Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ANAC58                  --------->AHL20(2)                                      --------->ANAC58          --------->ANAC46 --------->MYB52(1)                                      --------->ANAC46 --------->AHL20(2)   <-----------GT1                                     <---------TOE1(2) --------->YAB1   <---------AHL20(2)          ------>ZmHOX2a(2)        <---------SPL7     <---------ATHB12--------->TOE2(3)      ----------->HVH21    <----------DOF2        ------>ZmHOX2a(2)   <----------DOF2   gcctgtctctgatcggagcatagttgagactttccatcgcacgactcgctgatccaataaaaaaacacaaaactttaattacaaaacagcaaaacaaaac  26996700                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                          <---------ICU4                                                             --------->YAB1   --------->AHL20(1)                                                             <---------ANAC46--------->AHL20(2)                                                          ------>ZmHOX2a(1)  --------->YAB1      <---                              --------->ANAC58     --------->AHL20(1)     --------->YAB1        >>>>>               <----------ID1 --------->ANAC58     <---------AHL20(1)    <---------YAB1         >>>>>            ---------->DOF2 ---------->DOF2        <---------AHL20(2)    --------->ICU4        ------       ----------->GT1  --------->TOE2(3)        <---------YAB1        --------->YAB1         <------    --------->MYB52(1) <----------ID1           --------->AHL20(2)  --------->TOE2(3)     ------>ZmHOX2a(1)   aaaacaaaacagcaaaaagaacaaaaccacaaaagcaaacacatgaacaatattatattcctgtcgtaatccataataataatattaaattcctgtatga  26996800       --------->ICU4      <---------AHL20(1)                                                 --------->ANAC46      <---------AHL20(2)                       <---------ARR14(2)        <----------ID1     --------->YAB1                     --------->TGA2(2)                --------->ANAC58    <---------YAB1                     <---------SPL7                    --------->ANAC58   --------- ------WOX13(1)                       <---------ANAC46                <------ZmHOX2a(2)     <-------- >>>>ARR1                             --------->ANAC55(2)            --------->ARR11(3)     --------- >>>>ARR2   <---------At5g28300       <---------ANAC55(2)           --------->At4g35610>>>>>>>>>ARR1 --->ATHB12<-----------GT1            --------->bZIP60(1)           <---------At4g35610>>>>>>>>>ARR2 ---YAB1<---------ICU4   <--------P  <---------TOE2(3)          <-----------HVH21    <---------YAB1   ttgtttataatatttaccatcttcagggttagcgaaattgacgtaagcgtaaccaagagaacgatgagtcagatcacgacaaaccctaagattgtgaact  26996900                                                           ----------->RAV1(1)                                                           ------>NtERF2                                                          ----------->HVH21                                                 ------>ZmHOX2a(2)                                  -                                                <------ZmHOX2a(2)                                   <                  <------ZmHOX2a(2)            <---------AGP1                                      --                  --------->CCA1(2)            --------->ARR14(2)                                  --                 --------->ARR11(3)            <-----------ARR10                                   <-                 <---------ARR11(3)            <---------ARR14(2)                                  --                 --------->AGP1         --------->ZAT6    <---------ETT(1)                         <- >ZAT14         --------->GLK1(1)   <---------WOX13(1)    --------->ANAC46                       ---- -ZAT14         <---------GLK1(1) --------->ATHB12   <---------ARR11(3)                          <--- >ZAT18    ---------->DOF2   ----------->HVH21<---------CCA1(2)      --------->CCA1(2)    ---------->DOF2   ggagcaacttgattaaagagatccaagagatgtgactcattgacactcggatctaaatctccgacatagagagacgagtttggatgggtttgcaaagcct  26997000                          <------NtERF2                          ------>NtERF2                         --------->DEAR3(1)                         --------->RAP2.6(2)                         --------->RAP2.3(3)                         --------->RAP2.3(2)                         --------->ANAC58                         --------->RRTF1(2)                      --------->ANAC46           --------->At4g35610           --------->ZAT2--------->ANAC46           <---------At4g35610          ----------->RAV1(1)          ================================RAV        <---------At4g35610            --------->ANAC46        --------->At4g35610<---------ALFIN1        --------->ZAT2===========================MYC_MYB       ----------->RAV1(1)--------->LBD16     <---------At4g35610 --------->RRTF1(3)     <------NtERF2   ============================MYC_MYB     --------->ZAT2  <---------MYB55(2)===================bZIP_DOF       ------->GAMYB     <---------ZAT2  <------------AtMYB77                            --------->MYB46(3)     --------->At4g35610--------->RAP2.3(1) <------NtERF2           --------->At4g35610    ----------->RAV1(1) --------->RRTF1(1)  --------->ANAC58       --------->RAP2.6(2)    XXXXXXXXXXXXXXXXXXXX>MIR834        =========================================MYC_MYB   <-----------RAV1(2)------->GAMYB    ==========================================MYC_MYB   ======================RAV ====================MYC_MYB         --------->At4g35610   ===================RAV--------->ANAC58   --------->ANAC58     <---------At4g35610   ================RAV--------->DEAR3(1)  <-----------RAV1(2)    --------->ZAT2  --------->At4g35610--------->DEAR3(2)--------->TGA1a          ----------->RAV1(1)  <------NtERF2  <---------At4g35610   <---------TGA1a        --------->ZAT2   <--------P <---------ATERF1(1) --------->MYB46(3)==============================================MYC_MYB ------>NtERF2   --------->At4g35610   ==========================================MYC_MYB ----------->RAV1(1) --------->ATERF1(1)  ===============================RAV <---------MYB46(3) -------->ANAC46--------->RAP2.6(2)    =========================================MYC_MYB ---------DEAR3(1)  -------->P----------->RAV1(2)             <---------At4g35610 ------->At4g35610  =============================MYC_MYB     ----------->RAV1(1) ------->LBD16--------->ZAT2 -------->P--------->ANAC58    --------->At4g35610<-------GAMYB --------LBD16<---------At4g35610      --------->ANAC58  <------ZmHOX2a(1) <---------MYB52(1) ---->NtERF2  --------->At4g35610      --------->O2 --------->ALFIN1<---------At4g35610      <------- --------At4g35610--------->MYB46(3)  <---------LBD16 <------ZmHOX2a(1) <------------AtMYB77 -------- ------>CDC5 =============================RAV  ---------->DOF2--------->At4g35610         <------ZmHOX2a(2) ------LBD16 ----------->RAV1(1)     --------->MYB52(1)--------->ALFIN1-------->P--------->ATHB12   ccgcggcagcagcagcagcagcaaccgccgcaacctgactcacggcagggaaaggaggaggagcagcagcagcaaccgtgggttgattagggatcacttg  26997100                                          --------->RAP2.3(3)                                          --------->DEAR3(1)                                          --------->RRTF1(3)                                         --------->RAP2.3(1)                                         --------->ERF1                                         --------->ATERF1(1)                                         <------NtERF2                                        --------->ABI4(1)                                        <---------ATERF1(1)                                        <---------At4g35610                                        --------->At4g35610                                        --------->LBD16                                        <------NtERF2                                        ------>NtERF2                                       --------->DEAR3(1)                                       --------->RRTF1(2)                          <---------HSFB2a(2)                 <------NtERF2        --------->RRTF1(1)                <---------DEAR3(2)    --------->RAP2.3(1)               <---------DEAR3(1)   --------->DEAR3(1)              --------->ATERF1(1)   --------->ANAC46              <------NtERF2         ------->GAMYB             <-----------HVH21     <------------AtMYB77           <------NtERF2  --------->HSFB2a(2)          <---------RAP2.6(3)      <---------MYB55(2)          <---------ATERF1(1)      --------->MYB46(3)                                               <          <-----------HVH21 <---------At4g35610                                                     -  --------->MYB46(3)  --------->GLK1(1)--------->RAP2.3(2)                                    <------  <---------ATHB12 ------------>CBF--------->ATERF1(1)         <---------TOE1(2)             <------- -------->P--------->ATERF1(1)     --------->DEAR3(2)     --------->GLK1(1)               <---------GLK1(1) --ANAC55(2) <---------SPL7 --------->At4g35610          --------->ARR11(3)               --------->GLK1(1) ->ANAC55(2)<---------DEAR3(1) <-------TEIL------>NtERF2 <---------ARR11(3)    ----------->HVH21<----   atcaaccatggccgtcgtcggggcaattccagatgcaaccgccgcagccatagcgataagatttctaggtttttctagggtgagacagagagatttctgt  26997200                                              ---------->ID1                                              <-----------GT1                                   <-----------TBP                                   --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------AHL20(2) ---------TOE2(3)                  <---------AHL20(2) --------->ID1                   <---------YAB1                              --------->YAB1         - ---------AGL15                --------->AHL20(2)                     ----------->GT1             --- ----------AGL2                <---------AHL20(2)<----------DOF2      --------->LBD16             --- -----MYB52(1)            --------->GLK1(2)  <-----------GT1        <---------LBD16  <------ZmHOX2a(1)   ttgtggttttccaaaatttttaggggagaatatttatttttatattttttcctttttttttttgggttactccggtgaataagaagaggagtagagagac  26997300                                                                                    <----------DOF2                                                             --------->ARR14(2)    <---------ANAC46                                                       <---------SPL7         <---------O2                                               -------->P<---------LBD16      <---------ANAC46                                               ------>MYB83  <---------ARR14(2)    <---------ANAC58                                               =========================================MYC_MYB                                               --------->MYB52(1)             --------->O2                                               ------>MYB46(1)                <---------bZIP60(2)                                              --------->MYB55(1)              =================bZIP_DOF                                              --------->MYB52(1)              =================bZIP_DOF                                             --------->AtMYB61                <---------TGA1a                                             ------->GAMYB--------->ANAC46    <---------ANAC58                                             ===========================================MYC_MYB          ---------->DOF2     <---------AHL20(2)   <-----------HVH21          <---------ANAC58      --------->ALFIN1      <-----------TBP  --------->MYB46(3)               --------->TGA1a --------->DOF2         <------MYB46(1)     <---------MYB55(2)             ----------->HVH21 ------>ANAC58          <------MYB83        --------->MYB46(3)         --------->ATHB12 ------>ANAC58        <--------P            <---------MYB52(2)<------ZmHOX2a(2)    <---------ANAC58   tcgaaagggtgtgaaagaatgagagttggtatttatacattcgctaaccaaccggtccctacggatcagagtttgatttgacgtggcttttgagttttga  26997400                                  <---------PCF2                                 ----------->TCP11(1)                             <-----------RAV1(1)                                                   --                        ------>ZmHOX2a(2)                                                         ---                       <------ZmHOX2a(2)                                                      <------                      <---------ARR14(2)                                                    -------->HAHB4                =========================RAV                                                ---------                ----------->RAV1(2)                                                        <---------YAB1       <---------AHL20(2)<----------DOF2                                    <-------MYC3  <---------TOE2(3)   <----------DOF2    --------->ARR14(2)               ------>ZmHOX2a(1)    ------->MYC3 --------->YAB1   <---------DAG2     --------->ARR11(3)    <---------DAG2     --------->YAB1           <---------AHL20(2) <---------At4g35610  <---------ARR11(3)    <----------DOF2   <---------ATHB12         <---------AHL20(2)   ctcagctttttaattcacatctgggatctttttgtgggccaatgggctttttctgtcctggccaataatccaatgccacatgttttttttttaatgataa  26997500               --------->YAB1              <---------YAB1                                    --------->AHL20(2)            --------->YAB1                                    <---------YAB1           <---------YAB1                                   <--------HAHB4           <---------AHL20(2)                               -------->ATHB1        --------->AHL20(1)                                  --------->YAB1        <---------AHL20(2)                                 <---------YAB1   --------->AHL20(2)                        --------->AtLEC2--------->TOE2(3)   <---------AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------AHL20(1)                        ------>MYB46(1)<---------ICU4   --------->AHL20(1)                      ------->GAMYB   --------->ICU4  --------->YAB1            <---------AHL20(2)             <---------ATHB12  --------->AHL20(2)  <---------AHL20(2)  --------->MYB46(3)--------->ATHB12 ------->WOX13(1)     --------->AHL20(2)<-----------GT1  --------->YAB1  ---------->DOF2 ------>AHL20(2)<---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->AHL20(2)          x ---YAB1--------->AHL20(2)  --------->AHL20(2)          --------->MYB46(3)                      <---- >YAB1  <---------AHL20(1)--------->AHL20(2) ------>MYB83--------->WOX13(1)                 <--------   tcaattatattatattataaaaatttaaatttatatgatatataaccatccaaatacaacaatcattaaaacaaataaagaaaactgaacacaattttga  26997600  Previous    Next  AGI:  At1g71770.1    Description:  PAB5 (POLY(A)-BINDING PROTEIN); RNA binding. Identical to Polyadenylate-binding protein 5 (PAB5) [Arabidopsis Thaliana] (GB:Q05196;GB:Q9M9G9); similar to PAB3 (POLY(A) BINDING PROTEIN 3), RNA binding [Arabidopsis thaliana] (TAIR:AT1G22760.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75447.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67527.1); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contain Range:  from: 26994170    to: 26997109    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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