Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <----------DOF2            ------>MYB83                                                               --------->MYB46(3)            ------>MYB46(1)                                              --------->ARR14(2)          ------->GAMYB                                                --------->LBD16 <---------MYB55(2)          --------->AtMYB61          --------->AtMYB61                --------->HSFB2a(2)         --------->MYB46(3)     <-----------HVH21                     --------->HSFC1(1)       ------->GAMYB   --------->TOE2(3)   --------->TOE1(3)          <---------HSFC1(1)      <---------MYB55(2)   <---------At4g35610                        <---------HSFB2a(2)  --------->AtMYB61      --------->MYB46(3)------>ZmHOX2a(1)  --------->TOE2(3)  <<<<<<<<<TBF1          --------->ARR14(2)      <---------MYB111(2)  --------->At4g35610 <---------REM1(2) <<<<<<<<<TBF1      <------ZmHOX2a(1) >NtERF2-------->P     --------->TOE1(3)--------->ARR14(2)------>ZmHOX2a(1)       <---------TOE1(2)   ctctatcaacaaccatccctttcttccttagctcagtcaccaaaacctcaacacagtctccttcttcttcttccagaaccctcttaggaaccaccattgc  27476800                                                                 <---------GLK1(2)              <----                                                              --------->YAB1                    <----                                                            --------->ANAC58                    -----                                                            --------->ANAC58            --------->ZAT2                                                        --------->ANAC46                --------->At4g35610                   ------>ZmHOX2a(1)                    --------->ANAC58   <---------GLK1(1)    -----                  <---------ALFIN1                      --------->ANAC58   --------->GLK1(1) --------        --------->MYB46(3)         <---------ATHB12 <-----------HVH21   <---------TOE2(3)<---------ANAC46   aacctcgtgaacaactcgctcctccccattactcccattcatttccaaaaaccctatcacacaagcagaattttgagatttcttctcagtagctggaaag  27476900             --------->CCA1(2)             <------ZmHOX2a(2)             --------->At4g35610            <-----------ARR10            --------->AGP1            --------->ARR14(2)            --------->ARR11(3)            <---------ARR11(3)            <---------ARR14(2)                                    <---------DAG2     <----------DOF2  <---------DAG2                                                  <----------DOF2    <---------DAG2  <----------DOF2                                        <----------DOF2      --------->ZAT14 -----HSFB2a(1)                                   --------->GLK1(2)        --------->At4g35610 -----HSFC1(2)                                    <---------ARR14(2)       ------>ZmHOX2a(1) ---->HSFB2a(1)----------->HVH21                  --------->ARR14(2)   <-----------GT1 ---->HSFC1(2)------>ZmHOX2a(2)              ---------->DOF2   <-----------GT1<---------ZAT14------>ZmHOX2a(1) -->DOF2    <---------AGP1               <-----------GT1--------->TOE2(3)  <---------At4g35610      -   cttcctttttctaagatctgactcaaaatgcccaaatgtgtattcaccaaagaatccacctttattcactttttttcctctgaactacttttctcctctg  27477000                          ----------->RAV1(1)                 --------->ARR14(2)    <-----------RAV1(2)                                          <                 <---------ARR14(2)   <------ZmHOX2a(2)                                          ----                <---------MYB52(1)   <---------ARR14(2)                                         -----             <---------LBD16    --------->DAG2          <---------ZAT14                      --------           <-----------GT1=========================RAV<---------At4g35610                    -------- --------->AHL20(2)    <---------PCF5--------->ARR14(2) --------->ZAT14                      -------- <---------AHL20(2)  --------->HSFB2a(2)              --------->At4g35610                   --------- -------->ICU4 --------->LBD16---------->DOF2<----------DOF2                          --------->HSFB2a(1)   taattaatctaattttccggtttctgggccacaaaaggggatcagggttttaagtcagaacactgcaaaaatcaagaattcgattccaacattccacgaa  27477100                 <---------ARR14(2)     ------>MYB83--------->ARR14(2)     ------>MYB46(1)     --------->ANAC58   <---------MYB59<---------CCA1(2)                                        <----------ID1 ------ZmHOX2a(1)<---------ARR11(1)                            --------->LBD16 ----->DAG2      ------->TEIL                                 --------->HSFB2a(2) ----->DOF2     <---------CCA1(2)                             <---------HSFB2a(2) ->ANAC46     --------->ANAC55(2) ------->TEIL               <---------LBD16--------->CCA1(2) ->ANAC58     <---------ANAC55(2)<---------CCA1(2)         --------->ARR14(2)        ---------->DOF2 ->ANAC58<-----------GT1 --------->ANAC58                  <---------ARR14(2)   --------->ANAC58 >LBD16 --------->AHL20(2)  ------->TEIL  <---------MYB52(1) <---------ANAC46   --------->ANAC58   aaggacctaatttactacgtatctctcacgaatttgaatcttccattacttcaaaaaaacgtttctgggaaatggaagagacaagacaaaagcatttggg  27477200                                                                                               <-----                                        --------->ANAC58                                      <------                                        --------->AtLEC2                                     --------                                        --------->ANAC46                                    ---------                              --------->ANAC58                                              <--------                              ----------->GT1                 <---------AHL20(2)       <---------At4g35610                              --------->ANAC58              --------->TOE2(3)          --------->At4g35610                <------------CBF        --------->ANAC58    <----------DOF2        --------->ANAC58               *TSS         ---------->DOF2   ------------>CBF--------->AHL20(2)   --------->ANAC58 -   gtttgaatttgaaacttagattgaattttggaaagaaattacatgcaaaacaatccaaaatactttaattttgctatgagttggcacgcagatgatgatt  27477300                                                               <---------ANAC58                                                               <---------ANAC58                                                               <---------ANAC46                                                           <---------ANAC58                                                           <---------ANAC46                                                       ------->MYC2                                   ===========================MYC_MYB                                  <---------At4g35610  <-------MYC2                                  --------->ZAT2       ------->MYC3                                  <---------ZAT2       <-------MYC3                                  --------->At4g35610 <---------ANAC58                                 --------->ALFIN1     <---------ANAC58                              <---------DEAR3(1)    <---------TGA1a                             --------->SPL7         --------->ANAC58                             <---------ORA47(1)     --------->TGA1a    <---------ANAC46       ----------->HVH21        <---------O2 ----WOX13(1)             --------->TOE2(1)         --------->ANAC58                           <----- ------CBF                --------->TOE1(1)    ----------->HVH21                          <---------ARR11(3) ->ATHB12   ---------->DOF2<---------SPL7   ==================bZIP_DOF             --------->YAB1---- >ICU4      ==================================================bZIP_DOF          --------->YAB1 ------ -YAB1----------->GT1   --------->MYB52(1)  <----------DOF2<---------ANAC58    <---------YAB1-------- ----->ZmHOX2a(2) ----------->HVH21<----------CDC5  --------->O2     ----------->HVH21  <---------YAB1   gatccatcgtgtaaaaaagagtgacacatcggacggtgctgagtcacttttgacacgcgtgccttgtgtgtgtgactgtttattatcaccatgatatata  27477400                                     <---------WRKY12                                     <---------WRKY38(1)                                    ------------>CBF                              <-----------GT1                                                     <--      --------->LBD16     <------------CBF                                                        <-- ----AHL20(2)           <---------YAB1                                <---------ALFIN1           <--- ----->WOX13(1)  <---------DDF1   ----------->GT1                 ------>ZmHOX2a(1)    *TSS <------NtERF2 --->AHL20(2)    ----------->RAV1(1)--------->WRKY18(1) <---------At4g35610        --------->TOE2(3) --->TBP        --------->DREB2C(2)<-----------HVH21    --------->At4g35610       --------->YAB1 ----   aatcaaaccgggtaatgaccgacatttcgattgaaccggtcaattccgattttgacttagcttccttcctcccctcttcttcaaacatcaacgcgtcgag  27477500                                                                                          ------>ZmHOX2a(2)                                                                             <---------HSFB2a(2)                                                                             --------->HSFB2a(2)                                                                            ------>ZmHOX2a(2)      --------->LBD16                                            --------->ANAC46         -----------  <-----------GT1                                            --------->CCA1(2)    <------ZmHOX2a(1) -------RVE1(1)          ---------->DOF2                     ============================HOX2a_HOX2a -------CCA1(1)       --------->TOE1(3)                     --------->AGP1  =============HOX2a_HOX2a ------ARR11(3)       --------->TOE2(3)                 <---------MYB52(1)--------->ARR11(3)--------- ----->ARR11(3)    --------->GLK1(1)        --------->GLK1(2)<------ZmHOX2a(2)    ===============HOX2a_HOX2a   atattttccccaaatacagagaaaccctaaagtctctgtttttgagaatttttctaccgatagatccaagcgaattgatctagaggaattgatccaacat  27477600                          --------->GLK1(1)                                  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <---------GLK1(1)                           --------->ANAC58                         --------->ARR14(2)                           <---------TOE2(3)                         <---------GLK1(2)                            --------->ANAC58                         <---------ARR14(2)                        <---------ATHB12                         <---------ARR11(3)     ---------->DOF2   --------->ANAC58                         --------->ARR11(3)  --------->TOE2(3)--------->ANAC58                    ------->TEIL            --------->ANAC55(2)   --------->ANAC58               --------->At4g35610          <---------ANAC55(2)  --------->WOX13(1) ------>AGL1--------->At4g35610             --------->ANAC46  --------->ANAC58             ---------- -->RAV1(1) <---------At4g35610           <-----------GT1  ---------->DOF2  --------->ALFIN1   gggtaacacagataagctgatgaatcagatattcgatttgaaatttacgtcaaagtctctgcaaaggcaatcaaggaagtgtgagaaggaagagaaagca  27477700  Previous    Next  AGI:  At1g73020.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO45737.1); similar to hypothetical protein OsI_003390 [Oryza sativa (indica cultivar-group)] (GB:EAY75543.1); similar to Os01g0706700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044018.1); contains InterPro domain Protein of unknown function DUF590 (InterPro:IPR007632) Range:  from: 27473195    to: 27477215    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g73030.1    Description:  VPS46.2. similar to VPS46.1 [Arabidopsis thaliana] (TAIR:AT1G17730.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 27477487    to: 27478783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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