Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ----------->HVH21                       ----------->TGA1                     <---------At4g35610                       --------->GLK1(1)                     --------->At4g35610                       --------->CCA1(2)                  <------NtERF2                               <---------ARR14(2)               ---------->ID1                         --------->ARR14(2)              <-----------HVH21                --------->ZAT2 --------->ARR11(3)  --------->ANAC46             --------->O2                      <---------At4g35610           <-----------HVH21        <------ZmHOX2a(1)   --------->At5g28300--------->At4g35610 --------->ANAC46                --    ---------->DOF2<---------DAG2              <---------ZAT2 <---------ARR11(3) <---------At4g35610 ------>ARR11(3) ------>NtERF2             <---------ARR11(3) --------->ARR14(2) --------->At4g35610 -------ARR11(3)--------->DEAR3(1)   --------->YAB1   <---------ARR14(2) <---------ARR11(3)--------->YAB1   gatgttcaaaggacctcgtcgccttctgacggtaatcaaacacaatatcagctgcaaattcacagatatacacaagttctgtcaactccacaatcagagt  27500100                                                                           <---------HSFC1(2)                                     ---------->DOF2                       --------->HSFC1(2)                                   <---------------AGL15              --------->ANAC58                                   --------------->AGL15              --------->ANAC58             <-                  =================================MADS_MADS          --------->ANAC46            <--                  <---------------AGL15                        <----------DOF2                    <--                  --------------->AGL15                     --------->GLK1(2)      <---------ATHB12-- ------------->AtSPL8      <------ZmHOX2a(1)  ---------->DOF2 <---------ICU4      XXXXXXXXXXXXXXXXXXX   cattgtacttatccaaattccaaaatataggatttttcaaaaagaagaaaaagagacttaacaatcttttccaaggaagtctccaatgaatacatcatcg  27500200                                                   --------->ANAC58                                                   --------->ANAC58                                                <----------CDC5                                                <------NtERF2                                              --------->ANAC58            --------->ZAT18                   --------->ANAC58         <---------ANAC58                     --------->ANAC46         <---------ANAC58     <---------YAB1 --------->LBD16     ------>NtERF2 --------->MYB46(3)        <---------LBD16     <---------At4g35610  --------->YAB1    <---------ANAC58 --------ICU4    <---------ALFIN1           <---------ANAC58                                   ------ -------ATHB12   --------->MYB52(1)      --------->ARR14(2)          ------>ZmHOX2a(1)<-----------GT1 ----ZmHOX2a(2) <---------ALFIN1--------->TOE2(3)--------->DEAR3(1)<---------ICU4  <----------DOF2 -- ------->YAB1   ----------->HVH21        <---------ARR14(2)   --------->ARR11(3)------->TEIL   ------ X>MIR397B  <---------ZAT18   <---------TOE2(3)------>NtERF2<---------ZAT6     <---------CCA1(2)  <--   atcatgccgcttcgtgccccaacggctatgttaacattatccgattccgcgccaagcctatagagataatccttcccttctgaatctttaacttcccatg  27500300                                                                 <---------YAB1                                                              <------NtERF2                                                              <---------MYB52(1)                                                             <-----------HVH21                                                             <---------RAP2.6(3)                                                             ------>NtERF2                                                            --------->RAP2.3(2)                                   --------->MYB46(3)       --------->RAP2.6(2)                                 <---------ALFIN1           --------->RRTF1(3)                                 --------->RRTF1(3)         --------->DEAR3(1)                                 --------->DEAR3(1)         --------->RAP2.3(3)                                 --------->RAP2.3(3)        --------->RRTF1(2)                               <---------RAP2.3(1)          --------->DREB2C(2)                               ------>NtERF2               --------->RAP2.3(1)                              --------->ANAC46             --------->ERF1                          <----------DOF2                  <------NtERF2                         --------->ARR14(2)                --------->ATERF1(1)                         <---------ARR14(2)                --------->RRTF1(1)        ------>NtERF2 <---------DEAR3(1)                  ------>NtERF2       <---------ETT(1)------>NtERF2                      <---------ATERF1(1)       ----------->HVH21<------NtERF2    <---------YAB1  --------->DEAR3(1)          --------->MYB52(1) ----->HVH21         --------->LBD16   --------->YAB1    --------->ATERF1(2)   <---------ANAC46 ------->ATHB12      <---------At4g35610<-----------TGA1 <---------ATERF1(2)   <---------ANAC58 ----->TGA1          <---------LBD16--------->AtMYB61   <---------RAP2.6(2)    <---------ANAC58 -------YAB1       <---------LBD16------>NtERF2     <----------DOF2    <------ZmHOX2a(1)--------->ATHB12   acgattgctccgacaacttcttccgcggctttgcgccaccatcgtcattagccactttgccgccgtcattagaggagggtttcgagcaaacgattgaaga  27500400                                                                                                -----                                                                                                -----                                                                                               ------                                                                                      <---------YAB1                                                                                    --------->CCA1(2)                 <---------TOE2(3)             >>>>>>>>>TBF1                       --------->ARR11(3)                ---------->DOF2             >>>>>>>>>TBF1       ----------->GT1    <---------ARR11(3)            --------->ATHB12             >>>>>>>>>TBF1         --------->ALFIN1  ----------->ARR10           --------->ICU4             >>>>>>>>>TBF1         --------->DAG2  --------->ANAC58  -------     --------->HSFB2a(2)          <------ZmHOX2a(1)       ---------->DOF2   --------->ANAC58  -------   gagttttctggtattgattaaagtagcattgaacgaggaagaagaagaagaagaagattgtaaaggtggaaacttgaaacgcagagatatgtttgcaagc  27500500               <-----------GT1        ------>MYB46(1)                                          <---------ARR11(3)        ------>MYB83                                         ---------->DOF2       --------->ANAC46                                  --------->AHL20(2)      --------->MYB46(3)                             --------->AHL20(2)      ------->GAMYB<---------ZAT14                  <---------AHL20(1)   <-----------GT1 --------->ZAT14     <---------DAG2<---------AHL20(2) -->GAMYB   ------>MYB46(1)            <----------DOF2   --------->YAB1           ---------->DOF2 ---->ANAC46------>MYB83  --------->AHL20(2)        --------->AHL20(1)      ---------->ARF1         > --->MYB46(3) <---------ATHB12         *TSS         --------->AHL20(2)   <----------DOF2   --------->ARR11(3) -->ANAC58--------->AtMYB61---------->DOF2     ------------>CBF  --------->ARR11(3)       <------ZmHOX2a(1) -->ANAC58<---------MYB111(1)         <---------DAG2<---------AHL20(2)<-----------GT1  --------->CCA1(2)   gccattaacccaccaaatcacttcacaattaaagcttctacctttttccctcaatttaataaaaaaagatttatacttttctcccaaagataggattttg  27500600                                                                         <---------ALFIN1                                                                        <------NtERF2             ---                                                                      <---------TCP15(1)          <--                                                                      --------->PCF2              ---                                               <---------HSFB2a(2)    <---------TCP20    <---------ANAC58                                            <---------ARR14(2)        --------->PCF5     <---------AtLEC2                                       <-----------RAV1(1)  --------->ARR11(3)           <---------ANAC58 >>>>>>>>TBF1          ----------->HVH21  <---------MYB46(3)<---------ARR11(3)  <-----------GT1  <---   aagaagaagagccatttgttctcgtctgatagtggctaattctgtggttcttgaagtcaaaagatagttttggccccacttgttactacttgcatgtttg  27500700                                                            --------->ARR14(2)                                                       <---------ANAC46                                                       <------MYB46(1)---------->DOF2                                                       <------MYB83 <------ZmHOX2a(2)                                                      --------->MYB111(2)                                                      --------->MYB46(2)                        <----                                                      --------->MYB111(1)                    -------- ---->TEIL                                            --------->MYB55(2)             <---------ICU4 -------ARR14(2)                       --------->CCA1(2)    <---------ARR14(2)       --------->ATHB12 ------>ARR14(2)                    ----------->GT1   <---------AtMYB61         <---------MYB52(1) ------CCA1(2)                  --------->ICU4        <---------MYB46(3)   <----------DOF2  <--------   tatctgtctgaaactatagcaattccaatttgtaagaatggatataagttttttgtttggtggattttggatcaaagctttagttagtcattagaaggta  27500800                                                                         -------->HAHB4                                              <---------MYB59            <---------ICU4                                             --------->ANAC55(2)         <---------AHL20(2)                                             <---------ANAC55(2)        <---------ATHB51                                             --------->ANAC55(1)        <---------YAB1                                             --------->ANAC46           --------->ICU4                                             --------->ANAC58         --------->YAB1                                            <-------TEIL             --------->AHL20(2)                                         <------MYB46(1)             <---------AHL20(2)                                         <------MYB83              --------->TOE2(3)             <------NtERF2              <---------------AtSPL3    <--------HAHB4             --------->At4g35610        --------->MYB59          --------->ICU4        ----------->GT1             <---------ZAT2             --------->MYB111(1)      <---------YAB1        <---------MYB46(3)             <---------At4g35610        <---------------AtSPL8 <---------ICU4      --------->ATHB12            ----------->RAV1(1) ----------------------->TaNAC69(2)--------->ATHB12<---------YAB1  <---------YAB1 <---------MYB52(1)<--------P--------->ANAC58  --------->YAB1--------->YAB1 ---TEIL<---------TOE2(3)   <-------TEIL--------->MYB46(2)    <---------ATHB12 --------->ICU4 --->GT1--------->DAG2     --------->AtLEC2 --------------->AtSPL8<---------ICU4<---------ICU4 -------AtSPL8 ----------->GT1  <---------AtMYB61             --------->ICU4 <---------ICU4   cattatgaataaggcagcagttaatctacatgcattggtagtttggtacgtaactcattttgtaatcatcattaattattcattatcattggttatatga  27500900            --------->AHL20(2)          --------->ANAC46     <-----------GT1 --------->AHL20(1) --------->ARR11(3) --------->AHL20(2)            <---------TOE2(3) <---------AHL20(1)            <---------TOE1(3) <---------AHL20(2)         <---------AHL20(2)            --------->AHL20(2) <---------ARR11(3)     <---------AHL20(2)                --------->YAB1               <------ZmHOX2a(2)   caatatatttccacttaattacacatatattttatggtttcccattagaacaatagacaataatatagagacttcgagtcttcgacgagatcgagatgag  27501000  Previous    Next  AGI:  At1g73110.1    Description:  ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative. similar to RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana] (TAIR:AT2G39730.2); similar to RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana] (TAIR:AT2G39730.1); similar to RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana] (TAIR:AT2G39730.3); similar to Os04g0658300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054128.1); similar to Rubisco activase 2 [Mesembryanthemum crystallinum] (GB:AAZ41846.1); similar to OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67790.1); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 27497782    to: 27500539    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73120.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN69175.1) Range:  from: 27500847    to: 27501611    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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