Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>MYB46(1)                            ------>MYB83                --------->ATHB12                                                                 ----                <--------ATHB1                                                                   <---     ------>ZmHOX2a(1)     ----------->RAV1(1)                                                   <---     <---------HSFB2a(2)   --------->MYB52(1)                 <<<<<<<<<MYB98                     ----     --------->HSFB2a(2) --------->MYB46(3)     ------>ZmHOX2a(1)<-----------GT1   --------->ANAC58  ------>NtERF2--------->ICU4 ------->GAMYB--------->KAN4(2) --------->TOE2(3)     --------->ANAC46 ->ZmHOX2a(1)  <---------ATHB12       --------->AtLEC2<---------ALFIN1             --------->ANAC58   gtgcctcctagatggcaatgatttagaaccaacagaaaccatgaaaattcctagccccaactatgttaaaccctacaaaatttacacacaaaaaaactca  27236300                                                ----------->GT1                                               --------->DAG2                                        --------->DAG2      <---------ARR11(3)            <---------------AGL15 ----->ZAT2                         ================================================================= ------At4g35610                    --------------->AGL15                                         --- ------ZAT2                    --------->AHL20(2)  <-------TEIL       <-----------GT1   <---------TOE1(3) ----->At4g35610       <-----------GT1 ---------->DOF2  --------->AHL20(2)              <---------TOE2(3)   gcttcgaagaactattagtcccaaattacacaatataacaaaaaagggaaaggttcaattttttctccaaatttacagaccccaaaaattagggtttcta  27236400                                    <---------MYB59                          <-------GAMYB                    <---------ARR14(2)                    --------->ARR14(2)                 --------------->AGL15                 <---------------AGL15             --------->AHL20(1)                 --------->TOE1(3)  --------->TOE2(3)     --------->LBD16                 --------->TOE2(3)  --------->TOE1(3)    <---------ANAC58                <-----------------AGL3             <---------AHL20(2)                ----------------->AGL2             --------->AHL20(2)                            <--- ================================MADS_MADS         <---------AHL20(1)           --------->ZAT6   <--- ------>ZAT6    <-----------------AGL2    --------->YAB1 <---------ANAC58   <----------DOF2 ---------   cctctacttcaaaacgataccataactgggttgaataacctaaaacataacaataaattccgagtcccaattctaagactttacactaatccatgtgaag  27236500                                                                                          --------->At4g35610                                                                       <------ZmHOX2a(1)  <---------ZAT2                                                              <---------TOE2(3)           <---------At4g35610                                                              <---------TOE1(3)           --------->ZAT2                                                            ----------->HVH21         <-----------HVH21     ---------->DOF2     --------->ALFIN1   <------ZmHOX2a(1)<---------DOF5.7(2)     <---------ANAC58 ------ANAC58         --------->DAG2  <----------DOF2     <---------At4g35610        <---------ANAC58 ------ANAC58         <---------TOE2(3)   <---------TOE2(3) --------->WRKY12     --------->MYB46(3) -->HVH21   ----------->GT1          --------->TOE2(3)    --------->At4g35610<---------MYB52(2)   cttgtacaaaagaacagaaacaataaggtgtatcacaaacctttgaggatgcaaaaacacagttgacgttagaggagaaacgaacaagcgtgagctcaga  27236600           <------NtERF2          ------>NtERF2         --------->DEAR3(1)         <---------ANAC46        --------->RAP2.3(1)        --------->RRTF1(1)         --------->LBD16        --------->ATERF1(1)       --------->ANAC46            <---------ARR14(3)        ------>NtERF2         --------->ATERF1(1)             --------->ARR14(3)        <------NtERF2        <---------ATERF1(1)              --------->GLK1(2)       <---------ATERF1(1)<-----------HVH21                   --------->ARR14(2)       <---------DEAR4(2)--------->bZIP60(1)                  <---------ARR11(3)       <---------ORA47(2)<---------bZIP60(1)                  --------->ARR11(3)      <---------DEAR3(1) <---------O2                      *TSS      --------->ANAC46   --------->O2                    <------ZmHOX2a(2)      --------------->AtSPL8     <---------LBD16--------->MYB52(1)                <---------MYB46(3)     <---------TOE2(3)   ctaagaacgcggcgcagagacaaaacgacgtcgtctccgaaactcttggtatacgttggatcaaaatcttcgatgttttgacgttgtacaaattttctaa  27236700                                                    --------->CCA1(2)                                              <---------ANAC58                                              ===================================bZIP_DOF                                              <---------O2                                ------>MYB46(1)                                              <---------bZIP60(2)                         ------>MYB83                         ------>MYB46(1)      --------->O2                              <---------MYB59                         ------>MYB83         <---------ANAC58                          <---------MYB46(2)                       <---------MYB59        <---------TGA1a                          --------->DEAR3(2)                       --------->TOE2(3)      <---------ANAC46               <-----------GT1<--------                     -------->P            ----------->TGA1                  --------->YAB1<---------                     ------>MYB46(1)       ----------->HVH21  <---------ATHB12        <---------At5g28300  <---------TOE1(2)  ===================================MYC_MYB       <----------DOF2<-----------GT1 ------>ZmHOX2a(1)   ------>MYB83    <---------MYB52(1)       <---------ATHB51 <---------YAB1<-------   ttcctagggttttattctcgtccaacctaatacgatatcgttttgttgacgtggatataaacaaataatgggctttaaatcacgattttaccgacctttt  27236800                                               --------->At4g35610                                               <---------At4g35610    <---------AHL20(2)       <---------ATHB12                     <---------At4g35610   --------->AHL20(2)             <--- --------->ZAT18                           --------->ALFIN1       <---------AHL20(2)         <------- <---------ZAT18                  --------->DOF5.7(2)            --------->AHL20(2)   --------->HSFB2a(2) -DAG2 <---------ATHB51           <---------MYB52(1)         <---------YAB1       --------->GLK1(1) < --------AGL1                    --------->TOE2(3) --------->REM1(1)  --------->AHL20(2)     -------- ---DOF2--------->YAB1     --------->TOE2(3)--------->At4g35610  <---------AHL20(2)   <---------HSFB2a(2)   tagggcccaattatgtagcccaaaaaaaacctcatcgttagcaatgtgctgctacatgttgttgtgatttatttaaatttagagatttctaaaaatttat  27236900                                                                                    ------>ZmHOX2a(1)          --------->At4g35610                                           <---------AHL20(2) --------GT1                                                  <---------WOX13(1)    <----------DOF2 --AHL20(2)                                                 --------->ATHB12     ---------->ID1     < ----------DOF2 <------MYB46(1)         --------->LBD16    <---------YAB1     --------->MYB59       < ->AHL20(2)     <------MYB83--------->GLK1(2)        <---------YAB1 --------->KAN4(1)               <   aactttcaaattagctgtaggttttataagtatctatttatccccaaattagattacgactgtgattggattattcaattttggtccttttggataatta  27237000                                                                  <---------TOE1(2)    ------->GAMYB                                                <---------ANAC46   --------->ANAC46                                            <---------ANAC46                   <--  --------->At4g35610                          <----------DOF2 <---------ANAC58                  ---- <---------DOF5.7(2)                ---------->DOF2            <---------ANAC58                 ----- --------->MYB52(1)            <---------YAB1  --------------->AGL15                            ----- ---------WRKY12         <----------DOF2       <---------------AGL15                            ----- ---------WRKY45      <---------ARR11(3)      <-----------------AGL2                          ------- ---------WRKY38(1)   --------->ARR11(3)      <-----------------AGL3                         <-------   agtcaacggaagatagacttcagacatctttttttgataaaagacatgtctttttttgggattagtcgtgtgtttaacagataaatcaacaaaattagcc  27237100                                   --------->ARR11(3)                                   <---------ARR11(3)                                   <---------GLK1(2)                                 ----------->ARR10                                  ----------->GT1                             --------->WOX13(1)                                    --------->ANAC58 ----NtERF2                ------------>CBF                --------->ANAC58        --------->ANAC58 -->NtERF2          --------->ARR11(3)                     --------->ANAC58    <------ZmHOX2a(1) ---->RAP2.6(2)     <---------ARR11(3)                   ---------->DOF2      <----------ID1 ---->RAP2.3(2)     --------->ARR14(2)               <----------ID1       --------->ALFIN1          < ---->DEAR3(1)     --------->CCA1(1)         ----------->GT1            <---------ANAC58      <------ -->At4g35610      --------->RVE1(1)       ---------->DOF2--------->DAG2<---------ANAC58      <------ ----GT1       ----------->TBP  --------->YAB1 *TSS--------->MYB52(1)   <---------ANAC46      <------   gcctaaaaaaaacccctacaaatatcttcatcaattagattttcgaaaagaaaaaacgaaaaagcaatttctgagcgtggaggacaaggcaaaattcggt  27237200  Previous    Next  AGI:  At1g72320.1    Description:  APUM23 (ARABIDOPSIS PUMILIO 23); RNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO45541.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79607.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 27232522    to: 27236659    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72330.1    Description:  ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase. similar to ALAAT1 (ALANINE AMINOTRANSFERAS), alanine transaminase [Arabidopsis thaliana] (TAIR:AT1G17290.1); similar to alanine aminotransferase [Capsicum annuum] (GB:AAR05449.1); similar to alanine aminotransferase 1 [Glycine max] (GB:ABW17196.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45546.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdoma Range:  from: 27237147    to: 27240450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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