Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                    --------->ANAC58                             ----                                                    --------->ANAC58                             ----                                             --------->At4g35610                                 <---                                             <---------At4g35610                               <-----   --------->RAP2.6(2)           <-----------------AGL1                    --------->MYB46(3)  <----- -->ARR14(2)       <---------ANAC58     --------->ANAC58            <---------WOX13(1)         ------ ---ARR14(2)       <---------ANAC58     --------->ANAC58         ----------->HVH21    <------ZmHOX2a(1)   cgaagccgaactcgtccaattgtttgtcttagggttcttgaaacggcagaagacaaacaagtggtctctgatggataaccactctggaggatgaattaag  27419500                                        <---------ZAT14                                   --------->ZAT14                                               ----         ==================HOX2a_HOX2a  <---------ZAT18                                         <----       <---------TOE2(3)           <---------ZAT14                                              ----- XXXXXXXXXXXXXXXXXXXX>MIR159C  ------>MYB83                                                   ------- ------>CCA1(2)                ------>MYB46(1)                                                <------ ----->ARR11(3)              <---------MYB59                                                 -------- ----->ARR11(1)              --------->MYB46(3)                                              <------- ------ARR14(2)             --------->ANAC58                                            --------->ANAC58 ----TOE2(3)                --------->ANAC58                                            --------->ANAC58 ----YAB1<------ZmHOX2a(1)<-----------GT1                        --------->At4g35610--------->ANAC58 ----->ARR10        <------ZmHOX2a(2)   --------->ZAT14          <---------At4g35610--------->ANAC58<   atttggattgaggagagacccgatcaagttacccaactccagtgaacatgaagaagacgagaattgcagatgagaagacgactctctcgcaagtaatcat  27419600                                                                       <---------AHL20(2)                                                                       --------->AHL20(2) --------->YAB1                               <---------MYB46(3)      <---------WOX13(1) ----->ATHB12                                <--------P          --------->At4g35610   -------------- -----YAB1                                  <---------MYB52(1)   <---------At4g35610   -------------- ---->ICU4                                  <-------GAMYB     <---------At5g28300      <------------- -->YAB1                             <------ZmHOX2a(2)        -------->P           <---------YAB1 ---ICU4                            <---------ARR14(2)     <---------ANAC58        --------->ICU4---- ->ICU4                             --------->ARR14(2)     <---------ANAC58   ----------->GT1    ---- --ATHB12                      --------->GLK1(2)         <-----------GT1<---------AHL20(2) --------->SPL7 -------TEIL     <---------AHL20(2)--------->At4g35610   <---------AHL20(2)  <---------TOE2(3)-------   gattcataaaaacctgtatttttttttatgcagaatcagatcagccggttgttttgaatttacttaccgctgatttattttggttataattcgtacacca  27419700      --------->LBD16                                  <---------------AtSPL8    <---------LBD16                                    --------------->AtSPL8 ->AtSPL8                                              <---------------AtSPL3                  ------ ->AtSPL3                                         ---------->DOF2                      <-----------GT1 --AtSPL8                     ------>ZmHOX2a(1)--------->TOE2(3)                   --------->ATHB51 -->MYB83--------->GLK1(1)   <---------MYB59 --------->ARR11(3)                    --------->AHL20(2) -->MYB46(1)          --------->ARR14(2)     <---------ARR11(3)                    <---------AHL20(2) -->ANAC46            <---------ARR14(2)    <---------GLK1(2)            --------->LBD16      <------   aattgaaccggaattcaaaacccaaatcggtcctaatataaaaccaaaatctcaaagagagtaccaaaacaaaaccgggctagaattattttcagtatga  27419800                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                              <------                          ------->TEIL                                                       *TSS  <-                      <---------KAN4(2)                                                     <--------                 <---------LBD16                                                --------->WOX13(1) <-                <---------LBD16                                                ======================            ----------->HVH21                                                  ---------->DOF2-------            --------->WRKY38(1) <---------TOE2(2)                             <---------ATHB12------- --->ATHB12 --------->WRKY12<---------LBD16                      --------->ANAC58        --------->YAB1 ---YAB1  --------->At4g35610   <---------TOE1(2)                --------->ANAC58  --------->YAB1----   tttgggttaatgagttgactcgggaatgaactcggaggtttcatatgaaataaacaaaatagatgaaacgaaaacagcaaatcaagcagaatcatcaggt  27419900                     <------NtERF2                   <---------ANAC46                  <---------At4g35610                  <---------LBD16            --------->GLK1(1)         ----------->ARR10                          ------>NtERF2    <-----------RAV1(2)                            <---------ANAC58    --------->ATERF1(1)                            <---------ANAC58 ------->O2<---------GLK1(2)                     <---------At5g28300 --------O2<---------ARR14(2)                   <-----------GT1 --------ANAC46   --------->ATERF1(1)        --------->GLK1(2) --------TGA1a    ------>NtERF2              --------->ARR14(2) --------ANAC58  <---------RAP2.3(1)         <---------ARR14(2) ------>HVH21   <---------RAP2.6(2)         <---------GLK1(2) ------>TGA1<---------GLK1(1)             --------->LBD16 ------HVH21--------->CCA1(2)            --------->HSFB2a(2) ---At4g35610   <---------RRTF1(3)       <---------HSFB2a(2) ---ANAC55(2)   <---------DEAR3(1)     --------->CCA1(2) --------ANAC58 <---------RAP2.3(2)    <------ZmHOX2a(2) ---RAV1(2)--------->ARR14(2)         --------->ARR14(2)                       ---------->DOF2 --------bZIP60(2)<------NtERF2       <---------ARR11(3)             <------NtERF2 ========bZIP_DOF<---------RRTF1(1)   <---------ARR14(2)           <---------ANAC46     ----------->GT1 -->At4g35610   <---------RAP2.3(3)   --------->ARR11(3)           <---------ANAC58   --------->At4g35610 -->ANAC55(2)   <---------RRTF1(2)    --------->AGP1<---------RAP2.6(3)      <------ZmHOX2a(2) ----->MYB52(1)<---------LBD16      ----------->ARR10              <---------ANAC58---------->DOF2   gacggggcaggcagatttgcggcggattactgggtgagaagatccagaatttgccgtctcatggcaatggcgtagagggatcaaagaaagcagaaaattt  27420000                                                                                     <---------------AGL15                                                                                     --------------->AGL15                                                                                    -----------------                                                                              --------->DAG2                  --------->YAB1                                             ---------->DOF2               --------->AtMYB61                                         --------->LBD16              --------->MYB46(3)                                        --------->HSFC1(1)             ------>MYB46(1)                                            <---------HSFC1(1)             ------>MYB83                           --------->HSFB2a(2) <---------HSFB2a(2)            <---------ALFIN1                        <---------HSFB2a(2) --------->HSFB2a(2)            --------->ANAC46                 <---------WRKY45          <---------LBD16           --------->MYB46(3)                <---------WRKY38(1)     --------->GLK1(2)           <---------MYB55(2)            --------->ALFIN1            --------->ARR14(2)<---------ZAT2         --------->PCF2  --------->TOE2(3)   <---------WRKY12        <---------ARR14(2)--------->ZAT2        <-----------GT1  --------->TOE1(3)<---------MYB46(3)      <---------TOE2(3) <----------------   caaaccattttgacccaccatcatcaagcttaaaacgaaggcagtggtcaacttctaaaacatgaaatgaggttctggaaaaagtttccagctagggtaa  27420100                                                                                        <------NtERF2                                                                                       ------>NtERF2                                                                                      <---------PCF2                                                                                     <------NtERF2---                                                                                     --------->ATERF1(1)                                              --------->YAB1                        <---------ATERF1(1)                                      --------->AtLEC2       <---------ANAC58      <---------ANAC46                                      <---------ANAC55(2)    <---------ANAC58      --------->ALFIN1                                      ----------->GT1      --------->GLK1(2)       <---------ANAC58              --------->TOE1(3)    <---------MYB52(1)     <---------GLK1(2)        <---------ANAC58 >AGL1        --------->TOE2(3)   <-----------HVH21 --------->ATHB12               <---------DEAR3(1) -AGL1        <---------DAG2     --------->ANAC46  <-------TEIL                <-----------RAV1(2)<--   cccaattgagaggtaaccttacctcttgactatgtccgtcatgtaaaatcatattcattagattcttgtgttcttcttgattcaggcgggggcaatggat  27420200                                                <---------ANAC58                                    --------->LBD16                                    --------->ANAC46                           <---------ICU4       <---------ANAC55(1)                           --------->YAB1       <---------ANAC46              <---------LBD16      --------->LBD16                                             ------         --------->ATHB12 --------->ICU4        <---------ANAC58                  <-----------ARR10    ------>ZmHOX2a(2)     <---------ATHB12     <------NtERF2                      --------->ARR11(3) ------>ANAC55(2)   --------->DAG2<-----------RAV1(2) <---------AtLEC2            <---------ARR11(3) -------ANAC55(2)  ---------->DOF2<---------LBD16 --------->ALFIN1               <---------At4g35610   acttgatcgagtgatttggggaaaaggaatcattctccagggaattggagccgtgtgcatagagatgctcaaggctcagtggaagctcttccccttctat  27420300                                  --------->GLK1(1)     <---------ANAC58        <---------AtLEC2          <---------ARR14(2)   <---------LBD16        <---------ANAC58   ---------->DOF2          <----------DOF2                            <-----        <---------ANAC58  <---------ATHB12--------->ICU4<---------ANAC46                  <---------ARR14(2)       <---------ZAT2 <---------------AGL15--------->ATHB12                               --------->ARR14(2) --->ZAT14           ----------------->AG <---------YAB1<---------ANAC58    ------>ZmHOX2a(1)  ------   actcttgtctgcttggccaacttcccaaatcaagcgaattccacatgattgtagctttgcggatggagacttcaactcctctgagaattgcaaatcggat  27420400  Previous    Next  AGI:  At1g72860.1    Description:  disease resistance protein (TIR-NBS-LRR class), putative. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G17600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16282.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3 (InterPro:IPR011713) Range:  from: 27419889    to: 27424439    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72855.1    Description:  other RNA Range:  from: 27419893    to: 27421984    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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