Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ARR14(2)             <---------ARR11(3)             <-----------ARR10      <---------MYB46(3)             --------->ARR11(3)     <------MYB46(1)          <---------ALFIN1          ----------->GT1         --------->LBD16            <------MYB83    --------->ARR14(2)             <---------AtMYB61           <---------HSFB2a(2)    <---------ARR14(2)           <-------GAMYB                 --------->HSFC1(1)    <---------GLK1(1)         <---------ANAC58                 --------->HSFB2a(2) ------>MYB52(1)           <-----------RAV1(1)           <---------ARR11(3) --->ANAC46  <---------ARR14(2) <-----------RAV1(1)   --------->HSFB2a(2)                           - --->ANAC58  <---------ARR11(1) --------->ALFIN1 <---------WOX13(1)                                 < --->ANAC58 <---------CCA1(2) <---------ANAC46 <---------MYB46(3)       <---------ARR11(3)          < --->ANAC55(2) <---------ICU4 <---------ANAC58<---------YAB1   <---------HSFC1(1)            --------   taatggaatcccccaaatcttgacttcttctggtgtgttggtgaattggtgattgtctagagcttctcgaactagatgttttagttcatcgagtgatttc  27158900                                                         <---------ANAC46                                                      --------->GLK1(2)                                                     --------->ARR11(3)                                                     <---------ARR11(3)                                                     <---------ARR14(2)                               <----------DOF2       --------->ARR14(2) -------->HSFB2a(2)       --------->At4g35610      ----------->ARR10 ---------HSFB2a(2)       <---------At4g35610  ------->TEIL      --------->YAB1     <---------At4g35610 ---------LBD16    ---------->DOF2        <---------AtLEC2<---------LBD16           --------->At4g35610 ->GLK1(1)     <------ZmHOX2a(2)      <----------DOF2<---------GLK1(2)  <----------DOF2     <--------   ttctcggaattagatagatcagaaagtttgctgctttcttctttgaatgaaccaagattctgtggaatcatactctttttctcttcagctacttctttct  27159000                                                              <---------MYB46(3)                                                            <-------GAMYB                                                           <---------MYB46(3)                                                           <---------DEAR3(2)                                                          <---------At1g77200                                                          <---------DEAR4(1)          <<<<<<<<<TBF1 <                                                          <---------DEAR3(1)        <----------------                                                        <-----------HVH21        <---------ARR14(2)<-                                                       <-----------RAV1(1)    <------NtERF2        --                                                   <---------MYB52(1)        --------->LBD16     <---             <-----------GT1                      <-----------TGA1           <---------LBD16     <---  --------->HSFC1(2)                              <-----------HVH21       ------>NtERF2         -----  <---------HSFC1(2)                    --------->GLK1(2) <---------DREB2C(2)------>NtERF2      <----  <---------HSFB2a(1)                  <---------ARR14(2) <---------MYB46(3)<---------ANAC46  <------  --------->HSFB2a(1)        --------->LBD16     --------->ANAC46        <-----------RAV1(1)  <------ --DOF2   <----------DOF2    <-----------HVH21   --------->ANAC55(2)     ----------->HVH21    <------   gcgatgcttcgtctttaacctcttgtttctccgtcgatgcagtttctgtttccgtcactgtcggtggatgatgctctgccgcggtttcttcttctggctt  27159100       --------->At4g35610      --------->ARR14(2)  <---------AtMYB61 ---------MYB46(3) -AGL2<---------ARR14(2)                                            <------MYB83 --------AtMYB61                                                   --------->SPL7 ------->ALFIN1                                                   <--------P             <---------GLK1(2) ---MYB83                                                        <-------GAMYB           --------->ARR14(2) ---MYB46(1)          <---------MYB46(3)                         <---------MYB52(1)      <---------ARR14(2) ---->ALFIN1        <---------MYB52(1)                          <---------DEAR3(2)      <---------At4g35610 -----AtMYB61      --------->LBD16                 --------->GLK1(2)<------MYB46(1)  <-------TEIL ---ANAC46       <---------LBD16              --------->LBD16  <---------At1g77200 <---------ARR14(2) ---ANAC58     <---------ARR14(2)      <---------DAG2        <-----------HVH21<---------ANAC46 ---ANAC58     --------->ARR14(2)      <----------DOF2      <-----------RAV1(1)  ----------->ARR10   ggtggtggtatctgcagtttccggtggattagtctcagtcactttctccagagtttctgtctctgtcggtagggcatcttgagtagattcagatacttca  27159200                                                                                  <---------RAP2.6(3)                                                         <-------TEIL             ------>NtERF2                                                      <------MYB83               <---------ANAC58                            <---------LBD16           <------MYB46(1)            <---------ANAC46                        <---------DAG2               <---------TOE1(2)           <---------ANAC58<---    --------->ALFIN1    <----------DOF2              --------->MYB111(1)       <---------ZAT18  <----  <---------ANAC46     <---------ANAC58              --------->MYB59      <---------ANAC58      <----  <---------ANAC58     <---------ANAC58    --------->ALFIN1               <---------ANAC58   <-------  <---------ANAC58  <--------P--------->LBD16       <--------P          <-----------GT1    <---------ANAC46   gaaggcgtgaggctcggagaaggtagcttttccggtgtaacgagagtggtagtagtaggttcttcagccattttttacttgtgccgtcttgttctgtgat  27159300      --------------->AGL15      ------>ZmHOX2a(1)      <---------------AGL15     --------------->AGL15     <-----------------AG                                                               <---------TOE1(2)     --------->TOE2(3)                              --------->DAG2             --------->TGA1a     ----------------->AG                          ======================================bZIP_DOF     <-----------------AGL2                        ---------->DOF2             --------->O2     <-----------------AGL1                    ==========================================bZIP_DOF    ----------------->AGL1                     ---------->DOF2                 <---------O2    <-----------------AGL1                 ---------->DOF2            <-------TEIL<---------DEAR3(1)    ----------------->AG                   ==============================================bZIP_DOF ------MYB46(3)           *TSS         ==================================================bZIP_DOF  -- -----WOX13(1)     ----------->GT1     ---------->DOF2           --------->AHL20(2) <------NtERF2---- -----YAB1        --------->DAG2    <---------HSFB2a(2)   <----------ID1       <---------TGA1a ------ --YAB1          ---------->DOF2    --------->HSFB2a(2)--------->ALFIN1        ======================   tgttgttcctaaattgggcaaaagtgaattttgggtttatagaaagaaagaaagaaagtggagacaaaaaaatacgttgagacgtcgtcgtaagtacaaa  27159400                                                                           <---------------AGL15                                                                           ---------->ID1                                                                           --------------->AGL15                                          --------->AHL20(2)            <-----------GT1                                          <---------AHL20(1)        <---------AHL20(2)                                          <---------AHL20(2)       --------->AHL20(1)    <------------CBF                 <---------AHL20(2)            <---------ARR11(3)  <---------ARR14(2)             <---------AHL20(2)                <---------AHL20(1) --------->GT1            <---------MYB52(1) <---------YAB1        <---------AHL20(2) ----->DAG2       <---------ATHB12   --------->AHL20(2)            --------->AHL20(2) ---->DOF2      --------->WOX13(1)   <---------AHL20(1)         --------->AHL20(2)                --- =====bZIP_DOF------------>CBF  <---------AHL20(2)  ----------->GT1--------->ARR11(3)             <--   agggtatattggtaatgccaatcgaaccggtttttttattttattttatttttgttgtaaaaagattaatatattttctcgttttagcatcaattccaaa  27159500                                                          --------->YAB1                                                     ------>ZmHOX2a(2)                   ----------->HVH21                <------ZmHOX2a(2)                               -         <---------ARR11(3) <----------ID1         <---------ARR14(2)                              <-        <------ZmHOX2a(1) ---------->DOF2          --------->ARR14(2)                       <-------- ------>AHL20(2) <---------ANAC58       --------->YAB1   <---------ATHB12          <----------DOF2 -- -------AHL20(2) <---------ANAC58       ----------->GT1  ----------->HVH21     <-----------GT1   ----   ttatatatcaggatttttggtgtgacaaaaaagacaaaacaatcgtgaaattggatccaatgacatttgaagtatacatttttatctttcaattttgaat  27159600                                    <-------MYC3                                    ------->PIF5                                    ------->MYC3                                    ------->MYC2                                    <-------MYC2                                    <-------PIF5                                   --------->TGA1a                                   <---------O2                                                     <                                   <---------TGA1a                                               ----                                   --------->ANAC46                                              ----                                   --------->O2                                               <------NtERF2                                   ============================================bZIP_DOF      <-------                                 <---------ALFIN1                                           <--------                               --------->CCA1(2)                                            <--------                               <------ZmHOX2a(2)                                            <--------                              --------->ARR11(3)                                            <--------   --------->YAB1             --------->ARR14(2)                                           ----------   --------->AHL20(2)         <---------ARR14(2)                                   <----------DOF2 << -------->YAB1                <---------ARR11(3) <---------YAB1                    --------------->AGL15 --------YAB1 ----------->GT1 --------->AGP1 --------->YAB1  <---------AHL20(2)   <-----------------AGL2 -YAB1      ---------->DOF2  <---------GLK1(1)  <---------TOE1(2)                 <-----------------AGL3 ------->ICU4--------->DAG2  --------->GLK1(1)  <---------TOE2(2)   <----------DOF2<---------------AGL15 ----->YAB1 =================================bZIP_DOF     <---------AHL20(2)   ---------->ID1<-------   aataataaaaaaaaaaaagtaaaaacagaagagatccacgtgaaaaatcatatgtttgatttttttattcctttgttttttgtttctttttttggcgtcc  27159700                             <---------ALFIN1                            ------>MYB46(1)                            ------>MYB83                            -------->P                          --------->AtMYB61                          ------->GAMYB                         --------->MYB46(3)                         <---------MYB52(2)                        --------->ANAC46                        -------->P    <-----------HVH21   ------>MYB83                                                <-------GAMYB ---------ALFIN1        --------->ANAC58                                           <---------MYB46(3) ------->HVH21          ------>MYB46(1)                                            --------->MYB52(2) -->ZmHOX2a(1)          --------->ANAC58                                           <------MYB46(1) --RAP2.6(3)       --------->GLK1(2)                                           --------->MYB55(2) -ANAC58           ------->TEIL  --------->At5g28300                           <---------MYB46(3) -RAP2.6(2)        <---------ARR14(2)   --------->GLK1(2)            --------->AHL20(1) -ANAC46           --------->ARR14(2)--------->ICU4                  <---------AHL20(2) -ANAC58        --------->ANAC46----------->GT1                      --------->AHL20(2) >ID1       <----------DOF2----------->RAV1(1)                       <---------AHL20(1)           --- <<<<<GRF7<---------ZAT14<---------ATHB12                           --------->YAB1 <------MYB83   <-- --SPL7   --------->ZAT14<---------MYB55(2)                  XXXXXXXXXXXXXXXXXXXX>MIR406    ---------   tgacaccttcactgctctacgaatccaaccaacactgtaaaaattctattttgtctcagttaaaattctaatataatccagttgttggttacagtatttt  27159800  Previous    Next  AGI:  At1g72160.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. Identical to Patellin-3 (PATL3) [Arabidopsis Thaliana] (GB:Q56Z59;GB:Q94AG3;GB:Q9C7T9); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G09160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80423.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/t Range:  from: 27157243    to: 27159326    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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