Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            -----------                                                                                      <------ZmHOX2a(1)                                                                                    <---------TOE1(2)                                                                                    --------->LBD16                                                                                   ==================                                                                                   <---------HSFB2a(2)                     --------->HSFB2a(2)                                           <---------LBD16                     <---------HSFB2a(2)                                           --------->HSFB2a(2)     <---------WOX13(1)                                  <------ZmHOX2a(1)    <---------ANAC58   <---------HSFB2a(1)    <------ZmHOX2a(1)             <---------At4g35610   <---------ANAC58 <-----   --------->HSFB2a(1)   <----------ID1               <-----------RAV1(2)  --------->GLK1(2) -------- ---->MYB52(1)     ------>ZmHOX2a(1)         --------->ZAT6       --------->YAB1   <-----------RAV1(2) ----->HVH21     --------->ZAT18 <---------AHL20(2)   <---------LBD16     <---------GLK1(2) ---------   acggaagattgccagagagtcctctagaggacaaaataatcgaagtaacacgattttcaggagacttatcacaagagattccttcccaggagcaacaatc  27224400                                                                      <------ZmHOX2a(2)                                                                     <---------ARR14(2)                                                               <---------ARR14(2) >RAV1(1)                                                      --------->ARR14(2) =RAV --------->GLK1(1)                                        --------->GLK1(2) ----ATHB12                                                   <---------GLK1(2)                    -- ->WOX13(1)                          <-------TEIL    --------->MYB52(1)  ------>ZmHOX2a(1)   -------- >MYB46(3)      ---------->DOF2<---------At4g35610   ---------->DOF2 --------->ARR14(2)    --------->At4g35610   aatggacgaattccaatgcaaaggagagactggagatgatacgttgccagagaaccaaaggagagaatctcgatcctgaagattacaaacagcctctgaa  27224500                                                                                        =============                                                                                        =============                                                                         <---------ANAC58     <------                                                                         <---------ANAC58<<<<<<<<<<<<                                                                       <-----------GT1  <------ZmHOX2a(1)     ---------->DOF2                     ---------->DOF2         <---------TOE2(3)     <----------ID1 --------->GT1                        <------ZmHOX2a(1)        ---------->DOF2      ---------->DOF2 --->HVH21            ---------->DOF2<----------ID1       <------ZmHOX2a(1)  ---------->ARF1---------   actgtaagaaagaagacagaaatggaaagaacgtagagaaggacaaagagaaccatgtgaggactcaaaggttttacttgtctcacaaaaggaccaatgg  27224600     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->ARR11(3)              ---------->DOF2   <---------AGP1          <---------ANAC46   <---------ARR11(3)      <---------ANAC58          --------->ZAT2  <---------CCA1(2)   --------->YAB1                 <---------At4g35610 ==========HOX2a_HOX2a<---------ICU4                 --------->At4g35610 ===========HOX2a_HOX2a    <---------ANAC58         --------->GLK1(2)          ---------->DOF2 ---ATHB12            <------------ATHB5        >>>>>>>>>TBF1        ---------->DOF2           <----- <<<<<LFY            <---------ATHB12        >>>>>>>>>TBF1         <---------YAB1        >>>>>>>>>TBF1 >MYB52(1)         --------->WOX13(1)     >>>>>>>>>TBF1            <---------TOE2(3)  >>>>>>>>>TBF1   atttagatctcatcttctcgtcaatcatggcgagaacaaaagaagaagaagaagaagctgagaaagattaagaaagcttgaaaaagaagaagaagaagga  27224700                                                                                       --------->MYB52(1)                                                                                      ---------->DOF2                                <---------ARR14(2)    <---------ANAC58               *TSS    <-------                           <-----------GT1            <---------ANAC58            <---------WRKY18(1)                         <---------YAB1              --------->HSFC1(2)          --------->WRKY38(1)                      <---------YAB1          <-----------HVH21                  --------->WRKY12   ---------->DOF2    --------->ICU4   <---------GLK1(1)                         --------->WRKY45 -ZmHOX2a(1)   ---------->DOF2  --------->ARR14(2)   <---------HSFC1(2)         --------->DOF5.7(2)   gagggaaaagaagaaacaaaagacatgattatccaatctgggtttctctgtccgaagcttgtaaatggctctcaataccatcgttgaccaaagggaatag  27224800                                                  <---------AHL20(2)                                                  --------->AHL20(1)                                     <---------ZAT18                                          <------                                     --------->ZAT18   <---------AHL20(2)                   <--------                                     <---------ZAT14   --------->AHL20(2)                 <-------GAMYB                                     --------->ZAT14   <---------AHL20(1)                <---------MYB46(3)     ------>MYB46(1)            ---------->DOF2   --------->AHL20(2)                <------------CBF     --------->MYB52(1)      --------->ANAC58     <---------AHL20(1)               --------->ATHB12     ------>MYB83            --------->ANAC58    --------->AHL20(2)      <----------DOF2<---------YAB1   <---------MYB59           --------->ANAC46<---------AHL20(2)        <---------YAB1   <---------TOE2(3)   --------->AtMYB61       <---------ALFIN1 --------->AHL20(2)  --------->YAB1    <---------YAB1 --KAN4(2)             <-----------HVH21 <----------DOF2    <---------AHL20(2)    --------->ICU4   tcagaccaaacagaagaaaacttcttgtcacacccaaagttcacttttaaattttattttattttatcatgttatctttctgccctgattgtggttgtgg  27224900                                                                           <---------ICU4                                                                           -------->ATHB1                                                          <---------AHL20(2)                                                          --------->AHL20(2) <---------YAB1                                                        --------->AHL20(2) --------->YAB1                                                        <---------AHL20(2)--------->AHL20(2)                                                      --------->AHL20(2)  --------->ICU4                                                      <---------AHL20(2)  <---------AHL20(2)                                                    <---------AHL20(2)    <---------ATHB51                                                    --------->AHL20(2) --------->AHL20(2)                                              <---------AHL20(2)<---------AHL20(2)                                              --------->AHL20(2)--------->AHL20(2)                                            <---------AHL20(2)<---------AHL20(2)                                            --------->AHL20(2)--------->AHL20(2)                                          --------->AHL20(2)<---------AHL20(2)  <-----------GT1                                   ----------->GT1<---------AHL20(2)  <---------AHL20(2)                                  --------->DAG2  --------->AHL20(2)  --------->AHL20(2)                                 ---------->DOF2<---------AHL20(2)--------->AHL20(2)<---------DAG2 ---ANAC46                <---------YAB1  <---------AHL20(2)--------->AHL20(2)<---------ICU4   ------ -MYB46(3)    ---------->DOF2 --------->AHL20(2)--------->AHL20(2)<---------AHL20(2)<----------DOF2   gtatgctgtttttatgtaaagtttttttttgattaaaaagttatatatatatatatatatatatatatatatataaattattattcctttttgtaataaa  27225000                                  <---------YAB1                                <---------ICU4                                --------->YAB1                                -------->ATHB1                                <--------HAHB4                                <---------AHL20(2)                                -------->HAHB4                                --------->ATHB51                               <---------ATHB51                               --------->ICU4                               <---------YAB1           ------>ZmHOX2a(1) --------->YAB1     <-------                           <---------MYB52(1)          --------->TOE2(3) <---------ATHB12<---------ICU4                          ----------->GT1  --------->At4g35610       --------->MYB46(3)--------->ANAC55(2) ---->DOF2            <---------AGP1---------->DOF2 <-----------GT1 ------->TEIL     <-----------GT1   agctcaagtacaactctctgaatagctctggtaattattaaagtcagccctatatatccttacttatatgaaccaatgaaaaatgttttacttatttcat  27225100                                                                                                    -                                                                                                    <                                                                                                    <                                     ----------->GT1                                                <                                <---------YAB1                                                     --                           --------->ATHB12                                                        <-                           <---------ICU4                                                          <-                          <---------YAB1                                                        -----                          --------->ICU4                     <---------AHL20(2)                ------                        --------->YAB1                      <---------AHL20(2)        --------->ATHB12                    <---------AHL20(2)  --------->AHL20(2)  --------->AHL20(2)       <---------ATHB12 --AHL20(2)   <-----------HVH21 <---------TOE2(3)     --------->ANAC55(2)--------->MYB59    <--------   ttgtctggttttgttctgtcatttattcatgattaagaaagattaaaaaacgttttatgtgatttattttgaaattgggtcatttcaatctttggaggtg  27225200             --------->ZAT18            <---------ANAC46        <---------ANAC58                                         ----------->GT1        <---------ANAC58                                        <---------MYB46(3)        <---------ANAC46                                        <---------------AtSPL8    <---------ANAC58                                           <---------ANAC46    <---------ANAC58                                         <---------ICU4   <-------TEIL                                              -------->HAHB4  --------->ALFIN1                                           --------->YAB1 -------->At4g35610                                         <---------YAB1 ---------At4g35610                                       --------->YAB1 ------MYB83<---------ANAC58                              -------->HAHB4 ------MYB46(1)                                           <---------ICU4                           -- ------->ALFIN1                                          --------->ICU4        --------->YAB1     <-- --------DEAR3(1)                                      --------->YAB1    <---------ICU4        ------ --------AtMYB61                                     --------->AHL20(2)  --------->YAB1       <------ ---->MYB55(2)      --------->YAB1                --------->AHL20(2)<-------TEIL --------->CCA1(2)--- --->ALFIN1 <---------ANAC58 --------->YAB1    --------->YAB1--------->ATHB12 <---------YAB1  ------- -AtMYB61  <-------TEIL      <---------ICU4   <---------YAB1--------->ICU4 --------->ICU4--------->YAB1   ggaggtgcatgcgtgcgtgctatgatgttgatcatgaaattgaatttgatcataaaataataatgatgggtacaaacattatgatatgaaatcaaaataa  27225300  Previous    Next  AGI:  At1g72300.1    Description:  leucine-rich repeat transmembrane protein kinase, putative. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53890.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45528.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68301.1); similar to putative leucine-rich repeat receptor-like kinase [Oryza sativa (indica cultivar-group)] (GB:AAU12600.1); contains InterPro domain Protein kinase, core; Range:  from: 27221139    to: 27224785    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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