ANAC58                              --------->ANAC58                              --------->ANAC46                             <---------LBD16                         ------->TEIL              --------->At4g35610             ------->TEIL<---------ARR14(2)        <---------ANAC46 --------->ARR14(2)                  --------->YAB1 -------->ZAT6<---------At4g35610                            --------->ANAC55(2) --->YAB1 <---------REM1(1)<---------REM1(2)   --------->REM1(1)     <---------HSFB2a(2) --------->YAB1   taacacaatgacatgtagctctcaacgtatccacggtaaaaaaaaaactacatctaatgtcatacataatactcgaagaaatagtgaagaatcacagttg  27648700                                              <---------ARR14(2)                                              --------->ARR14(2)                                      -------->P                                      ------>MYB83                                      --------->ZAT2                                      --------->MYB52(1)                                      ----------->RAV1(2)                               <---------MYB52(2)                                      <---------ZAT2                                    <---------MYB59              <---------------AGL15   ------>MYB46(1)                                --------->ZAT18              --------------->AGL15  --------->MYB55(1)                       --------->ANAC58      -       --------->DAG2       <---------YAB1   --------->CCA1(2)                --------->ANAC58   ----      ---------->DOF2----------->GT1--------->MYB46(3)                        --------->ANAC46 ------   tataaccaaaaagttccaaaatacagtaacatcattcaccaactgggatatatgcaagatgaagaattggaaacagaaacaaggaagggaactaacttac  27648800                                                                                        ------>NtERF2                                                                                        --------->LBD16                                                                                       --------->ANAC58                                                                                       --------->ANAC46                        <---------HSFB2a(2)                                            --------->ANAC58                        <-----------RAV1(2)                           --------->At4g35610        <---                        --------->HSFB2a(2)                           <---------At4g35610        <---             <---------ANAC58                          <---------ARR14(2)       <---------AHL20(2) ---------->HVH21    ------>NtERF2      --------->ALFIN1   --------->LBD16 --------->ARR11(3)  ------ ----->ZAT6  <---------ANAC58        <---------DEAR3(1)--------->ARR14(2)  <---------ARR11(3) <------ -->P        <---------ANAC46 >>>>>>>>>TBF1            ------->TEIL   <---------ZAT2  <---------LBD16   cactgacatagagtttcgtcttcggcccagaagaagaagacggtggagaagaagatgaatccgtagagagacagctagatattaaaaccccgccaatgtc  27648900                                                                                                  ---                                                                                                  <--          --------->At4g35610                                                                   -----    <---------DEAR3(1)                                                                         <-----    --------->DEAR3(1)                                                                         <-----   --------->ATERF1(1)                                                      <---------ANAC55(2)------   <------NtERF2                                                            <------MYB46(1)    ------  <-----------HVH21                                                         <---------ANAC46  <------  <---------ATERF1(1)        <---------ETT(1)                              --------->MYB46(2) <------  ------>NtERF2           <---------ARR14(2)                       <---------HSFB2a(2)        ------- <---------DEAR3(1)       --------->ARR14(2)                       <------NtERF2              ------- <---------ANAC46       <---------DEAR3(2)                  <---------At4g35610             ------>ZmHOX2a(2) --------->DEAR3(1)     <---------ATERF1(1)                 --------->At4g35610            <------ZmHOX2a(2) ------At5g28300        <---------MYB46(3)                <-----------RAV1(2)              --------->GLK1(1) ------LBD16           <---------DEAR3(1)                <---------At4g35610<------MYB83  --------->ARR14(2) ----->HVH21          <---------LBD16              --------->CCA1(2)       --------->MYB111(1)<------ -----HVH21         --------->ANAC46--------->ATHB12  --------->At4g35610  --------->MYB59<---------ARR14(2)   acggcgtcgacgagcagaaattacgccggttccgacattgattcgtccacaagagacgctgcagatggccgagaagttaggtatgaagagccgatctcca  27649000           --------->ANAC58           --------->ANAC58        --------->ANAC46        ----------->HVH21 <---------------AtSPL8 ------>ARR14(2) -------ARR14(2)                                                              --------->ARR14(2) ---->LBD16--------->ANAC46                                                   --------->SPL7 ----------AGL15                                                           --------->HSFB2a(2) ----HSFB2a(2)                                                             <---------HSFB2a(2) --->HSFB2a(2) --------->SPL7                                        <---------ALFIN1 --------->AGL15                <---------At4g35610       <<<<<<<<<TBF1  --------->MYB52(1) ---LBD16--------->MYB52(1) --------->TOE2(3)     <---------ANAC58  <---------ALFIN1<---------ARR14(2) -----------AG --------->DEAR3(2)                 <---------ANAC58 --------->LBD16  --------->ARR14(2) ---------->AGL2            <---------MYB59    <-----------GT1    --------->HSFB2a(2) ---------->AGL3    ------>NtERF2    <---------WOX13(1)*TSS  <<<<<<<<<TBF1<---------LBD16           - -----------AGL1  <---------------------WRI1 <------------------------ANAC81--------->LBD16         <   gaaatggtacacgacggaacgacgactctacctaagctaattgccattgtttccgtcttcttcttcttccccaacttccggacccctatccccttaaact  27649100                --------------->AtSPL8                <---------------AtSPL3                <---------------AtSPL8              <------------CBF           ----------->ARR10      <---------TOE2(3)                                   --------->ANAC58      <---------ANAC46                                    --------->ANAC58  <------------CBF                                        --------->ANAC46 <---------AHL20(2)               <---------LBD16     <---------ATHB12                              - --------->ATHB12                 --------->LBD16   --------->WOX13(1)                           ---- -------->AHL20(2)           <----------DOF2       <---------WRKY38(1)                        ------- ---------AHL20(2)    <----------DOF2<-------GAMYB------------>CBF                         <---------MYB46(3)   tattaattgagggtagaattggtactttcttctttccacggttgaaaatttagtcaatgaacgaaacattcaaattgttttttttttgtttgtttgttat  27649200                                    --------->YAB1                                    <---------ICU4                                <---------ICU4                                -------->HAHB4                                <---------AHL20(2)                             <---------ICU4                             --------->YAB1                             <--------ATHB1                             <--------HAHB4------>NtERF2                             --------->ATHB51                            --------->AHL20(2)                               ------>MYB46(1)                            <---------ATHB51                                 ------>MYB83     <----------DOF2        --------->ICU4--------->DEAR3(1)                ----------->RAV1(1) -------->YAB1              <---------ATHB12                            --------->ZAT6    --------->YAB1 ----->YAB1   <---------ANAC58 --------->ICU4                    --------->AHL20(2)----------->GT1 -->YAB1      <---------ANAC58 <---------YAB1            <---------AHL20(2)--------->AtMYB61        -   aatcttactttgttttccttggtctcgtcaataattattcatcaccgcctaatctgcatttttttcaaaaaataacaccaacaaattgaaaatcataaga  27649300                                                                                   --------->WOX13(1)                                                                                  --------->YAB1                                                                                  -------->ATHB1                                                     --------------->AtSPL8       <---------ICU4-----                        <-----------GT1              <---------------AtSPL8      <---------ATHB12                     <---------ICU4            <---------AHL20(2)     <---------ANAC46        <------                    --------->ICU4            --------->AHL20(2) --------->ANAC55(2)        ---------  ---------->DOF2   <---------MYB52(1)    ------>ZmHOX2a(2)      <---------ANAC55(2)  --------->YAB1 -------->YAB1    ----------->GT1    <---------WOX13(1)     --------->ANAC46   --------->WOX13(1) <--   aatcaaaagtgaagaccaagtcgttattacatctatgagattgatccattttatatatgtacacattacatgttgtgaagacaatcattcagaacaatca  27649400      --------->WOX13(1)    <---------YAB1                                                                             ======  --------->YAB1                                                                --------->AHL20(2) <---------YAB1         --------->TOE2(3)               --------->ZAT14         --------->YAB1 ------ --------->ICU4        <---------ICU4                 --------->ANAC46          <---------AHL20(2) ------>GT1           <---------YAB1               --------->ZAT14--------->ARR14(2)       --------->At4g35610 ---ATHB12   <---------ZAT18                   --------->YAB1    <------ZmHOX2a(1)      --------->At4g35610 >WOX13(1)   --------->ZAT18     <---------ATHB12  <---------ZAT14<-----------ARR10     <---------At4g35610 -------MYB52(1)    --------->YAB1      ------->TEIL--------->ZAT6<---------ARR14(2)   ------->TEIL <   gttattatcaattagtctactaacatcattaacaaatgaatgaatcaaatcagaacactaaacttgaggacctgctcttcaattatatgcatctgcttcc  27649500                                                     --------->ARR14(2)                                           <---------ANAC58         <---------HSFC1(2)                                           <---------ANAC58         --------->HSFC1(2)                                      --------->ATHB12              --------->HSFB2a(1)                                     <---------YAB1 --------->GLK1(1)                         <------                                     ------>ZmHOX2a(1)           ---------->DOF2           --------->ANAC58          <----------DOF2           --------->TOE2(3)<---------ARR14(2)       <---------GLK1(2)     --------->ARR11(3)            ----------------->AG<---------LBD16       --------->HSFC1(2)     <---------ARR11(3)            ----------------->AGL1--------->LBD16     <---------HSFC1(2) ====================================================MADS_MADS<---------TOE2(3)            --------->ANAC46 ----------->AGL3            --------->REM1(1)      <---------GLK1(1)     ---------->DOF2  --------->ANAC58 ---------ATHB12   --------->LBD16<---------YAB1   <----------DOF2  <---------HSFB2a(1)   --------->LBD16   aaatgaagagctctttgttcccagagatgctacattatccttattgggtctggcatttccggttaatgaaagcttccaaagcttctctcatccacgaatt  27649600  Previous    Next  AGI:  At1g73530.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G54580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63240.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 27647294    to: 27649055    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73540.1    Description:  ATNUDT21 (Arabidopsis thaliana Nudix hydrolase homolog 21); hydrolase. Identical to Nudix hydrolase 21, chloroplast precursor (NUDT21) [Arabidopsis Thaliana] (GB:Q8VY81;GB:Q9FX46); similar to ATNUDT4 (Arabidopsis thaliana Nudix hydrolase homolog 4), hydrolase [Arabidopsis thaliana] (TAIR:AT1G18300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44734.1); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797) Range:  from: 27649319    to: 27650359    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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