Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->TOE2(3)                                                     <---------------AGL15              --------->TOE1(3)                                                    <-----------------AGL1            ------->TEIL                        --------->ATHB12         <---------DAG2                   --------------->AtSPL8 ------ZmHOX2a(1) <----------DOF2                <----------DOF2                <----------DOF2------ ------HSFB2a(2)  <---------DAG2     ---------->DOF2<-----------------AG--------->AHL20(2)    <------   taggagagtcaagttttcaactttactcattggtagaagtaaagttatcaactttactaaattggtagaagaaatcaaatagcttttgtaccttaataaa  27173000   <---------AtMYB61   <---------TOE1(3)   --------->DAG2                                     --------->LBD16          ------->TEIL   <---------TOE2(3)                                  <---------At4g35610     <---------AtLEC2 <--------P                                       <------ZmHOX2a(1)          <-------TEIL ---->DOF2           ----------->GT1          --------->ALFIN1              --------->AtLEC2 ---AHL20(2)  --------->ARR14(2)  <------ZmHOX2a(1)   --------->At4g35610<-------TEIL  <----------DOF2   agggtaaggttgcaagtattctctggtgaaattgtaggaatcagggaagtgaggaccgcagaatagaacacgagttacatgcatgtcttctttctcaact  27173100                                   --------->MYB46(3)                                  ------>MYB83                  --------->ZAT14 ------>MYB46(1)                 <---------DAG2--------->MYB46(3)                                              ======                 <----------DOF2------->GAMYB                                            --------->LBD16             --------->MYB46(3)<---------MYB55(2)                                     <--------------           <-----------GT1   --------->MYB52(1)                                  <---------TOE2(2)        --------->TOE1(3)  <---------MYB46(2)                       --------------->AtSPL8     <-----        --------->TOE2(3)  <---------MYB59                         --------------------->WRI1  ======        --------->YAB1<----------DOF2                              <----------DOF2 <---------GLK1(2)   attctctcaatcttaaccactttactttgcctaaccaacatccaattgaaatttgactcagacactcgactttgtacaaaacacaggttcccagagagga  27173200    ------>ZmHOX2a(2)   --------->CCA1(2)   <------ZmHOX2a(2)  <---------AGP1             --------->HSFB2a(2)  --------->AGP1<---------TOE2(2)  --------->ARR14(2)         <---------HSFB2a(2)  --------->ARR11(3)      <---------ARR14(2)     <---------AHL20(2)  <---------ARR11(3)      --------->ARR14(2)  <---------AHL20(2)        --------->ZAT2 =========HOX2a_HOX2a     --------->GLK1(2)   --------->AHL20(2)      --------->ZAT18 ---AGL1        <---------TOE1(2)      <------ZmHOX2a(1)         ---------->DOF2 -ZmHOX2a(1)<-------TEIL <---------GLK1(2)  ------->TEIL <---------LBD16<---------ZAT2           ---- ==========HOX2a_HOX2a--------->YAB1 <---------TOE2(3)  ----------->RAV1(2)                     -----   catagatctacaaattcgtatgtataagaatctggaacaaaggatgaattttttattcacctggagatagagcgagcttggatagagtagaagagcgaag  27173300                                                                               *TSS                                                                           --------->At4g35610                         ------->TEIL                                     --------->ANAC46         --             <---------At4g35610                  <-----------TGA1      --------->At4g35610       <--         --------->ARR14(2) <----------DOF2      --------->YAB1     --------->TOE2(3)       <--------         <---------ARR14(2)<---------ANAC58 --------->TOE2(3)  <------ZmHOX2a(2)     <---------TOE2(3)         --------->GLK1(2) <---------ANAC58<---------ICU4     --------->AGP1 --------->MYB52(1)   <-- ------->HVH21        <---------ANAC55(2)  --------->YAB1    --------->At4g35610   <---------MYB46(3) ---->DEAR3(2)        --------->ANAC55(2)<-----------GT1     <---------At4g35610<---------MYB46(3)---   cgacgcttgagtttctgcttcgtaacgtagcttttgcgattttaaacattatcgtcatcactcagatcaacattagcagcaacggttgatgttttttctt  27173400                                           <---------AHL20(1)                                           --------->ARR11(3)                                           <---------ARR11(3)                                           --------->AHL20(1)                                      ----------->TBP                                   --------->LBD16                                  <---------ANAC55(2)                              <---------ARR14(2)                              ------->TEIL--------->RVE1(1)                              --------->ARR14(2)                           <---------ANAC55(1)                           --------->ANAC55(2)                                                <------                     --------->AHL20(2)   --------->CCA1(1)                                   -------                  <---------ICU4  ----------->GT1                                           ---------           <----------DOF2 --------->ANAC55(1)        <---------AHL20(2)                    --------- ------------->AGL15 ------------>CBF --------->AHL20(2)  <---------AHL20(2)                --------- -------ANAC58   --------->ICU4   <---------ANAC46    <---------YAB1                     <-----------GT1 ---GT1 <------ZmHOX2a(1)  <---------ANAC55(2)      --------->YAB1                <---------ANAC58 -------ANAC58 --------->YAB1<---------CCA1(2)<----------DOF2   --------->LBD16   <---------ANAC46 ------>ANAC55(2)<---------YAB1  <---------LBD16  <-----------TBP                 <---------ANAC58   acttgattcaggacttttcataattcaatacgtatcccgtataaatatctttatttataatttatccccaaaatttcataaatgtcgtattaaaccataa  27173500                           --------->ATHB51                          <---------YAB1                         --------->AHL20(2)                         <---------AHL20(1)                 --------->LBD16                <---------ANAC55(2)                --------->ANAC55(2)                <---------ANAC46                <---------ANAC58                --------->HSFB2a(2)                <---------HSFB2a(2)                <---------LBD16                <---------ANAC58                              --------->CCA1(2)  <---------TOE2(2)      <---------AHL20(2)                  --------->ARR11(3)  <---------TOE1(2)     --------->YAB1                       <---------ARR11(3) ---YAB1       <---------LBD16                               --------->ARR11(1)                 <---- -->ICU4    --------->KAN4(2)                            ---------->DOF2                   ------>MYB46(1) >TOE1(3)  --------->HSFB2a(1)                    ----------->GT1                          ------>MYB83 >YAB1     <---------KAN4(1)                    ---------->DOF2<---------------AtSPL8    <---------MYB59 >TOE2(3)  <---------MYB46(3)       ----------->GT1 --------->AHL20(2)       <----------DOF2  -------   ttcgtatgttcgattgttccgggacattataattgaaactgaaaaatgcagaaagaaaataaagatatgtacagagacactttctcaataaccaaattat  27173600                                                     <---------ALFIN1                                                     ------>NtERF2                                                    --------->DEAR3(1)                                                    --------->ANAC46                                                    ----------->HVH21                                                <-----------GT1                                             <---------HSFB2a(1)                       --------->MYB52(1)                                             --------->HSFB2a(1)             --------->ICU4                                             <---------HSFC1(2)         --------->ANAC58       <---------LBD16                 --------->LBD16                  --------->ANAC58       <-----     ----------->HVH21               ------>ZmHOX2a(2)                  --------->ANAC46--------->SPL7 -------GT1             <------ZmHOX2a(1)    --------->HSFC1(2)       --------------------->WRI1----- -->AHL20(2)            ====================HOX2a_HOX2a           <----------DOF2     <---------SPL7<   acagtatttgacggagtagcatcacaggaacgaaggtgatccgaagaattttccccgacgttgttgttctttccaagaaataatcgatcgaacggcgatc  27173700                                                        --------->ZAT2                                                        <---------O2                                                        ----------->RAV1(2)                                             --------->ANAC46                                   ------->TEIL         <---------ZAT2                                  <---------ALFIN1      --------->O2                                --------->ANAC46       ------>NtERF2                       <---------ZAT14       <---------ALFIN1                             --------->SPL7                       --------->ZAT18       --------->AtMYB61                          <---------MYB52(1)                    <---------ANAC46        --------->MYB46(3)              ------>ZmHOX2a(2)   <----        --------->ANAC58        --------->ANAC58<---------ALFIN1            =========================        --------->ANAC58        --------->ANAC58--------->AtMYB61    --------->ATHB12   <---------SPL7 -ZmHOX2a(2)        <---------ANAC58      <-----------GT1           <---------YAB1 <-----------HVH21 ->ZmHOX2a(2)  <----------DOF2 <---------ZAT18 --------->MYB46(3) --------->ANAC55(2)<---------LBD16 ---------CCA1(2)   <---------ANAC58 <---------DAG2   <---------ALFIN1 <---------WOX13(1) --------->SPL1(2)   gcatagctagaagcaaacttttgggtgaactagcacgcaccttatcaccaccactgccacctggagacatgtgattgatcgaacttgtccggtacggagg  27173800                                                           <---------ICU4                                --------------------->WRI1 --------->AHL20(2)                   -----                          --------->ANAC46                --------->AHL20(2)                <--------                         ------->GAMYB                  --------->YAB1                      <--------                         --------->DEAR3(1)           --------->AHL20(2)                   <---------CCA1(2)                        <------------AtMYB77         --------->AHL20(2)             --------->LBD16                        --------->MYB46(3)        --------->YAB1                   --------->LBD16                        --------->DEAR3(2)       <---------YAB1                   <---------LBD16                      <-----------GT1          --------->YAB1                 <---------At4g35610 --ZmHOX2a(1)         --------->MYB52(1)      <-------TEIL<---------AHL20(2)  --------->At4g35610   - ==HOX2a_HOX2a       ----------->HVH21 <---------SPL7--------->YAB1           --------->ZAT2---------   agttatggagaatggtcttcgatctaaccggccatcttggtcgaaccgttcataataaaaataatttctctcactccctaagctcccggttctatatcct  27173900  Previous    Next  AGI:  At1g72190.1    Description:  oxidoreductase family protein. similar to FDH (FORMATE DEHYDROGENASE), NAD binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G14780.1); similar to unknown [Populus trichocarpa] (GB:ABK96037.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139) Range:  from: 27171025    to: 27173379    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g72200.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL1N precursor (ATL1N) [Arabidopsis Thaliana] (GB:Q84W40;GB:Q9C7T5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61662.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 27173457    to: 27174983    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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