Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->ARR11(3)                                                                           --------->ARR14(3)                                                                           <---------ARR11(3)                                                                           --------->ARR14(2)         <---------AHL20(1)                                                <---------ARR14(3)   ----- ------------->AGL15 --------->ZAT6                                        <---------ARR14(2)   ----- -------ANAC58  --------->YAB1                                             <---------AHL20(1)   ----- -------ANAC58 <---------YAB1                    ----------->GT1           --------->AHL20(1) ------- ---DAG2 <---------AHL20(2)                     ----------->GT1           <---------CCA1(2)  <------- ----DOF2--------->AHL20(2)                    --------->DAG2    <---------ZAT6          ---------->DOF2 --GT1  --------->AHL20(2)                   ---------->DOF2 <---------ZAT14      ---------->DOF2   -   tcttgttatattaaattttcataacacaattaagagggtcgatttcgaaaaggttaaaaatagtggagagttaccaatatcttgaaaagactaaagaatc  27229200                                                                                             <-------                                                                                            ---------                           <---------ICU4                                                   <--------                           <--------HAHB4                                               --------->AHL20(1)                     --------->ANAC58                   ------>ZmHOX2a(1)              --------->AHL20(2)                     --------->ANAC46                  --------->TOE2(3)               <---------AHL20(2)                     --------->ANAC58                  --------->TOE1(3)           --------->AHL20(2)                    --------->ZAT18                 <---------ARR11(3)             <---------AHL20(2)       ----------->GT1    <---------YAB1            <---------ARR14(2)             <---------YAB1  <- ---->TOE2(3)     <---------ZAT14                   --------->ARR14(2)            --------->AHL20(2) ---->YAB1        --------->ZAT14                  <---------CCA1(2)              --------->AHL20(1) ---->TOE1(3)     <---------ZAT18             --------->ANAC46     --------------->AGL15<---------AHL20(2) -->GLK1(2)   <---------ICU4             --------------->AtSPL8    ================================== --GLK1(2) --------->WOX13(1)<---------YAB1  ------->TEIL          <---------------AGL15--------->AHL20(2) --------->DOF2   --------->ZAT18        <---------------AtSPL8 <-----------GT1   <---------AHL20(1)   ttaaaagatgtgtaaatcagtgcacaccatcattttagactataatgtactccatatccttagaaattactactatttgcaaaatataattttattaatt  27229300         --------->TOE2(3) --------->ATHB51   --------->MYB52(2)      --------->YAB1 --AHL20(2)                -------->ATHB1 >AHL20(2)              --------------->AGL15          --------->ICU4 -AHL20(2)  --------->YAB1<---------YAB1          ----------->GT1 --------YAB1     --------------->AtSPL8--------->AtMYB61     --------->AtLEC2 <----------ID1 =======================================MADS_MADS --------->YAB1            ---------->DOF2       <--   catgtttgtttcattaacaatttgtactattattgtgaaacacctaaacctatagtaattagtcatacaaaacaaaaaaaaagaacaaaatgtagttagt  27229400                                                                   --------->ANAC58                                                                   --------->ANAC46                           <---------HSFB2a(2)                     --------->ANAC58                           --------->HSFB2a(2)                     --------->ANAC55(2)          <----                     <---------ICU4                              <-----------GT1       <------MYB83                 <------ZmHOX2a(1)                            ------->TEIL             <------MYB46(1)              <------ZmHOX2a(1)                         <----------ID1                --------->MYB59 -------YAB1--------->ALFIN1                         ----------->TGA1       ---------->DOF2    ------   atttttgtaatggagaggaggaagcattaccagaaaaactgagtaatggaaaacgatgacgacgaatttacgcactaacaaagaaaatttggtcgactaa  27229500                                                --------->ANAC46                                           <---------TCP20                  --------->At4g35610      --------->PCF2   <------ZmHOX2a(1)               --------->ZAT14 --------->MYB59  <---------At4g35610   <---------ZAT18                                         <---- -----TOE2(3)    ----------->ARR10 <---------ZAT14         *TSS    <<<<<<<<<TBF1            <-------- ---->DOF2 --------->ALFIN1   ------------>CBF<---------ALFIN1  <<<<<<<<<TBF1          ---------->ID1   agttaggaagagagtaggggagctactctaatttcaatacactgggctccactctattcttccttcttcttcttcttatgccttccttcgtcttctttcc  27229600                                                <----------DOF2                                             ---------->ID1                                            <-----------GT1                              <----------DOF2<-----------GT1   <------NtERF2        <-----------GT1 <---------MYB52(1)     <---------CCA1(2)    ------>ZmHOX2a(1) -----AtLEC2     <-----------GT1  <----------DOF2     <----------DOF2      <---------At4g35610 --DOF2      <---------WOX13(1)  <------------------------ANAC81       <----------DOF2 ------>ZmHOX2a(1)   atggcagagacacagattgatacaattcactcctttctttctgttttttcctttccctttctctcatctctctctttagctacttcctcctcccataaac  27229700                                                                                 <---------AHL20(2)                                                                                 <-----------GT1                                                                          ---------->ID1                  --------->ZAT2                                        --------->MYB52(2)                  <---------ZAT2                                        <-----------RAV1(1)                  <---------At4g35610                                   <---------MYB46(3)                  --------->At4g35610                <---------ZAT2   ------>ZmHOX2a(1)         --------->ZAT14                             --------->ZAT2   <----------DOF2      --------->ANAC58 ----------->RAV1(1)        <---------ANAC58   --------->TOE2(3)      --------->ANAC58<---------ALFIN1            <---------ANAC58 <---------ATHB12 <----------DOF2 <   cctctaccaagtaaactctcagctccaccattaacacatctcggtctcaattccgagctctgtattccaatcctttgttgcatttactttctgggttttt  27229800                                 ---------->DOF2                               <---------MYB55(2)                               --------->MYB46(3)                              --------->ANAC46                              --------->ANAC58                              --------->ANAC58                             ------>MYB46(1)                             ------>MYB83                            <---------ALFIN1                           <---------MYB111(1)                           <---------MYB55(2)                           --------->MYB46(3)                          --------->ANAC58                          --------->ANAC58                          --------->DEAR3(2)                         --------->PCF2                       <---------ANAC58                      <---------ANAC58                        <---------ANAC58                    <--                      <---------ANAC58  ---------->DOF2<---------ANAC58          --------->ANAC46 ---              <-----------------AGL1 ----------->GT1   <---------ANAC46 <----------DOF2          <---     <---------YAB1  <---------------AtSPL8            <---------ANAC58<---------ANAC58--------->TOE2(3) ---------AHL20(2)   --------------->AtSPL8         <----------DOF2    <---------ANAC58--------->TOE1(3)   gtttattttgattttcttccatttgggtacccacccaaagagtaaagtttcaagctttcgtggtacttgctatgctttccctcacaaaaccctaatttca  27229900                                                                             ------>MYB83  ------>ZmHOX2a(1)                                                          ------>MYB46(1) --------->TOE2(3)                                                         --------->AtMYB61     <--- --------->TOE1(3)                                                         <---------MYB59    ------- -------ARR14(2)                                                        <-----------GT1<-------GAMYB ------>ARR14(2)          --------->At4g35610                   --------->TOE2(3)     <-----------RAV1(1) ------CCA1(2)            <---------At4g35610       <XXXXXXXXXXXXXXXXXXXXMIR3933   --------->GLK1(2)   tatccttatccaattccatgttttgctctgctcaactctctgtttctacttctgaatcgtcgttttccttcatataaccaaaccaattctgttgaatcat  27230000                                                                                    --------->YAB1                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR11(3)                                                                             <---------AGP1        <-                                          ------>ZmHOX2a(2)                  --------->ARR11(3)    <-                                        <---------ARR11(3)                   --------->ARR14(2)    <-        --------->ATHB12                --------->ARR11(3)                   --------->AGP1        <-       <-------TEIL             --------->DAG2     --------->ARR14(2)   --------->YAB1            <-- ------ICU4          <---------------AtSPL8        <---------ARR14(2)  <---------YAB1             <-- -->YAB1--------->YAB1         ---------->DOF2---------->ID1          <<<<<<<<<<GATA-1<---------CCA1(2)   cttggcacattcattgttttgagaaggaacagaaaaagttctgatcttgtccctattcgcacatcaatggacgataatagatctactcatagctcaatgt  27230100  Previous    Next  AGI:  At1g72310.1    Description:  ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding. Identical to RING-H2 finger protein ATL1P (ATL1P) [Arabidopsis Thaliana] (GB:Q9XF63); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G53820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79606.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 27229559    to: 27231207    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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