Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------GLK1(2)                     <----------DOF2                    <---------ICU4                          <-----------GT1                    --------->YAB1                       --------->ATHB12                   <---------YAB1                        <---------ICU4                       -------                 <---------ICU4                         --------->ICU4                     --------->ANAC46                 --------->YAB1                         <---------YAB1                 --------->CCA1(2)      --------->ATHB12   <---------At4g35610         <---------YAB1                <---------WOX13(1)   <---------At4g35610   --------->At4g35610    <----------DOF2<---------DAG2    --------->ATHB12   cttgtagatgatttcttcatcatcatcagcttcttcatcgatgtgcttctcttttctgattattgccttttcagtagtctgtttcattgatatacgatgc  27327300               ----------->GT1            --------->ARR14(2)            <---------ARR14(2)        <---------ICU4                                      --------->ANAC46        --------->YAB1                               --------->bZIP60(1)  --------->TOE2(3)                         <------ZmHOX2a(2)            --------->ANAC58  --------->TOE1(3) ---------->DOF2       --------->At4g35610  <---------ALFIN1                    <- -->AtLEC2 <------ZmHOX2a(1)        ---------->DOF2  <---------bZIP60(1) --------->ANAC58          --   aaaaccttaatcaggatttgaaaaaagaatcaaatcacaaaagcagatcaaaatgaagtcactcaccacatcgtcaagctcgataccgaaactgaaacac  27327400                  <---------At4g35610               ------>ZmHOX2a(1)               --------->LBD16             ----------->RAV1(2)           <-----------GT1   <---------HSFB2a(2)   --------->HSFB2a(2)      ---------->DOF2   ------>ZmHOX2a(1) <-------TEIL   --------->LBD16--------->At4g35610    --------->ANAC58                               <------ZmHOX2a(1) --------ARR14(2) <---------ZAT2         --------->ANAC58                     ---------->DOF2    ---- ------->ARR14(2) --------->ZAT2  <------ZmHOX2a(1)       --------->ANAC46---------->DOF2     >>>>>>>   agttcctcgaatttttcctgagctgcattacaaagaggataagacgaaattagaaaacacacactatgaaatcagagaaagaaagaagaaggagaagaag  27327500                                                                   --------->KAN4(2)                                                                   <---------GLK1(2)                                                                   --------->ARR14(2)                                                                  <----------TaMYB80                                                                  --------->KAN4(1)                                                                  <---------KAN4(1)                                                              <------MYB83                                                              <------MYB46(1)                                                            <--------P                                                          --------->ATHB12                                                          --------->MYB55(2)                              <---------MYB52(2)   --------->ZAT6---------->TaMYB80               --------->ARR14(2)   --------->MYB52(1)    <---------MYB46(3)     <---------ANAC46               <---------GLK1(2)  --------->MYB46(3)     <---------AtMYB61  --------->GLK1(2)              <------ZmHOX2a(1)<---------ZAT18------>NtERF2<-------GAMYB   <---------ARR14(2)      <-----------GT1        --------->At4g35610   <---------ALFIN1<---------ARR14(2)      --------->At4g35610 ----->ARR11(3)<---------ARR14(2) <---------MYB52(2)     <---------YAB1    --------->ARR14(2) >>TBF1 <---------YAB1       <---------At4g35610 ----------->RAV1(1)       <---------GLK1(2)   ------   aaattgaattactataggattctccaagagcagcgaacaaacggtctctgccaacactgatggttggcatattctcagattcttcgtgaaattagcagaa  27327600                            <---------At4g35610                         <<<<<<<<<TBF1                 <---------bZIP60(2)                 --------->bZIP60(1)                 --------->O2                 <---------TGA2(1)                 <---------ANAC46                 <---------ANAC58            <---------ARR11(3)                 <---------O2                --------->ARR11(3)                 --------->TGA2(1)           <---------ARR14(2)                 <---------bZIP60(1)         --------->ARR14(2)                 <---------ANAC58          ----------->ARR10                ----------->STF1         <---------ZAT14                                            <               <---------TGA2(2)         <---------At4g35610                             <---------At5g28300              ----------->TGA1         --------->ZAT18                                  <-----------GT1              ----------->HVH21     --------->ALFIN1                            <---------YAB1      <            <---------At4g35610     <---------ANAC58                         ----------->TGA1<-------            --------->At4g35610     <---------ANAC58     <---------TOE2(3)   ----------->HVH21      - ---->DOF2  --------->CCA1(2) <---------YAB1 <---------GLK1(2)             --------->At4g35610     *TSS   agacagagatagagagatgacgtcttcttcttctgagtgtgtgtgcagattttggaactagggtttcaagaagaagtagatgacgatttttcaccgttac  27327700                                                                                                 <---                                                                                                <----          <-----------GT1                                                               <---------AHL20(2)       --------->YAB1                                                                   --------->AHL20(2)   ----------->TBP                                                                     --------->YAB1   <---------AHL20(2)                                                                 <---------YAB1   --------->AHL20(2)                                                              <---------YAB1<--- ----------->TBP <----------DOF2    <---------YAB1                            --------------->AGL15 ---------AHL20(1)                 <------------CBF                           <---------------AGL15 < ---------ARR11(3)           <---------TOE2(3)                           <------------CBF      <----- --MYB52(1)  ------->GAMYB   <---------TOE1(3)                <---------AHL20(2)   <---------AHL20(2) -------->AHL20(1) <---------AHL20(2)         <-----------GT1--------->AHL20(2)   <---------AHL20(2)-   aatatataaatataaccctcttttattttttaagggttattgttgattttgctatttttcatataaaattttggaaattgctatttttattaaaatttta  27327800                                                                              <---------AHL20(1)         <---------DAG2                                                       --------->AHL20(1)         <----------DOF2                                                      <---------AHL20(2)   ----------->HVH21                                                     --------->AHL20(2) --------->CCA1(2)                                                       --------->AHL20(1) ------TOE2(3)                                                           <---------ARR11(3) -----LBD16     --------->ZAT6                  ----------->GT1          <---------AHL20(1)         - ------ANAC46 <-----------GT1            <---------RVE1(1)--------->ANAC55(2) --------->AHL20(2)    - ---------ARR14(2)                      <---------GLK1(2)<-------TEIL--------->ANAC46 --------->WOX13(1) ------GT1   <-----------GT1            --------->ARR11(3)<---------ANAC55(2)--------->AHL20(2)    -- -------->ARR14(2)                <---------GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <-   cggatatgacactttttaacacttaaaaacatatagatttcagattttttgggtaaaaatacgtagtttacacaaaatattaaattatctatcaatgcca  27327900        <-----------GT1 --------->LBD16                                                <---------AHL20(2) -------->LBD16<-------TEIL          --------->TOE2(3)      <---------AHL20(2) -------->ANAC46--------->ATHB12  <---------CCA1(2)     <----------DOF2 ------->HSFB2a(2)             <----------DOF2    <-----------GT1  <----------DOF2            ------- --------HSFB2a(2)          ------>ZmHOX2a(2)    <-----------GT1<-----------GT1       ---------->DOF2   tcccgaaatataacaaattcattgtttcgatctcttttatcttagttttttttaacctctttttattttctttgccacttcaattgtcaaaagaacaatc  27328000    <------MYB46(1)    <---------ANAC58    <---------ANAC58                                                               <---------AHL20(2)    <------MYB83                                                      <---------AHL20(2)   <---------AtMYB61                                 --------->AHL20(2)    <---------AHL20(2)   --------->MYB46(2)                                --------->AHL20(1)   <---------AHL20(2)   <---------MYB46(3)                          ----------->GT1 --------->AHL20(2)  --------->AHL20(2)   --------->MYB111(1)            <------ZmHOX2a(1) --------->YAB1    --------->AHL20(2)  <------ZmHOX2a(1) -->GLK1(2)           ----------->GT1  --------->TOE2(3) <-----------GT1  --------->AHL20(2)   tgtgtttggtgtctcaaaataagttagaaaataagaggagacctcaatatcgaaaaataatacaatttcatattaattaaatgaataaaataggaaaaca  27328100                                          --------->YAB1                                --------->YAB1                             <----------DOF2                   <---------ANAC58   ------>ZmHOX2a(2)                                          <---                   <---------ANAC46 --------->ARR11(3)                                           <---                   <---------ANAC58 <---------ARR11(3)            <---------AtLEC2               ----                 <---------ANAC46 <---------YAB1        ---------->DOF2  ---------->DOF2         ----   aaattcagccaaaattgttttgtgtgtctgtcttttatgatctctcatagtttttttctaaagtattttcatggacaaagaaaaacagaaaacatcgact  27328200  Previous    Next  AGI:  At1g72550.1    Description:  tRNA synthetase beta subunit family protein. Identical to Probable phenylalanyl-tRNA synthetase beta chain [Arabidopsis Thaliana] (GB:Q9SGE9); similar to unnamed protein product [Vitis vinifera] (GB:CAO67960.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79320.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70290.1); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic; (InterPro:IPR004531); contains InterPro domain Putative DNA binding; (InterPro:IPR009061); contains InterPro domain B3/B4 tRNA-binding domain; (InterPro:IPR005146); co Range:  from: 27323350    to: 27327699    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72560.1    Description:  PSD (PAUSED); tRNA binding. similar to hypothetical protein [Vitis vinifera] (GB:CAN81593.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ66174.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45614.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain HEAT (InterPro:IPR000357); contains InterPro domain Exportin-1/Importin-beta-like (InterPro:IPR013598) Range:  from: 27328051    to: 27333129    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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