Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->ANAC46                                                                             <---------ANAC55(2)                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                  <---------CCA1(2)                                                                <---------ANAC58                                                                --------->ANAC55(2)                                                                <---------ANAC58                                                                <---------ANAC55(1)          <-------                                                                <---------ANAC55(2)------->GAMYB    ------->GAMYB                      --------->AHL20(2)       <---------ANAC46---------->DOF2   --------->MYB46(3)<-------TEIL    --------->AHL20(2)<---------YAB1        --------->ANAC55(2) --------->YAB1  <-------TEIL     --------->YAB1     <-----------GT1         --------->ANAC55(1) --->ZAT6    <-------TEIL  ----------->GT1 --------->CCA1(2) <---------MYB52(1) --------->MYB52(1)   ctataaccatcaacatacatacatacagatagtttatcaaaaaatatacgagaaattaccatcgttgcgtctcttgaagacgtaacgctccatctggtaa  27248400                                                                                     --------->ARR11(3)                                                                                     --------->AGP1                                                                                     --------->ARR14(2)                                              <---------TGA2(1)                      <---------ARR11(3)                                              <---------bZIP60(1)                   --------->GLK1(1)                                   --------->ANAC46                          <---------ZAT2                                 <---------ALFIN1                            --------->At4g35610                                 --------->ANAC58  <---------At4g35610       <---------At4g35610 <---                              <------NtERF2------>ZmHOX2a(1)             <----------CDC5  <---------MYB52(1)                             --------->RAP2.6(2)   --------->ZAT2       --------->At4g35610     <xxxx                            --------->ANAC46 <<<<<<<GRF7                <---------At4g35610    ------                           <---------At4g35610--------->TGA2(1)    <---------ZAT2   --------->At4g35610                           --------->At4g35610--------->bZIP60(1)  <---------At4g35610 <-------TEIL                         ---------->CDC5  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ZAT2   -------                       --------->TOE1(3) ----------->RAV1(2)       --------->ZAT2<---------At4g35610   --------->ICU4      --------->TOE2(3) <---------ICU4            --------->At4g35610<------ZmHOX2a(2) --MYB52(1)          ------->TEIL--------->ANAC58  --------->At4g35610--------->ZAT18<---------ARR14(2)   ttgcaattcttggttccaagatgaacctcagcggcacacatcatcctgacatcagcttccttctgagagagctgcgctgagctagcagatccattagtcg  27248500                                                                                     --------->ANAC58                              <------NtERF2                                          --------->ANAC58                             --------->HSFB2a(2)                                    <------NtERF2                             --------->LBD16                                       ------>NtERF2                             ------>NtERF2          <----------DOF2               ----------->HVH21                            <---------LBD16------>NtERF2                          <---------DEAR3(1)      <---------CCA1(2)     --------->LBD16<------NtERF2                  --------->ANAC46 ---NtERF2           <<<<<<<<<TBF1         --------->LBD16                --------->ANAC58 xxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------LBD16                  --------->ANAC58   *TSS --->ANAC46       <<<<<<<<<TBF1       --------->MYB46(3)          ---------->DOF2 <----------ID1 --->ID1<---------CCA1(2)  <---------LBD16--------->DEAR3(1)   ----------->GT1    --------->DEAR3(1)   ccattttcttatctctcttcttcttcttcgccgggaactaatcgccgcgataagcttttttcactcagtaaatcacacgaagaggcgacgaaaggcttat  27248600                                                                                                    -                     --------->ANAC58                                                              --                     --------->AtLEC2                                                        --------                     --------->ANAC58                              <---------MYB52(1)       ---------              <---------------AGL15                                --------->ARR14(2)     --------->MYB52(1)           <---------AHL20(2)                                     <-------GAMYB         <---------MYB52(2)          <-----------TBP    --------->TOE2(3)            <---------ALFIN1             <---------At4g35610       <------ZmHOX2a(1)     --------->TOE1(3)           --------->LBD16      <---------AHL20(2)   <-     <---------TOE1(3) --------->YAB1                   --------->ANAC46      --------->AHL20(2)  ---  --------->ALFIN1  --------->WOX13(1)               -------->P   <-----------HVH21    --------->At4g35610   aagggtgaaggattttatatatcaagcaaaaccctaatttgcaaaatgtctattctacccccaaactcggttacccaaattttaatcgaagctaaccaaa  27248700   <-----------GT1                             <---------ZAT18 -------->YAB1                                 <---------ZAT14 ------->AHL20(2)                              --------->ZAT14 ->TOE2(3)               ---------->ID1        --------->ZAT18          <----------DOF2 >MYB46(3)          <---------MYB52(1)       --------->ZAT18    --------->ARR11(3) --------AHL20(2) <---------ANAC58           <---------ZAT18    <---------ARR11(3)  <----------DOF2 ------>AHL20(2)  <---------ANAC58  --------->GLK1(1)       ---------->DOF2    <---------At4g35610>>>   attaataactggttcaacttccgttttgtcttaaaccgaaatccaagtgtgcacagagacacaaaagataatttctttttctgctactttgaagttagaa  27248800                                                                       <-----------GT1                                                              <---------O2                                                              <---------TGA1a                                                              <---------ZAT2                                                              --------->O2             <---------ICU4                                   --------->ZAT2          --------->YAB1                                      ----------->RAV1(2)         --------->ZAT6               ------>ZmHOX2a(2)       --------->TGA1a        ------------>CBF <----------DOF2                    <---------ALFIN1                     <---    --------->TOE1(3)    ===============================================bZIP_DOF                 ---- >>>>>>TBF1  --------->YAB1*TSS      <------ZmHOX2a(2)   <-----------GT1                <---------YAB1   gaagaaccctaacaataatctctcttcctttctcttccgatcgcatcttcttcaaaaatttcccacctgtgtttcacaaattccatgtttatgaattctt  27248900                                                            <---------ARR11(3)                                                            <-----------ARR10                        <---------GLK1(1)    <------ZmHOX2a(2)                      ----------->GT1         --------->TOE2(3)                  <---------ARR14(2)                     --------->DAG2 ------ICU4        <----------DOF2          --------->ARR14(2)------>ZmHOX2a(2)    <---------TOE1(3) ----->ATHB12  <-----------GT1    <----------DOF2           --------->ARR11(3)     <---------TOE2(3)   cattgctctattcttagtcacctttgatttctctcgctttctatccgatccaattgtttgatgatcttctctgtaacaagctcataaggtttcaatttct  27249000                                                                                                    <                                                   <-----------GT1                             <-----                                               <---------AHL20(2)                              <-----                                           <----------DOF2           --------->ZAT6          --------             <-------TEIL              <---------CCA1(2)           <-----------GT1          <-------TEIL     --------->TOE2(3)               <---------ANAC58      <---------ANAC46              --------->At4g35610  <----------DOF2                    <---------ANAC58      ----------->GT1               <---------At4g35610   ctagctttcttaaaattcattcttcgatttcttcaattctcgtgtcttttttatttctgtatcgtttattgacagtacctagacaggtttgagcttcatc  27249100                                            --------------------->WRI1                                           <------MYB46(1)                                           <------MYB83                                           ----------->GT1                                           <---------MYB46(3)                                          <---------MYB46(3)                                          --------->MYB111(2)                                          --------->MYB111(1)                                          <---------AtMYB61                                          --------->MYB59                                          --------->MYB46(2)                                         <--------P                                       --------->HSFC1(2)                                       --------->HSFB2a(1)                                       <---------HSFB2a(1)                                       <---------HSFC1(2)                                      <---------TOE1(2)                                      <---------TOE2(2)                                      <---------TOE1(3)                                            --         <---------ARR14(2)           <---------TOE2(3)                                            --         --------->ARR14(2)    --------->ARR11(3)                                                ----         --------->GLK1(2)     <---------ARR11(3)                                             ------- ---------LBD16              <---------TOE2(3)                                           <---------GLK1(2) ----CCA1(2)           <---------ANAC46<---------MYB46(3)        --------->GLK1(1)     <---------YAB1 ----At4g35610  <---------ANAC58--------->CCA1(2)               <---------ARR11(3)     ------>ZmHOX2a(1) ->REM1(1)      <---------ANAC58--------->GLK1(1)               --------->ARR11(3)   ----------->RAV1(2)   tctctggagagaatccatgggtgtctcgtttaagatatcgaaggttggtagaaagtttcgacctaagatttctactgaattggctactcctgattcccca  27249200                                                                                      ----------->GT1                                                                                    ---------->DOF2    <---------ATHB12                                                       <---------------AGL15 ------->ANAC58                                                            --------------->AGL15 ------->ANAC58           ----------->GT1                                 <-----------------AGL3 ------>DOF2           ---------->DOF2                                    <-----------------AGL1 -->LBD16      --------->LBD16  <---------AHL20(2)                        <-----------------AG-------   aaagcaatcgttctatctgggaaaccaaaggtaatttaacttagaattttagttgtattgtgttccaactaaattcgcttattttggaaagttatataga  27249300  Previous    Next  AGI:  At1g72370.1    Description:  P40 (40S ribosomal protein SA); structural constituent of ribosome. Identical to 40S ribosomal protein Sa-1 (RPSaA) [Arabidopsis Thaliana] (GB:Q08682;GB:Q93V81); similar to RPSAB (40S RIBOSOMAL PROTEIN SA B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04770.2); similar to 40S ribosomal protein SA (p40) (Laminin receptor-like protein) (GB:Q9ZSR8); contains InterPro domain Ribosomal protein S2, eukaryotic/archaeal; (InterPro:IPR005707); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) Range:  from: 27246605    to: 27248593    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72390.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO45587.1) Range:  from: 27248827    to: 27255238    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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