Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------MYB52(1)        <-------GAMYB       <---------MYB46(3)      <------NtERF2     <-----------HVH21     ------>NtERF2    <---------DEAR3(1)    <---------ANAC46    --------->DEAR3(1)  ------>NtERF2                                                   <---------------------WRI1  --------->LBD16                                         --------->CCA1(2) <---------RAP2.6(2)                                     --------->ARR14(2) <---------LBD16                                         <---------ARR14(2)     ---------->DOF2  <--- ---------LBD16--------->GLK1(1)                 --------->ARR11(3)           --------->ANAC58   <--- -------ARR14(2)                                 <---------ARR11(3)           --------->ANAC58------- ------>ARR14(2)                  ----------->HVH21  <---------LBD16       --------->TOE1(2)  -------   tttccggcgtcgttggggtttccatagtccatccccatgactcgctcgagacatcttcggatatagactgagaaaaacccaagaaagaagaaaacactga  27174600                                                                                     ------>NtERF2                                                               <---------ALFIN1    --------->LBD16                             --------->WRKY18(1)              <---------MYB55(2)  --------->ANAC58         <---------YAB1     <-----------HVH21           ----------->RAV1(2)       --------->ANAC46         --------->ICU4    <------MYB83              --------->HSFC1(2)           --------->ANAC58       <---------ICU4      <---------ANAC46          <---------HSFC1(2)       <---------WRKY18(1)       --------->YAB1      <------MYB46(1)          <---------DOF5.7(2)      ----------->HVH21      <------ZmHOX2a(2)   --------->MYB59          <---------ARR14(2)      <---------ANAC58     --------->ARR11(3)   <---------MYB46(3)       --------->ARR14(2)      <---------ANAC58 <------ZmHOX2a(1)        <------MYB46(1)        --------->LBD16           <---------ANAC46  -------- ------bZIP60(2)          <------MYB83          --------->ANAC46      --------->MYB52(2)     <------- ------ANAC46           <--------P              <---------HSFB2a(2) <---------MYB52(1)    ------->TEIL ---->HVH21           --------->ATHB12          --------->HSFB2a(2)<-----------HVH21----------->HVH21 ---->TGA1            <---------MYB46(3)       <---------LBD16--------->MYB46(3) <---------LBD16    <   cgaggacgatcatgagtattgccatggttgggtcaaaccgagagctatctccggaaacgtctgaaccaccgtgagtggcttgacccgcgacgaatttaaa  27174700                                                                 --------->DEAR3(1)       <---------ANAC58                                      --------->MYB46(3)       <---------ANAC58                                 --------->YAB1       <---------ANAC46                                 <---------ICU4 <---------WOX13(1)       <----     <---------MYB46(3)       <------ZmHOX2a(1)        <---------YAB1--------->ATHB12  <------MYB46(1)  --------->DEAR3(1)    ---------->DOF2               <---------ARR11(3)               <---------MYB46(3) ->AHL20(2)     --------->ALFIN1                     --------->YAB1 <---------YAB1<---------TOE2(3) --AHL20(2)    <------ZmHOX2a(1)     <---------REM1(1)--------->ARR11(3)     <---------MYB46(3)<----- ---------At5g28300 --------->At4g35610             --------->ICU4  <---------ATHB12   <------MYB83   tccaccgtggctggagaggagtagcagaaagaggagtagttgtagaatcgagccatgatcatgaccaccgatgattgaacggttgagattggttctacct  27174800                                             --------->ANAC58                                             --------->ANAC58                                             --------->AtLEC2                                             --------->ANAC46                        <---------MYB52(1)<---------WRKY38(1)                       <-----------TGA1   <-------TEIL                ------>MYB46(1)        --------->LBD16         <---------ANAC58                  <---    <-------TEIL------>MYB83         <---------LBD16           <---------ANAC58                  ---- ------DOF2   <---------MYB59     <---------GLK1(1)--------->YAB1                   <----------DOF2 ----DAG2  <------ZmHOX2a(1)<---------MYB52(1)    <---------ATHB12        <-----------GT1        ----   ttggggttcatgaggaccaaactttcgtcagtttggctctccggtccatgcaatgaaaaacaataacttgtctatatttctgttttcttttgaagaaaat  27174900                                                                                   *TSS                                                                                <------MYB46(1)                                                                                <------MYB83                                                                               --------->MYB59                                                                               --------->MYB111(1)                                                                               <---------AtMYB61                                                                               --------->MYB46(2)                                                                              <--------P                                                                              <---------MYB55(1)                                                                            <------MYB83                                                                            <------MYB46(1)                                                                            <---------MYB46(3)                                                                           <---------AtMYB61                                                                           --------->MYB46(2)             --------->ALFIN1                                              --------->MYB111(1)             <---------ANAC46                                              <---------MYB46(3)           <---------ANAC58                                                --------->MYB111(2)           <---------ANAC46                                                --------->MYB55(2)           <---------ANAC58                            <---------MYB46(3) <--------P  --------->AHL20(1)                                   ----------->GT1    <---------MYB55(1)  <---------AHL20(2)                            --------->At4g35610       <---------ANAC46  --------->AHL20(2)                          <--------P                 <-------GAMYB <----------DOF2 ------AHL20(2)                            <---------TOE1(3)            --------->MYB55(2) ----->AHL20(2)     <------ZmHOX2a(1)      <---------TOE2(3)            <---------MYB46(3) ----->AHL20(1)--------->ALFIN1     <---------YAB1    <---------ATHB12 <---------TOE2(3)           --   aaaataaaatatggtgtgtggaggaacattaagagactacgatttgaggttgctcaatggttacaaagagtttgtggttggtaggttgactttgaagttt  27175000                                   <---------TOE2(3)                              <--------HAHB4                              --------->ATHB51                                          --------->CCA1(2)                              <---------ICU4                                    <---------ICU4                   <-----------RAV1(1)                                          --------->ATHB51                   <---------REM1(1)                                            --------->AHL20(2)                  <---------ARR11(3)                             --------->At4g35610  <<<<<<<<<RAP2.2                  --------->ARR11(3)   ------->TEIL         ----------->HVH21   <--------ATHB1              ---------->DOF2--------->ICU4                 --------->ETT(2)    <---------AHL20(2)             <---------AHL20(2)  <---------AHL20(2)        <---------WOX13(1)  --------->ICU4             --------->AHL20(2)  --------->AHL20(2)       <-------GAMYB      --------->YAB1<---------           <-----------TBP   <---------YAB1              <------MYB46(1)    <---------AHL20(2)      --------->ZAT6       --------->YAB1                <------MYB83       --------->AHL20(2) ---------->CBF<---------TOE2(3)<---------YAB1      <---------AHL20(2)     --------->AHL20(2)   gaacaatagcactatttaaagatgttgcatcataattaatgaatatgtttttgtttatttggttgacagcataactaattaataatttagatataacatt  27175100                                                                           <---------MYB52(1)                                                                           <--------P                                                                          <---------MYB52(1)                                                                      --------->MYB52(1)                             <---------YAB1                           -------->P                       <---------WOX13(1)                         --------->ANAC58                      >>>>>>>>>ARR2                             ---------->DOF2                    --                     --------->ATHB12                          <---------ATHB12                 <----                    <---------YAB1                           --------->WOX13(1) <---------ZAT18 -----    --------->AHL20(2)>>>>>>>>>ARR1  <---------MYB52(1)    <---------YAB1 <-----------HVH21    <----- --GT1            --------->CCA1(2) <-----------HVH21 ------->TEIL--------->ANAC58             ------   tttgtataaaatactatatgatatgattgttatgtttccgtcaagaagttgggatgtatttatcaatgaagcaaccggttagtgcaaatatcgccaagat  27175200                                                                                    --------->ZAT6                                                                                   <---------TOE2(3)          <---------MYB46(3)                                                      <---------DOF5.7(2) ------->TOE2(3)                                                                --------->DOF5.7(2) -----GLK1(1)     --------->ATHB51               --------->ANAC58         <-----------GT1 ---->GLK1(1)     --------->YAB1                 --------->ANAC58    --------->TOE2(3)       <------- ----ARR11(3)    <---------AHL20(2)              --------->AtLEC2    <---------DAG2<---------TOE1(3) --->ARR11(3)    <---------YAB1          --------->YAB1     <---------KAN4(1)  <----------DOF2<------   ttcttaatgtgatggttctataattgtttagtttcttcgtaaatcgtaaccatgcaattccaatattccagccttatcacactttaacgctaatgccttt  27175300                                                                  <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 <---------AHL20(1)                                                                 <---------AHL20(2)           -------                                                              <---------ICU4                 <-------                         --------->YAB1                       --------->ATHB51              ------->TEIL        <---------------AGL15                              --------->TOE2(3)            <---------TOE2(3)  --------->ZAT6        <---------ATHB12                   --------->TOE1(3)      <---------ARR11(3) --DAG2 --------------->AGL15 <---------YAB1               --------->YAB1         --------->ARR11(3) ----DOF2             --------->WOX13(1)            --------->AHL20(2)            <---------GLK1(2)   tgtttcactactaaaatttgtaaacaatcaatatgagtgaatcaacttatcgaattaaaaaccataattttttttttttacaaagattttgatgtatcat  27175400                                           <---------AtMYB61--------->ANAC55(2)                                  <---------ANAC58          <---------ANAC55(2)                                  <---------ANAC58          --------->ANAC58                                  --------->ALFIN1       --------->WRKY18(1)                                  <---------ANAC46       <<<<<<<<<<WRKY26      <---------ANAC46                                <---------ANAC58         <<<<<<<<<<WRKY38      <---------AtLEC2                                <---------ANAC58         <<<<<<<<<<WRKY43      <---------ANAC58                              --------->ZAT14          <------MYB83      --------->DAG2                              <---------ZAT14          <------MYB46(1)  ---------->DOF2                 <---------HSFB2a(2)       --------->ALFIN1 --------->ANAC58   <---------ANAC58                 --------->HSFB2a(2)--------->ALFIN1  --------->MYB59--------->AHL20(2)                <---------LBD16 <---------ANAC46  <----------DOF2    <---------AHL20(2)      <------ZmHOX2a(1) --------->MYB46(3)          --------->ALFIN1   <------NtERF2      --------->CCA1(2)      --------->At4g35610 -->YAB1--------->YAB1  >>>>>>>>>>>>>>>>>LFY   <---------MYB46(3) <---------ARR11(3)      <---------At4g35610 --YAB1<---------TOE2(3)<<<<<<<<<<<<<<<<<LFY  <---------RAP2.6(2) --------->ARR11(3)  <-----------HVH21   agaaccactatggtaacctctggaaaaaccagtggggtgtgtgagatggtggctatttggtcaagtaagatttaaaaagttgcatgtctgtcagaggaaa  27175500  Previous    Next  AGI:  At1g72200.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL1N precursor (ATL1N) [Arabidopsis Thaliana] (GB:Q84W40;GB:Q9C7T5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61662.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 27173457    to: 27174983    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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