Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              ---------->DOF2                            <------------CBF           *TSS                        <------------CBF                              <---------AHL20(2)   <---------YAB1                    <---------AHL20(1)                         <---------AHL20(2) <---------ICU4                      --------->AHL20(1)                        <---------YAB1 --------->YAB1                      --------->ARR11(3)                <---------TOE2(3)<---------WOX13(1) -------->HAHB4                    --------->AHL20(1)            <---------AHL20(2)  <---------YAB1 ---------ATHB12                   <---------AHL20(1)           --------->AHL20(2)  --------->AHL20(2) -------->ICU4                    --------->AHL20(2)        --------->ICU4  --------->ICU4 --------TOE2(3)                --------->AHL20(2)     --------->TOE2(3) <------ZmHOX2a(1)    ------- ------AHL20(2)               --------->AHL20(2)---------->DOF2 <---------AHL20(2)  <---------AHL20(2)   taatgatgactcttgttttctctaaaaaaaaaaaaaatatatattgaaaagaaagaaccctaatttttaaatttaggaatttttattttaattgaccagt  27617100                                           --------->ARR14(2)                                           <---------ARR14(2)                                        <---------ANAC58                                        <---------ANAC46                                        <---------ANAC58                                       <-------TEIL                    ------>MYB83      --------->ALFIN1                    ------>MYB46(1)  <-------MYC3               <-----------GT1       ------->MYC3                       ---------->DOF2            --------->ATHB12         <-------MYC2            <---------ANAC46            --------->YAB1           ------->MYC2          <---------WRKY18(1)            <---------ICU4           --------->TOE2(2)    ----------->HVH21           <---------ATHB12    --------->TOE1(3)          --------->WRKY12            <<<<<<<<<TBF1 ---->GT1  --------->ICU4      --------->TOE2(3)  <<<<<<<<<TBF1----------->GT1 <----------DOF2   gaatatgttcgaaatcattaccatccattgaaacctcaacgtgcgtgtcttcttcttcgtttgacctgtaattttaaagcgcattttcttcttcgcatag  27617200                                                               --------->ARR14(2)                                                               <---------ARR11(3)                                                      <---------ZAT2                                                      --------->ZAT2                                                      <---------At4g35610                                                --------->GLK1(1)                                                =====================HOX2a_HOX2a                                                <------ZmHOX2a(2)                                               <---------ARR14(3)                              ===============bZIP_DOF --------->At4g35610                              <---------O2     --------->ARR14(2)                              --------->bZIP60(2)------>ZmHOX2a(2)                              --------->TGA1a  <---------ARR14(2)             <-----------GT1                              --------->ANAC58 --------->ARR14(3)            ========================                              --------->ANAC46 <---------ARR11(3)         <----------DOF2                              --------->ANAC58 <-----------ARR10          ===========================                              --------->O2     <---------ARR11(1)    ================================                            <---------ALFIN1   --------->ARR11(3)    ---------->DOF2                      <---------ALFIN1        <---------ARR14(1)  <-----------TBP                     ------>ZmHOX2a(2)        <---------CCA1(2)<---------ARR14(2)     <------------CBF                    <------ZmHOX2a(2)        --------->LBD16   --------->ARR11(3)    --------->ATHB12                   <---------ARR14(2)      <---------LBD16    <------ZmHOX2a(1)     =================                   --------->ARR14(2)    <-----------GT1    <---------TOE2(3)---------->DOF2                <---------TOE1(2) <----------DOF2====================HOX2a_HOX2a    <----------DOF2   cagaagttttatttctccttggatccacttccacgtctttttttctccggatcttcagctctgaggatttttaaagcttttaagcgcttattggagttcg  27617300              <---------ANAC58              <---------ANAC58                                                                     <-       --------->O2                          <------MYB83                                          <-       <---------O2                          <------MYB46(1)                                  -------       --------->TGA1a                    <---------ANAC46                         <---------GLK1(2)<       <---------TGA1a                    <---------ANAC58                         --------->ARR14(2)  --------->At4g35610                     <---------ANAC58                         --------->ARR11(3) ================bZIP_DOF     <-----------ARR10                                    <---------ARR14(2) ================bZIP_DOF     --------->GLK1(2)                                    <---------ARR11(3) ================bZIP_DOF     --------->ARR11(3)                    <------------CBF   <---------YAB1 ================bZIP_DOF     <---------ARR11(3)               ---------->DOF2   ----------->ARR10 --   tatgagcaaacgtgagtcttgtctgcctgaaaaatcttctcttggcttggttctgaaatgtgactgaaagtattggttttaggcagattttgattcttca  27617400                                                                      <-------GAMYB                                                                     <---------MYB46(3)                                                                     <------MYB46(1)                                                                     <------MYB83        <---------MYB52(1)         <---------ARR11(3)                --------->MYB52(2)     ---------->ID1     <---------CCA1(2)                          <---------MYB52(1)          <----- --------AHL20(2)   <---------ANAC58              ----------->GT1 <-------GAMYB              <------- --------AHL20(1)   <---------ANAC46            ---------->DOF2  <-----------RAV1(1)         -------- ----->CBF          <---------ANAC58--------->At4g35610  <-----------GT1           <---------AtMYB61 ---------AHL20(2)  <---------ANAC55(1)    ----------->GT1  <----------DOF2      <------------CBF ------->AHL20(2)  <-----------------------TaNAC69(2)   <-----------GT1         <---------GLK1(2)   attttttttcgttaagagggtttcgtgtatcagacaacatctgaacagagaaaagtatttatcttttctgttggttactacagaattggtgggattttat  27617500                                                                                           <---------ANAC58                                                                                           --------->ANAC55(2)          <---------ATHB12                                                                 <---------ANAC46          ----------->TBP                                                                  <---------ANAC58          --------->AHL20(2)                                                           <----------DOF2      ------------>CBF                                       --------->YAB1          --------->HSFC1(2)    ----------->GT1                                         --------->KAN4(1)        <---------HSFC1(2)   --------->DAG2                 --------->ATHB12          --------->ICU4           <---------HSFB2a(1) ---------->DOF2               <-------GAMYB                <---------KAN4(1)     <------ZmHOX2a(1) -------CBF            ---------->DOF2                     <---------KAN4(2)    <---------TOE2(3) --AHL20(2)           --------->AtMYB61                  <------ZmHOX2a(1)   <----------CDC5       -- ->AHL20(2)<---------AHL20(2) <-----------RAV1(1)      <---------TOE1(2)----------->HVH21  <---------ANAC55(2)   tgcaaaaggtcaataaatggcagaccaaagctctgttgatgggattttagagtttcttaggaataatcgtttctctaacgctgaggaagctttgcgtaat  27617600                                                                       --------->CCA1(2)                                                               --------->ANAC46                                                               --------->AtLEC2                  <---              ----------->HVH21                                --------->ANAC58              --------           <-----------HVH21        <---------GLK1(2)       <-------TEIL<-------TEIL      --------->YAB1      <-----------GT1      <----------DOF2         <------ZmHOX2a(1)--------->ICU4        -----------      <---------ARR14(2)  <---------ANAC58 <-----------RAV1(1) --------->ANAC58        --------->MYB52(1) ------->At4g35610        <---------ANAC58 <---------YAB1  --------->CCA1(2)   ---------->DOF2   ----   gagcttagtaaccggtctgacattaatggctttcttcagaaacttatgctggaggaaaaagattcaagcaaagattcaaatgaaagagctaatggtaaag  27617700                                        --------->At4g35610                          <---------ZAT14         ---------->DOF2            <---------GLK1(2)           --------->ZAT2 <---------LBD16          --------->ZAT14   <-------GAMYB ------ARR11(3) <---------HSFB2a(2)     <---------ZAT2                                <-------GAMYB -->DOF2 <-----------RAV1(2)            <---------At4g35610                  --------->ZAT2 >GT1  <-----------HVH21  <---------ZAT18  <---------MYB46(3)                <---------ZAT2    ------ ----->ARR11(3) --------->HSFB2a(2) --------->ANAC46                         ----------->RAV1(2)-----   aacttcggaggtcaggttctcgagatagtgaagtctccaaggagctggttgtgaaagaagtagattgtgggactagcacaactgggtctgttatcaagtg  27617800                         --------->ANAC58                    --------->GLK1(2)             --------->ZAT2             <---------At4g35610             --------->At4g35610                                                                  <--             <---------ZAT2                                                                <---------ZAT2          --------->At4g35610                                                              <---------At4g35610          --------->ATERF1(1)                                                              --------->At4g35610          <---------At4g35610                                                             <----------         <---------RAP2.3(1)                                                              ===========         <---------ATERF1(1)                                                            <---------At4g35610        <---------RAP2.3(2)                                                         ----------->HVH21        <---------RAP2.6(2)                                                         --------->ALFIN1-        <---------DEAR3(1)                                                        <---------At4g35610      --------->ALFIN1   --------->ANAC58                                         --------->At4g35610   <-----------RAV1(1)  --------->LBD16                      <----------DOF2    ===================== --->ALFIN1 <---------MYB46(3)                        --------->At4g35610       <-----------RAV1(2)-- ------>GT1<---------DEAR3(1)                         <---------At4g35610    <---------GLK1(1)<------   ggaaaatggtgcggctgctgagaacccgagcaagaaggaaacgtttgtaccaagtgagatgagctttacattctccaagaattcaggtgatgctgctgct  27617900                              ------>NtERF2                              --------->LBD16                             <---------ETT(1)                             <---------ATERF1(2)                                             <-------TEIL  ------>ZmHOX2a(1)          <---------HSFB2a(2)                     --------->YAB1     <---------WOX13(1) -------ALFIN1               --------->ATERF1(2)                    <---------YAB1      <--------P -RAV1(1)                    --------->HSFB2a(2)                  --------->YAB1       <-------GAMYB ===========RAV             <---------LBD16      <---------DAG2  <---------YAB1       <------MYB83 ---------->RAV1(2)    <-----------GT1           <----------DOF2<---------TOE2(3)     <------MYB46(1) =RAV     --------->KAN4(2) <-----------------AGL1   <---------HSFB2a(2)             --------->MYB59 ---->ZmHOX2a(1)    ------->TEIL         <----------DOF2       --------->YAB1        <---------AtMYB61 ---At4g35610  ------>ZmHOX2a(1)    --------->YAB1   --------->HSFB2a(2)--------->YAB1<---------MYB46(3)   cctcctgatgctcattcctatgaatttacttccggcaatggtactttggagccttatggaaacattgatgataatagtagtagtagtttggttgattcat  27618000  Previous    Next  AGI:  At1g73445.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.1e-06 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 27616277    to: 27617011    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73450.1    Description:  protein kinase, putative. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G17750.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT77851.1); similar to hypothetical protein OsI_012907 [Oryza sativa (indica cultivar-group)] (GB:EAY91674.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41966.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like ( Range:  from: 27617517    to: 27622558    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version