Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                <---------At4g35610                                                              <---      --------->REM1(2)                                                                         -----   <---------ANAC46          ------->TEIL                                    <---------ANAC58  <-----   <---------AtLEC2       --------->ICU4                                     <---------ANAC58  ------   <---------ANAC58   --------->At5g28300                                  <-----------GT1     <-----   <---------ANAC58<---------LBD16                                      <----------DOF2        <----- ------YAB1     --------->At4g35610                                   ---------->ID1           <----- >ATHB12       <-----------RAV1(1)            <---------TOE2(3)   <-----------GT1              <-----   gcattgcatgtagagttttgctgcggtaatgaatcagtgtgtccgactaatgtagtctttcgaataattttcgtcttttacttgtctaagaaatattccg  27130500   ------->TEIL ------------->AtSPL8 ------MYB52(1)                           --------->REM1(2) ---->LBD16                          -------->P ----ANAC55(2)                    --------->MYB46(3) --->ANAC55(2)                    <---------ATHB12 ----ANAC58                      ------>MYB83                                              ------>MYB46(1) ----ANAC55(1)                   ------>MYB46(1)                                           ------>MYB83 ----ANAC46                     --------->WOX13(1)               --------->At4g35610     <---------MYB111(1) ----ANAC58        --------->TOE2(3)--------->WOX13(1)           <---------At4g35610  <-----------GT1   tgatgtactcactaaatcaaaccttgatggaaaccaatcaaccatgtagaatactagaatgtattgcagcaaaatgtttgattcgtttctaccaactatc  27130600                                                                                        <---------MYB46(3)                            --------------->AtSPL8                                     <--------P                         <------NtERF2                  --------->GLK1(1)             <-------GAMYB               --------->ZAT14    <---------MYB59  <---------ANAC55(2)               <---------MYB46(3)               <---------ZAT14  ------->TEIL       --------->ANAC55(2)           <---------MYB52(1)   tagagagtccatagttgtatactgggcctcaatgtaccaaaatcaggcccattatgtgatttcttctaccctcatgtacaaccgtttcggttgctgtgca  27130700                                              ------->PIF4                                              <-------PIF4                                              <-------MYC2                                              <-------MYC3                                              ------->MYC4                                              ------->MYC2       <---------ANAC55(2)                                              ------->MYC3       --------->ANAC55(2)                                              <-------MYC4       <---------TGA1a                                              ------->PIF5       --------->O2                                              <-------PIF5       <---------O2                                             =================================================bZIP_DOF                                             --------->TGA1a     =============================bZIP_DOF                                             --------->O2        <---------ANAC46                                             <---------ANAC55(2) <---------ANAC58                                             <---------TGA1a  --------->ARR14(2)                                             <---------O2     <---------ARR14(2)                                            ------------>OsbHLH66<---------ANAC55(1)                                --------->TOE1(1)             --------->ARR11(1)                                --------->TOE2(1)            <---------GLK1(1)                               --------->HSFB2a(2)     <---------ANAC55(2)                               <---------HSFB2a(2)  <---------ARR14(2)                              <-----------------AGL1--------->ARR14(2)                          <----------DOF2  <---------ALFIN1 ----------->ARR10                          =============================bZIP_DOF <-------TEIL                          <---------DAG2  <------NtERF2<---------ANAC58                          =============================bZIP_DOF--------->CCA1(2)                       <-----------GT1   ------>NtERF2 <---------ANAC58        --------->At4g35610  <                    ----------->GT1     ----------->HVH21--------->ALFIN1 --------->YAB1            -                <---------HSFC1(1)     <---------------------WRI1<---------ANAC58  ---------->DOF2  -                <---------HSFB2a(2)   --------->ANAC46<-------TEIL  <-----------HVH21         <------                --------->HSFB2a(2) <-----------RAV1(2)<---------ANAC46--------->WOX13(1) --------->AHL20(2)   aaaacatcgtcgagcattcgagaagttacttttctcgtacaggcgacacgtgcaaatacgtggagatacgtgtcaattagaagctaaaagaaaaaaatga  27130800                          --------->ANAC58                          --------->ANAC58              <---------TCP20              <---------ARR14(2)              --------->ARR14(2)           <---------TOE1(3)                                 --------->CCA1(2)           <---------TOE2(3)                              <---------TOE1(3)          <---------At5g28300---------->DOF2              <---------TOE2(3)                         - ---------ARR14(2) <---------ALFIN1                       <---------YAB1                         <--- -------->GLK1(2)<---------ALFIN1----------->GT1 --------->ALFIN1                    <------ZmHOX2a(1) -------->ARR14(2) --------->ANAC46    <---------YAB1<---------MYB46(3)   *TSS      ----------->GT1 < ----ID1 <-----------GT1  --------->ANAC46<---------YAB1  ----------->ARR10       <------ZmHOX2a(1) -   caaatctgatgttacggttccacatccctcgcaaagtgtttattatgctaagtgctggttaagatttgatgacatatgaagagaggaggaaacaacaccg  27130900                                                           <------NtERF2               ------->TEIL                              --------->ALFIN1                          --               <---------ARR11(1)                        <---------DEAR3(1)                   -------               --------->ARR14(2)                       <------NtERF2                       ---------               --------->GLK1(2)                        <---------LBD16                    --------->MYB46(3)         --------->ICU4                        <---------ZAT14                             <---------MYB55(2)         ----------->TGA1                      --------->ZAT14                            ------>MYB83    --------->ANAC58                          <----------DOF2    <---------AtMYB61        ------>MYB46(1)    --------->ANAC55(2)                       <---------DAG2<---------AtMYB61           --------->AtMYB61    <---------ANAC55(2)                   <---------ZAT18<---------ANAC46               <---------ALFIN1    --------->ANAC58                 <---------ANAC58   --------->ATERF1(1)            --------->MYB46(3) -------->ANAC58                <---------ANAC58       <---------RAP2.3(1)           <---------WRKY18(1) ------MYB52(1)<---------ARR14(2)    <---------ANAC58 <---------DEAR3(1)            ----------->HVH21 ---------ANAC55(2)             <---------ANAC58      <---------RAP2.3(2)      --------->ANAC58  <--- -------->ANAC58                <---------ANAC46    --------->MYB52(1)         --------->ANAC58 <----   ataagtaagtaatgacgaatcttttggccttgtgtcttgtcttgagcactttactagcggcggaggtatggtctccgagtccagccatgaccacccacaa  27131000           <-----------RAV1(2)         <-----------HVH21        <---------ANAC46        <---------ANAC58        --------->bZIP60(1)        <---------TGA2(1)        <---------ANAC58        <---------bZIP60(1)       <------NtERF2      <---------ATERF1(1)      --------->ABI4(2)      ------>NtERF2     <---------DEAR3(1)     --------->ALFIN1    --------->ATERF1(1)    <---------ABI4(1)    <------NtERF2    <-------GAMYB   <---------DEAR3(2)   <---------ATERF1(1)   <---------DEAR4(2)   <---------MYB46(3)                                         --------->SPL7  --------->ALFIN1                                     <-------GAMYB ----------->HVH21  <---------DEAR3(1)                                  --------->MYB55(2)  <---------DREB2C(2)                                 <---------MYB46(3) <---------ABI4(1)                                   <---------AtMYB61  <---------ANAC46 ------->ANAC46                                   <---------AtMYB61------>ZmHOX2a(2) -->ANAC46<------NtERF2                    <---------ALFIN1<---------ANAC58 >ANAC46--------->TGA2(1)      ---------->DOF2    --------->ALFIN1<------ZmHOX2a(2) ------ALFIN1               --------->TOE2(3) ------->MYC3 <---------ANAC58    >>>>>>>>>MYB2       -- -----REM1(2)               <-----------HVH21 <-------MYC3<---------------AtSPL3          <---------GLK1(2)   cacggcggtggcgtcagagggagaagtcatcgtcaaagacggacaccacgttgtggtggttgagtacgatcgcgacgggaaaaccaataccagagtctcg  27131100                                                                                                    <                                                                                                   <-                                                                                                  ---               <---------At4g35610                                                                <--               --------->At4g35610                                                               ----       --------->AtMYB61                                                                         <---      --------->MYB46(3)                                   <---------------AGL15       ---------->DOF2     ------>NtERF2                                         --------------->AGL15 ---------->DOF2 <---    --------->DEAR3(1)                                <---------HSFC1(2)         ==================== --------->ANAC46                                     --------->HSFC1(2)--------->TOE2(3)   --------- --------->ANAC58             ---------->DOF2         <---------HSFB2a(1)  ========================== --------->ANAC58<------ZmHOX2a(2)                    --------->HSFB2a(1)  ---------->DOF2 --------->ARR11(1) ---->ZmHOX2a(2)--------->ARR11(3)             --------->CCA1(2)       ----------->GT1 ==============   atctcgccaccatcggcagatcaaggagaagaaaaagagaatgaagtagagatgggaacttctatgtttagaaatgttaaagagaaagctaaagaaacgg  27131200                  <------NtERF2              <-----------HVH21             <---------O2             --------->ANAC58             --------->O2             <---------TGA1a         <---------ALFIN1   <---------ARR11(1)   --------->ARR14(2)      <---------HSFC1(2)   <---------ARR14(2)      --------->HSFC1(2)   <---------TOE1(2)       --------->HSFB2a(1)          <---------ANAC58  --------->ZAT2   <-----------ARR10     <---------GLK1(2)              <---------ANAC58  <---------ZAT2   ------->TEIL  <---------DEAR3(2)                     --------->ANAC55(2)  <---------LBD16  <---------CCA1(2)   --------->ANAC58                  <---------ANAC55(2) --------->ALFIN1  <---------ARR14(1)  --------->ANAC58                  <---------ANAC46 ------>NtERF2 ---------ANAC46 ------>NtERF2            <---------bZIP60(1)      --------->ANAC46 -----NtERF2 --------->ANAC58             --------->bZIP60(1)      --------->ANAC58 --->NtERF2  --------->TGA1a              <---------YAB1<------NtERF2   <---------DEAR3(1) ---------HVH21 <---------DEAR3(1)        ----------->HVH21        --------->O2 ----->DEAR3(1)--------->DDF1        --------->LBD16   ------>NtERF2 ----------->HVH21 ------ANAC46--------->ANAC46       <---------DEAR3(1)<---------ANAC58 --------->RAP2.6(3) ------DEAR3(1)--------->RAP2.6(3)<---------ZAT2      <---------ANAC46<---------ATERF1(1) ======================bZIP_DOF   --------->ZAT2      <---------ANAC58--------->MYB52(1)           -- >MYB52(1) <---------ALFIN1<---------HSFB2a(1)   <---------TGA1a   --------->ANAC58             <---- ======================bZIP_DOF  --------->ANAC46<---------O2    <---------ALFIN1               <---- ======================bZIP_DOF <-----------RAV1(2)--------->ALFIN1<---------O2                <-----   cgtcgtatcttccacacgtcggccaaggaatctcccagccggtgatgacagacgaggcgcgtgatcaccacgcgacggctggggaagtcatatgcgatgc  27131300                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                    --------->ALFIN1                                              ---                                  <------MYB46(1)                                                <---                                 <---------AtMYB61                                               ----                                 <---------MYB46(3)                                              <---                                 --------->MYB46(2)                                              <---                                 --------->MYB111(2)                                            -----                                 --------->MYB59                             <---------GLK1(2)  -----                                 --------->MYB111(1)                        <---------At4g35610 -----                                <---------MYB55(1)                          <---------ZAT2      -----                     ------>ZmHOX2a(2)                            <---------DEAR3(1)            <----          <---------ATERF1(2)   <--------P                        <---------At1g77200          ------          --------->ATERF1(2)--------->ALFIN1                  <---------ANAC58                ------        <---------ZAT14      <---------AtMYB61                 <---------ANAC46                ------        <---------ZAT18     --------->ZAT18             <---------MYB52(1)  --------->At4g35610------        --------->ZAT14     <---------ZAT14            <-------GAMYB   ----------->HVH21      <------      ------->PIF5 <---------ARR11(3)              <---------ALFIN1------>NtERF2              -------      <-------PIF5 --------->ARR11(3)             <---------ZAT14--------->ATERF1(1)       ---------- <---------HSFB2a(2)<------ZmHOX2a(2)             --------->ZAT18<---------MYB52(1) <---------bZIP60(1) ------->SPL7      <---------ARR14(2)             <---------SPL7<-----------HVH21   <---------TGA2(1) -----ANAC58       --------->ARR14(2)             <---------ABI4(2)<---------DEAR3(2)<-----------HVH21 -----ANAC58   <---------At4g35610<------MYB83   --------->RAP2.6(2)<------NtERF2   --------->bZIP60(1) --TEIL--------->ALFIN1    --------->ALFIN1---------->DOF2     <---------ANAC58     --------->TGA2(1)   gttcggcaagtgcaggcagaagatcgcgagtgtggtaggtcgggctaaagaccgcaccgttgattccgtcggcgagacagcttctgatgtcagagaagcc  27131400  Previous    Next  AGI:  At1g72090.1    Description:  radical SAM domain-containing protein / TRAM domain-containing protein. similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36390.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ53148.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43690.1); similar to OSJNBa0088K19.13 [Oryza sativa (japonica cultivar-group)] (GB:CAD40910.2); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Protein of unknown function UPF0004 (InterPro:IPR005 Range:  from: 27127229    to: 27130557    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g72100.1    Description:  late embryogenesis abundant domain-containing protein / LEA domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49958.1); contains InterPro domain Late embryogenesis abundant protein (InterPro:IPR004238) Range:  from: 27130874    to: 27132640    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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