Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------AHL20(2)                                                                                      *TSS                          <-----------GT1                                    <---------AHL20(2)                          <---------AHL20(2)   <---------AHL20(2)            --------->AHL20(2) ---->GLK1(1)         --------->AHL20(2)   <----------DOF2            <---------HSFB2a(2) ----HSFC1(2)<----------DOF2            <---------YAB1         <-----------GT1<---------AHL20(2)    < --->HSFC1(2)<---------DAG2      --------->LBD16      ---------->ID1  --------->HSFB2a(2)         ---   ttccagtttgcaaaactttttcgattatttacttccgaatttatgctttttattttgtcttctatttacgctctcgaaattaaatcgaattttttttttt  27386600                                                     --------->AHL20(2)                                                     <---------AHL20(1)                                                     <---------AHL20(2)                                                  --------->AHL20(1)                                                 --------->AHL20(2)                                                 <---------AHL20(2)                                                 --------->ATHB51                                                 <---------ICU4          --------->AHL20(2)                    --------->ICU4 <----------DOF2             <----------DOF2------>ZmHOX2a(1) ---------DAG2<---------AHL20(2)           --------->TOE1(3)                                        < ------->ID1  --------->AHL20(2)           --------->TOE2(3)                 --------->AHL20(2)------   ggccttttgacttaaattaaaaacaaataagctttgtatttgaatccttaattattttatttgaagtttagttctctaaataaaaactgatgacaaaaaa  27386700                     ---------->ID1                   --------->MYB52(2)                  --------->SPL7                 <---------MYB52(1)               <---------ANAC58               <---------MYB46(3)           <------MYB83                                                      <---------ANAC58           <------MYB46(1)                                                   <---------ANAC58          <---------TOE2(3)                                                  <-------GAMYB          --------->MYB59    --------->AHL20(1)                             <------MYB46(1)     --------->AHL20(2)      <---------AHL20(1)                             <------MYB83     <---------AHL20(2)      --------->ARR11(3)                             <---------MYB46(3)    --------->AHL20(2)----------->GT1                  ----------->RAV1(2) <---------AtMYB61 --------->YAB1<---------ANAC58                        --------->At4g35610 --------->MYB59 -------TEIL   --------->MYB52(2)           <---------YAB1              --------->ATHB12 --->AHL20(2) <-------TEIL   <---------ARR11(3)      <---------ALFIN1<------ZmHOX2a(1)   aattcataaaattaggttcgttcgtcgtaaaaatatttctgacattataagagaaacacctgaaaattcgaggatgtttggttgtcacgatggattgcaa  27386800               <---------ICU4             <---------ANAC55(2)             <---------TOE2(3)           --------->AHL20(2)           <---------AHL20(2)      <---------ATHB12           --------->AHL20(2)       --------->AHL20(2) ---------->DOF2                 --------->ICU4     ----------->GT1  <---------------------WRI1     ----------->GT1      <-----------HVH21     <----   ---------->DOF2   <----------DOF2        ----------->GT1   <---------AHL20(2)                -----   ttttgcaaagtaattaagtatgactttgaaaagtccaatgttgaagaggttaattttgtaaaaattaaacttatggggtcacattcgaaatatcagcaaa  27386900          <---------MYB46(3)                                                       --------->ANAC46       <---------ANAC46                              <---------AHL20(2)          ---------->DOF2      <---------AtMYB61                             --------->AHL20(2)           <---------DOF5.7(2)      --------->ALFIN1                          <---------AHL20(2)              <---------ARR14(2) --     <---------ZAT14                            --------->AHL20(2)              --------->ARR14(2) --    --------->ALFIN1     ------>MYB83           --------->AHL20(1)             --------->DOF5.7(2) --  --------->ALFIN1       ------>MYB46(1) ----------->GT1    <-------GAMYB     --------->TOE2(3)    <- -----ARR14(2)           -------->P    ----------->GT1     ----------->GT1   --------->ANAC46      <- ---->ARR14(2)       >>>>>>>>>MYB2--------->AHL20(2)<---------AHL20(2)      <---------TOE2(3)     <--   tacagtgtgtggtggtaagagaaaaccaacttgggtttaaatagagaaaataaaataaatggggttaagttcgaaataaacgtaaacgcgagtattaagc  27387000               <---------ARR11(1)               --------->ARR14(2)               ------->TEIL               <---------ARR14(2)               --------->GLK1(2)              <---------CCA1(2)              <---------ARR14(1)          <---------ANAC46   --------->ZAT14                                              -----------         <---------LBD16     <---------ZAT14                                              <---------- ------->GLK1(2)             --------->ZAT18                                   <------MYB83 ----->TEIL--------->LBD16 *TSS                                <---------GLK1(2)         <----------- ------->ARR14(2)  ----------->GT1                  --------->TOE2(3)          <------MYB46(1) --------ARR14(2) <---------HSFB2a(2)               --------->TOE1(3)         --------->MYB59  ------ --------ARR11(1) --------->HSFB2a(2)          ---------->DOF2 <---------ARR11(3)        <----------- -------ARR14(1) <---------LBD16       <----------DOF2         --------->ARR11(3)        <-----------   gaatctggtactgcgcgtatctggaaacaactggactgagtctttccctaaaaaccctaaacatagatttttagtttagtttggtttcatttctcatttc  27387100                                                ------->MYC3                                               --------->ANAC58                                               ===========================bZIP_DOF                                               --------->ANAC58          ------>MYB46(1)                      --------->TGA1a     ------>MYB46(1)                           --------->ANAC46     ------>MYB83                              --------->ANAC55(1)   ------->GAMYB                               <---------TGA1a   <---------MYB59                             --------->O2   --------->AtMYB61                    <---------ICU4  --------->MYB46(3)                 --------->ANAC46 --------->ANAC58                    --------->bZIP60(2)                                           -- --------->ANAC58                  ------->GAMYB<-------MYC3                                    <---- ---->AGL15                        --------->AtMYB61                                            ----- -----AGL15                        ======================MYC_MYB             <---------CCA1(2) ------ ------AGL2                        <---------ALFIN1                       <---------MYB52(1)  ------>NtERF2 --->RAP2.6(3)                    --------->MYB46(3)                     <-----------HVH21   -------- ------AG ------>MYB83    --------->ANAC46     <---------O2         ------>ZmHOX2a(1)        -------- ------AGL1<---------ATHB12----------->RAV1(1)<---------TOE1(2)<----------DOF2              ---------   ggcaaccaaaccaaacattcagagagacacaacacaaccacatcatcacacgtttctctctctctctttcctctccgtcgtctctctctctctagccacc  27387200                                                     --------->ARR14(1)                                                     <------ZmHOX2a(2)                                                    --------->ARR14(2)                                                    --------->AGP1                                                    <---------ARR14(2)                                               --------->MYB52(1)                                               <-----------GT1                                         <------NtERF2                                         <---------At4g35610                                        <<<<<<<<<AtERF-3                                        <<<<<<<<<AtERF-1                                        <<<<<<<<<AtERF-4                                        <<<<<<<<<AtERF-5       ------>ZmHOX2a(1)                <---------ERF1      --------->TOE2(3)                 ------>NtERF2--------->CCA1(2)--------->ANAC58      --------->TOE1(3)                 <<<<<<<<<AtERF-2              --------->ANAC58   <---------ARR11(3)                   <---------RAP2.3(1)         --------->At4g35610 ------->AtMYB61                       <---------ANAC46           <-----------RAV1(2) -----ALFIN1                           <---------RAP2.3(3)      <-----------HVH21 ---->AtMYB61                          <---------DEAR3(1)  --------->ATHB12 --->MYB46(3)                          <---------RAP2.6(2) --------->YAB1                     ------>ZmHOX2a(1) ->RAP2.6(2)                           <---------RAP2.3(2)<---------ATHB12                  <-------- ->ANAC46                             --------->RAP2.6(3) <------ZmHOX2a(2)           <-----------GT1 >MYB46(3)          <----------DOF2 <---------DEAR3(1)------>ZmHOX2a(2)             <----------DOF2   accaaaatccttaaaacctagacttttctcttccatcgatggcggctaataacagatccgatcatgggtcagacgaaaacacaagactttacaatcctta  27387300                                                                                                  ---                                                       ----------->RAV1(2)                       <---                                                     ------>MYB83                               <----                                                 ------>MYB46(1)                                -----                                                 -------->P                                     -----                                                 ------>MYB83                                   <----                                                ------>ZmHOX2a(1)                               <----                                               <---------MYB111(2)                              <----                                               <---------MYB59                   <----------DOF2-----                            --------------->AtSPL8   ------>MYB46(1)        <------ZmHOX2a(1) -------                  --------->YAB1          <---------HSFC1(2)                =========================                 --------->MYB46(3)       --------->HSFC1(2)                =========================                 <---------ATHB12  <----------DOF2 <---------MYB111(1) --------->ANAC46    <---------ANAC46   --------->TOE1(2)    <-----------ARR10--------->ANAC58             <---------LBD16<---------TOE2(3)   --------->TOE2(2) --------->MYB46(3)  --------->ANAC58--------->LBD16    --------->ATERF1(1)<----- -ICU4         --------->WOX13(1) --------->TOE2(3)--------->AtMYB61<---------REM1(2)<---------TOE1(3)   ccaaaactacgaagtcccaatcaacaaatctcagtacctttacaagcttcctacctcccctgagtttctcttcacggaggaggctttaaggcaacgtaga  27387400                                                            <---------HSFB2a(1)                                                            --------->HSFC1(2)          --------->GLK1(2)                                 <---------At4g35610         <---------GLK1(2)                                  <---------ZAT2       ----------->ARR10                                    --------->HSFB2a(1)   <---------ANAC46                                         <---------HSFC1(2)   <---------ANAC58                                      --------->LBD16   <---------ANAC58                                     --------->ETT(1) --->ZmHOX2a(2)                                    <-------GAMYB ---ZmHOX2a(2)                                <------NtERF2<---------ARR14(2) -----AGP1<-----------ARR10                   --------->ATERF1(1) ---->ARR14(3)                               ------>NtERF2<------NtERF2 ---->ARR14(2)                               --------->ABI4(2) -----ARR14(3)                               <---------MYB46(3) -----ARR14(2)                   <---------At4g35610   <---------LBD16                            --- -----ARR11(3)               --------->ARR14(2)  <------NtERF2    <-------GAMYB                   <-- ---->ARR11(3)             --------->LBD16   <---------ATERF1(1) <-----------RAV1(1)       --------->HSFC1(2) ---->ARR10              <---------LBD16    <---------DEAR3(1)--------->GLK1(2)         ---------->DOF2 ====HOX2a_HOX2a       <---------ALFIN1  <---------DEAR3(1)--------->ARR14(2)    --------->ZAT14  --- ===HOX2a_HOX2a       <---------ZAT14-------->P <xxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ZAT14  --- ----CCA1(2)     <----------DOF2 --------->At4g35610<---------MYB52(1)      <---------YAB1 <---------HSFC1(2)   tcttggggtgagaatctcactttctacaccggaacagcttacctcggtggctccgttgccggagcttctgttggagtcatcactggagtcaaaagcttcg  27387500  Previous    Next  AGI:  At1g72740.1    Description:  DNA-binding family protein / histone H1/H5 family protein. similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G17520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65323.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Telomere repeat binding factor (InterPro:IPR013127); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro Range:  from: 27383956    to: 27386586    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72750.1    Description:  ATTIM23-2 (Arabidopsis thaliana translocase inner membrane subunit 23-2); P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G17530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44356.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim23; (InterPro:IPR005681) Range:  from: 27387027    to: 27388186    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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