Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <------NtERF2          ------>NtERF2         --------->DEAR3(1)         <---------ANAC46        --------->ATERF1(1)        ------>NtERF2              --------->LBD16        --------->RAP2.3(1)       --------->ANAC46            --------->ARR11(3)        --------->RRTF1(1)    --------->ATERF1(1)             <---------ARR14(3)        <------NtERF2        <---------ATERF1(1)              --------->ARR14(3)       <---------ATERF1(1)<-----------HVH21                   <---------ARR11(3)       <---------DEAR4(2)--------->O2                         --------->ARR14(2)       <---------ORA47(2)<---------O2                         --------->GLK1(2)      <---------DEAR3(1) <---------bZIP60(1)               *TSS      --------->ANAC46   --------->bZIP60(1)             <------ZmHOX2a(2)      --------------->AtSPL8     <---------LBD16--------->MYB52(1)                <---------MYB46(3)     <---------TOE2(3)   ctaagaacgcggcgcagagacaaaacgacgtcgtctccgaaactcttggtatacgttggatcaaaatcttcgatgttttgacgttgtacaaattttctaa  27236700                                                    --------->CCA1(2)                                              <---------ANAC58                                              <---------ANAC46                                              <---------TGA1a                             ------>MYB83                                              <---------ANAC58                          <---------MYB59                         ------>MYB83         <---------bZIP60(2)                       <---------MYB46(2)                         ------>MYB46(1)      ===================================bZIP_DOF ------>MYB46(1)                       <---------MYB59        <---------O2                             --------->DEAR3(2)                       --------->TOE2(3)      --------->O2                   --------->YAB1<---------                     -------->P            ----------->HVH21                 <-----------GT1<--------                     ------>MYB83          ----------->TGA1   <---------ATHB51        <---------At5g28300  <---------TOE1(2)  ===================================MYC_MYB       <----------DOF2<-----------GT1 ------>ZmHOX2a(1)   ------>MYB46(1) <---------MYB52(1)       <---------ATHB12 <---------YAB1<-------   ttcctagggttttattctcgtccaacctaatacgatatcgttttgttgacgtggatataaacaaataatgggctttaaatcacgattttaccgacctttt  27236800                                               --------->At4g35610                                               <---------At4g35610    --------->AHL20(2)       <---------ATHB12                     <---------At4g35610   <---------AHL20(2)             <--- <---------ZAT18                           --------->ALFIN1       --------->AHL20(2)         -------- --------->ZAT18                  --------->DOF5.7(2)            <---------AHL20(2)   --------->HSFB2a(2) --------AGL1                     <---------MYB52(1)         <---------YAB1       --------->GLK1(1) < -DAG2 <---------ATHB51          --------->TOE2(3) --------->REM1(1)  <---------AHL20(2)     <------- ---DOF2--------->YAB1     --------->TOE2(3)--------->At4g35610  --------->AHL20(2)   <---------HSFB2a(2)   tagggcccaattatgtagcccaaaaaaaacctcatcgttagcaatgtgctgctacatgttgttgtgatttatttaaatttagagatttctaaaaatttat  27236900                                                                                    <----------DOF2          --------->At4g35610                                           <---------AHL20(2) --------GT1                                                  <---------WOX13(1)    ------>ZmHOX2a(1) ->AHL20(2)                                                 --------->ATHB12     ---------->ID1     < ----------DOF2 <------MYB46(1)         --------->LBD16    <---------YAB1     --------->MYB59       < --AHL20(2)     <------MYB83--------->GLK1(2)        <---------YAB1 --------->KAN4(1)               <   aactttcaaattagctgtaggttttataagtatctatttatccccaaattagattacgactgtgattggattattcaattttggtccttttggataatta  27237000                                                                  <---------TOE1(2)    ------->GAMYB                                                <---------ANAC46   --------->ANAC46                                            <---------ANAC58                   <--  --------->At4g35610                          --------------->AGL15                             ---- <---------DOF5.7(2)                ---------->DOF2            <---------ANAC46                 ----- --------->MYB52(1)            <---------YAB1  <----------DOF2 <---------ANAC58                 ----- ---------WRKY45         <----------DOF2       <---------------AGL15                            ----- ---------WRKY12      --------->ARR11(3)      <-----------------AGL2                          ------- ---------WRKY38(1)   <---------ARR11(3)      <-----------------AGL3                         <-------   agtcaacggaagatagacttcagacatctttttttgataaaagacatgtctttttttgggattagtcgtgtgtttaacagataaatcaacaaaattagcc  27237100                                   <---------ARR11(3)                                   <---------GLK1(2)                                   --------->ARR11(3)                                 ----------->ARR10                                  ----------->GT1                             --------->WOX13(1)                                    --------->ANAC58 ----NtERF2                ------------>CBF                --------->ANAC58        --------->ANAC58 -->NtERF2          <---------ARR11(3)                     --------->ANAC58    <------ZmHOX2a(1) ---->RAP2.6(2)     --------->ARR11(3)                   ---------->DOF2      <----------ID1 ---->RAP2.3(2)     --------->ARR14(2)               <----------ID1       --------->ALFIN1          < ---->DEAR3(1)     --------->CCA1(1)         ----------->GT1            <---------ANAC46      <------ -->At4g35610      --------->RVE1(1)       ---------->DOF2--------->DAG2<---------ANAC58      <------ ----GT1       ----------->TBP  --------->YAB1 *TSS--------->MYB52(1)   <---------ANAC58      <------   gcctaaaaaaaacccctacaaatatcttcatcaattagattttcgaaaagaaaaaacgaaaaagcaatttctgagcgtggaggacaaggcaaaattcggt  27237200                                                                     <-------MYC3                                                                     <-------PIF5                                                                     <-------MYC2                                                                     ------->PIF5                                                                     ------->MYC2           <---------ARR14(2)                                        <-------MYC4  <---------At4g35610  --------->ANAC46                                                  --------->HSFB2a(1)            --  --------->ANAC58                                                  --------->ANAC58              <--  --------->ANAC58                                                  --------->ANAC58             <--- ---------AtLEC2                         <---------KAN4(2)          <---------HSFB2a(1)       <------ ---ANAC46 --------->ARR14(2)    <-----------HVH21        <----------DOF2 ------>ZmHOX2a(1)   ------- ---ANAC58 --------->ARR11(3)   --------->O2<-----------GT1 ---------->DOF2     ---------->DOF2  <--- ---ANAC58 <---------ARR11(3)  ------>ZmHOX2a(1)    ------>ZmHOX2a(1)------->MYC3--------->DAG2<-----   gtgcaaggcactggatattgggacccttgtttcctcgtgagagaattttcaatcctagggcttaaagagcacgttcctagtataaagctgattcacagat  27237300           <---------WOX13(1)    --------->GLK1(2)   <---------GLK1(2)             <---------ETT(2)   <---------ARR14(2)            --------->DEAR3(1)  --------->HSFB2a(1)            --------->WRKY12  --------->GLK1(1)       --------->ARR11(3) ----------->ARR10    ---------->DOF2 ------->LBD16        --------->MYB52(1) -------ANAC46    ------>MYB83   --------->WRKY38(1)                                         -------- ------LBD16      --------->ANAC58                                                         --------->TOE2(1) ---At4g35610     --------->ANAC58                                                    <---------ALFIN1 -->At4g35610     ------>MYB46(1)--------->ETT(2)                                   ------>ZmHOX2a(1) ----TEIL--------->ATHB12 <---------ARR11(3)                  ---------->DOF2      --------->ANAC46 ----ARR14(2)<-----------GT1  <---------ANAC46      <---------ICU4       <----------DOF2   --------->TOE1(1)   gcggagattcttgattaaccaagctaaaggtctcgtcgaccattctcgtcgtcaacatcaccacaaaagtccaagctttctctctcctcaacctcgtccc  27237400              ------>ZmHOX2a(1)            ----------->RAV1(2) <---------ANAC58                                          <---------YAB1                          -- <---------ANAC58         <---------CCA1(2)           <---------At4g35610         <---------MYB52(1) -->ID1    ------>ZmHOX2a(1)              <---------LBD16<---------At4g35610    --------->ANAC46 <---   cttgcttcttctcctcctgctctgtctcgtttcttctcttctacttcggagatgtctgcttctgattccacttcttctcttcccgttactcttgactcca  27237500                                       <---------ANAC46                                       <---------ANAC58                  --------->ARR14(2)           <------MYB83                <---------ANAC58                  <---------ARR14(2)           <---------DEAR3(2)     --------->ATHB12                 --------->ARR11(3)           <---------MYB46(3)   <----------DOF2                    <---------AGP1           <------MYB46(1) <---------At4g35610                   ----------->ARR10             ------          <---------DEAR3(1)  ----------->GT1                   <--------P                    ------- ------->WOX13(1)          --------->ZAT2                  <---------LBD16        --------------->AGL15 ------ATHB12              <---------ZAT2           <---------ANAC46 ------>ZmHOX2a(2)  ----------->GT1   tcaatcccaaggtcggtttctaattctctagctggtttattgcgtttttgaattgtgggtttcagggttgatctggatttgtttctaatttagtaaaaaa  27237600  Previous    Next  AGI:  At1g72320.1    Description:  APUM23 (ARABIDOPSIS PUMILIO 23); RNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO45541.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79607.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 27232522    to: 27236659    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72330.1    Description:  ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase. similar to ALAAT1 (ALANINE AMINOTRANSFERAS), alanine transaminase [Arabidopsis thaliana] (TAIR:AT1G17290.1); similar to alanine aminotransferase [Capsicum annuum] (GB:AAR05449.1); similar to alanine aminotransferase 1 [Glycine max] (GB:ABW17196.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45546.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdoma Range:  from: 27237147    to: 27240450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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