Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ERF1            <---------RAP2.3(1)            <---------RRTF1(1)           <---------RRTF1(2)           <---------RAP2.3(2)           <---------DEAR3(1)           <---------DREB2C(2)     <------NtERF2    <---------RAP2.6(3)    --------->LBD16    <------NtERF2   --------->RAP2.6(2)  <---------ANAC46  <---------LBD16 <------NtERF2 ----->NtERF2 ---------MYB46(3) ------->ALFIN1         <---------------AtSPL8 ------ANAC58<---------LBD16 ------ANAC58<------NtERF2 ---MYB46(1)------>NtERF2 ---MYB83--------->MYB52(1) ---->MYB46(2)   <---------ARR14(2) ---->MYB52(2)   --------->ARR14(2) ---->MYB55(2)  <------NtERF2----------->GT1 -----DEAR3(1) <---------MYB46(3) -----MYB46(3)<---------ANAC46 --TEIL ----------->HVH21  --------->MYB52(1) -HSFB2a(1)<---------RAP2.3(3)          --------->GLK1(1) -HSFC1(2) <---------RRTF1(3)--------->ANAC58 >HSFB2a(1)<---------RAP2.6(2)          <---------GLK1(1) >HSFC1(2)--------->RAP2.6(3)--------->ANAC58<---------At4g35610<---------TOE2(3) ->ARR10----------->TGA1<---------------AtSPL3<---------DEAR3(1)<---------TOE1(3)      <---------YAB1   ggtggccggaatgacggcggatagaaatggaacggaaaatggatttcatcggcgatttgattttttagggtttaagagggttttggctcatcaatggtgt  27030000                          <-----------HVH21                     --------->ALFIN1                     <---------ANAC46                                                               -                 <---------ZAT2                                                                 <----                 <---------At4g35610                           <---------MYB46(3)              ------                 --------->At4g35610                        <------------CBF                  >>>>>>>                 --------->ZAT2                            --------->ATHB51          <---------ANAC58             --------->ALFIN1          --------->ANAC58    --------->ATHB12          <---------ANAC58           <---------ANAC46            --------->ANAC58   <---------YAB1           <---------ANAC46 <    --------->ARR11(3)   *TSS         <---------LBD16  <---------YAB1    <----------DOF2     --------   ttcgaagacattgatgtggagctgtgtgtgtcactcgagactcggaagtgaagagtttttattattggttatgggcttttaagttgggcgttttaggccc  27030100                           <----------DOF2                   --------->WRKY38(1)                <---------O2                <---------bZIP60(2)                <---------ANAC58         --------->YAB1                --------->O2             <---------ICU4                <---------ANAC46         -------->HAHB4                <---------TGA1a          --------->ATHB12 -------->ZAT14 ======================bZIP_DOF                                              <-------- -----ALFIN1    <---------bZIP60(1)     --------->ICU4                                      --------- --->ZAT18   ----------->TGA1           <---------YAB1                            ---------->DOF2 >>>>>>>>>>LFY  <---------ANAC58      --------->YAB1                          ---------->DOF2 ---------ZAT14 --------->bZIP60(1)  <---------YAB1                 --------->ANAC46       <------ZmHOX2a(1) ->PCF2      ----------->HVH21     --------->YAB1         ----------->GT1    --------->AHL20(2)  <---   actgtagttttttctgtgacgttgcccatctttttttttataatgatgagcccatctaaaatgttattctacaaaacaataaaagaaagaccaggattcc  27030200                                                               <---------ICU4                                                               --------->YAB1                                                              <---------ATHB51                                                              --------->ICU4                                                            --------->YAB1                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                               <---------ATHB12-------->HAHB4    <---------YAB1                                      --------->YAB1      <---------YAB1       --------->YAB1                                      <---------ICU4      --------->ICU4       <---------ICU4                                     <---------YAB1     <---------ICU4        --------->ICU4     ---------->DOF2                --------->AHL20(2)  <--------HAHB4    --------->AHL20(2) <---------ANAC58                   <---------AHL20(1)  --------->ATHB51  <---------AHL20(2) <---------ANAC58                  --------->YAB1      <---------YAB1    --------->YAB1 -ARR14(2)                        <---------AHL20(2) --------->YAB1      --------->AHL20(2) >ARR14(2)         <----------DOF2<---------YAB1    <---------ATHB12    <---------ATHB12 -------DOF2       ------>ZmHOX2a(1)<---------AHL20(2) --------->ICU4 --------->WOX13(1)            -   tttgcttaaaagaccagggtcctttgctaaaactatattataatgaccaatgaaatcataattaataatgaccaattaaaatgatgacaaaaaaaaaaaa  27030300                   --------->AHL20(2)              <---------AHL20(2)           ----------->GT1       <---------YAB1      <---------AHL20(2)      --------->AHL20(2)--------->YAB1         <-----------RAV1(1)                                <--     --------->AHL20(2)<---------YAB1   --------->YAB1                                           ----     --------->YAB1<---------AHL20(2)--------->TOE2(3)                                           ----    <---------ATHB12   <---------AHL20(2)    <----------DOF2             *TSS          --------->YAB1 ----------->CBF --------->AHL20(2)  <----------DOF2       ---------->DOF2  --------->YAB1--------->YAB1   aacccaattaaaatagtaaatttatattatagtcatcaactttaatactttgttgcaaaataaaaggaaacagtcgcataataatccactaatcacaaac  27030400                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                   <---------ALFIN1                                                                  ----------->HVH21                                                                <------NtERF2                                                                --------->ATERF1(1)                                                                --------->bZIP60(2)                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                               --------->ABI4(1)                                                              --------->DEAR3(1)                                                              --------->RAP2.3(3)                                                              --------->RRTF1(2)                                                              --------->DREB2C(2)                                                              --------->RAP2.3(2)                                                              --------->RRTF1(3)                                                              <---------ALFIN1                                                              --------->RAP2.6(2)                                                              --------->ATERF1(2)                                                              <---------ATERF1(2)                                                             --------->RRTF1(1)                                                             --------->ATERF1(1)                                                            --------->LBD16                                                            <---------ATERF1(1)                                                            --------->ABI4(1)                       <                                                            <---------At4g35610                    <-                                                            ------>NtERF2                       -----                                                           --------->ANAC46                     <----                                                          <---------LBD16 <---------ANAC46      <----                                                      --------->GLK1(2)--------->O2            ------                                                     <---------GLK1(2) --------->TGA1a         <-----                                                     <---------ARR14(2)<---------TGA1a         <-----                                                     --------->ARR14(2)--------->ANAC46       -------                                                <-----------HVH21<-----------HVH21            -------                                              --------->DAG2--------->At4g35610               <------                                            ---------->DOF2--------->DEAR3(1)                 <------                       --------->YAB1       =====================================bZIP_DOF     -------            <---------LBD16             <---------------AGL15--------->RAP2.3(1)              <------            --------->HSFB2a(2)         --------------->AGL15--------->ERF1                   <------            <---------HSFB2a(2)        <-----------------AGL1--------->RAP2.6(1)           ==========     <----------DOF2  <---------ATHB12 ----------------->AGL2--------->DEAR4(2)            ------>ZmHOX2a(1) --------DOF2<---------LBD16         <-----------GT1<---------At4g35610----------->HVH21   ========== ----->TOE1(3)      --------->WOX13(1) ----------------->AGL1--------->ORA47(2)        <---------ARR14(2) ----->TOE2(3)   ------>NtERF2   --------->WOX13(1)----------->ARR10 --------->ANAC46  --------->ARR14(2)   ctttaccctttcttctcggggccaatcaaaaacttcaattaaccagaaaaggtcagattctccgccgcctcacacgacgggcaacttcagttcctgccgt  27030500            --------->ATERF1(2)            <---------ATERF1(2)            --------->RAP2.3(3)            --------->RAP2.3(2)            --------->RRTF1(2)            --------->RAP2.6(2)           --------->RRTF1(1)           <------NtERF2           --------->RAP2.3(1)           --------->ERF1       ------>ZmHOX2a(2)     --------->ARR14(2)     <---------ARR14(2)     --------->ARR11(3)                                <---------ARR11(1) -----------HVH21     --------->WRKY18(1)              <-----------ARR10 --------ANAC46      <-----------HVH21                 --------->GLK1(2) ---->ATERF1(1) --------->WOX13(1)                     --------->ARR14(2) --NtERF2--------->ANAC46                              <---------ARR14(2) -----MYB52(1)<------NtERF2  ------>NtERF2             ------->TEIL >NtERF2<---------LBD16      <---------SPL7           <---------ARR14(1) ----RAP2.6(3)<---------MYB52(1)                   ------>NtERF2 ------HVH21--------->RRTF1(3)                     --------->LBD16 -->ATERF1(2)------>NtERF2  ----------->HVH21      <------NtERF2                                 <--- -->bZIP60(1)<---------RAP2.6(3)  --------->At5g28300 <---------CCA1(2)                          <--- ---O2<------ZmHOX2a(2)     --------->ETT(2)      --------->RAP2.6(2)                        -------- ---ANAC58--------->LBD16   <---------ETT(2)      --------->DEAR3(1)                         -------- -->DEAR3(1)--------->DEAR3(1)   ----------->GT1  --------->RAP2.3(2)                        <------- ---ATERF1(2)<-----------HVH21--------->MYB52(1)--------->LBD16                      <-----------GT1 ---ANAC58------>NtERF2     <---------ANAC58    <---------At4g35610       ------>NtERF2    --------->MYB46(3) ============HOX2a_HOX2a    <---------RAP2.6(2) ------>NtERF2 <-----------GT1   <---------YAB1   ---- =============HOX2a_HOX2a   <---------ANAC58   --------->ANAC46       ----------->HVH21<---------YAB1   cgcgttagatcccgccgtcaatcggtcatggcgaccggtaaaacctcttccgccgcgaatcttttcactggctcgacgcgttttgatttatcatccgctg  27030600                                                                              <------ZmHOX2a(2)                                                                              =================HOX2a_HOX2a                                                                              --------->CCA1(2)                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR14(2)                                                                             --------->AGP1                                         --------->AtMYB61            --------->LBD16       ===============================HOX2a_HOX2a                    <---------LBD16    ------>ZmHOX2a(1)       ------>ZmHOX2a(1)                 <---------ALFIN1            --------->LBD16  ----------->RAV1(2)    ------>NtERF2                       <---------MYB55(2)  <------NtERF2    --------->ARR11(3)   --------->DEAR3(1)                   --------->MYB46(3)  ---------->ID1 --------->HSFB2a(1) ------GLK1(2)                    --------->At4g35610 <---------ARR11(3)   <---------HSFB2a(1)   ---- ------ARR14(2)                   <---------At4g35610 --------->ARR11(3) ---------->DOF2============= ->LBD16                          --------->ZAT2     --------->ZAT2 <---------LBD16 --------->ARR14(2) ->At4g35610                   <------ZmHOX2a(2)    ------>MYB83    <---------ANAC46<---------ARR14(2) --At4g35610                  <-----------HVH21     ------>MYB46(1)<---------LBD16  --------->ARR11(3) ----->ARR14(2)           ------>ZmHOX2a(1)     ------>NtERF2   <----------DOF2     <---------ARR11(3)   attcgcctccttcaaaactctctctctcctccgatcagctcaaccactgccaccaagctctcggcgttttccggggaaagatccaaaatcctgactcgat  27030700                                                              ====================================HOX2a_HOX2a                                                   --------->KAN4(2)                                                  <----------TaMYB80                                                  <---------KAN4(1)                                                  --------->KAN4(1)                                                  --------->HSFB2a(1)                                                  <---------HSFB2a(1)                                     ------>ZmHOX2a(1)        ------>ZmHOX2a(1)                               <-------TEIL      <---------ARR14(2)                              =================================HOX2a_HOX2a                              <------ZmHOX2a(2)  ---------->TaMYB80        ------>ZmHOX2a(1)         <-----------GT1      ==============HOX2a_HOX2a ------>ZmHOX2a(1)  =======================HOX2a_HOX2a        <---------ZAT14      <---------ARR11(3)  <---------KAN4(2)        --------->TOE1(3)   <------ -->ZmHOX2a(2)               --------->ARR11(3)  --------->ARR14(2)       --------->TOE2(3) --------- ===HOX2a_HOX2a              --------->AGP1   <---------TOE2(3)  <---------ZAT6            <------ZmHOX2a(2)   cgctcatgagtttaccggtttacaggttatagatccatcctctaaattgagaatattcctcttcctagtgtttcttccttaaaaacaaattggatcataa  27030800                                                    --------->ZAT6                                              <---------At4g35610                                        --------->At4g35610                                        <---------At4g35610                           --------->ALFIN1--------->At4g35610                           <---------bZIP60(2)--------->At4g35610                         <------ZmHOX2a(1) <---------At4g35610                --------->ANAC58        --------->ZAT2  --------->ZAT14                         <----                --------->ANAC58        <---------ZAT2  <---------ZAT14                        ------ ---YAB1    --------->ANAC58           --------->ARR14(2)                                     ------- >YAB1      --------->ANAC58           <---------ARR14(2)                                     <------   tacactctcttcgaacgcaggctaataggatgtggccatcggagctgctgctaaacagtacagtggctatgaacagtgtcaatgttgagaaaaacagata  27030900  Previous    Next  AGI:  At1g71850.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64799.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) Range:  from: 27028394    to: 27030025    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71860.1    Description:  PTP1 (PROTEIN TYROSINE PHOSPHATASE 1). similar to protein tyrosine phosphatase [Fagus sylvatica] (GB:CAJ77612.1); contains InterPro domain Protein-tyrosine phosphatase, receptor/non-receptor type; (InterPro:IPR000242); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387); contains InterPro domain Protein-tyrosine phosphatase, active site; (InterPro:IPR016130) Range:  from: 27030373    to: 27032754    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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