Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------AHL20(2)                                   --------->AHL20(1)                                  --------->AHL20(2)                                  <---------ICU4                                  <---------AHL20(2)                                  --------->ATHB51                                 <---------YAB1                               --------->YAB1                               <---------ICU4                              --------->ICU4     <---------YAB1           <---------ATHB51  ------->TEIL                <---------AHL20(2)                                                   <- <---------CCA1(2)    <---------TOE2(3)   <---------MYB46(3)                                      --- ---->ARR14(2)       ---------->DOF2   <-----------RAV1(1)                                     ------ -----ARR11(3) <---------MYB52(1)--------->ICU4        --------->TOE2(3)           --------->TOE2(3)< ----CCA1(2) ------>ZmHOX2a(2)--------->AHL20(2)      <----------ID1 <-----------------AGL1 <--------   tctgaatcttattgatcgttttttaaagataaataattattttgttgttgatgaaaaccacaaacttcgagtccctattaggctcccttaatataaacca  26987000           <---------ARR11(1)           ------->TEIL           <-----------ARR10                                              ----------->RAV1(1)           --------->GLK1(2)                                           <---------ATERF1(1)    --------->HSFB2a(1)                                                ------>NtERF2    <---------HSFB2a(1)                                                --------->ORA47(1)  <---------MYB52(1)                                                  <---------ETT(1) --------->ANAC46 --------->LBD16                                                      --------->DEAR3(1) --------LBD16                                            <---------AHL20(2)          <---------TOE2(3) ------>MYB52(1)                                          ---------->DOF2 <---------ALFIN1       ---- --->AtMYB61                                             --------->AHL20(2)    --------->AHL20(2)<--- ---------HSFB2a(2)               ---------->DOF2       --------------------->WRI1   <-----------GT1 ---GT1   <---------ARR14(1)    --------->YAB1<---------ANAC46   --------->ARR14(2)<---------AHL20(2)   taccggaagttcgaatctaaaccaagaatgtttatcaaaagtctagagacgtttatgcattaaatcgaatcgccgaccacattatttaaacgttactact  26987100                                                        <---------AHL20(2)                                              <---------ZAT18                                              --------->ZAT18                   <---------AHL20(2)                                             --------->TCP16(2)                <---------AHL20(1)                                            <---------ARR14(2)                 --------->AHL20(1)                                            --------->ARR14(2)                 --------->AHL20(2)                                            <---------TCP11(2)   --------->ANAC55(2)                                            <---------PCF5       --------->ANAC46                                       <-----------GT1 <---------YAB1  ------->GAMYB                                    --------->YAB1   --------->YAB1    --------->TOE2(3)      -------                                 --------->AHL20(2)  <--------HAHB4   --------->MYB46(3)      <------      <---------YAB1        <-------TEIL    <---------TCP16(1)   <---------ANAC55(2) <------MYB46(1)    --------->YAB1       <---------DEAR3(2) <---------TCP20      --------->ANAC55(1) <------MYB83   <---------YAB1    ----------->HVH21 --------->MYB52(1)   ----------->HVH21  <---------AHL20(2) <-- ----->ZAT14    <---------AHL20(2)--------->AHL20(2)<---------YAB1    <----------ID1--------->MYB59 ------ZAT14    <---------ICU4   <---------AHL20(2) ----------------------->TaNAC69(2)  <-------TEIL-   atactatcatgagtttaataaatgcgacggtccatttaaaataacgggtccactattattatttgacacataaccacaaaatttattaggtccattatca  26987200                      ------------>CBF                    <---------ETT(2)               --------->At4g35610               <---------At4g35610              --------->MYB52(2)            <---------MYB52(1)            --------->DOF5.7(2) ----->CBF --------->TOE1(3)                                    <-----------HVH21 ---YAB1   --------->TOE2(3)                       --------->ALFIN1             <---------ICU4 ---------RAV1(1)   <---------ANAC46  <---------AHL20(2)     <------------CBF--------->YAB1 -------->ALFIN1    <---------bZIP60(1)         <------ZmHOX2a(1) <-----------GT1             <------   atgttgggcctatcgttagctgtcgtcaatagctggttcttaaattttgaggagtatgggtttcattgtcacatttcaaacatcatgcccaaattgatag  26987300                                                                                              <------ZmHOX2a(1)                                                                                             <-------                                                                                      <------NtERF2                                                                                     <---------MYB46(3)                                                                                     --------->LBD16                                                                                    <---------ANAC46                                                                                   ------>NtERF2                                                                                   <------NtERF2        --------->AHL20(2)                                                         <---------LBD16       <---------AHL20(2)                                                         <---------ATERF1(1) <---------ANAC58                                                                --------->ANAC46 ----------->GT1                                                                 <---------DEAR3(1) <---------ANAC58  --------->YAB1                                               <---------LBD16 <---------ANAC46 --------->ICU4             ----------->GT1                   --------->ANAC46   --- <---------ANAC55(2) <---------YAB1      --------->GLK1(2)              <-----------GT1<---------ARR14(2) ---WOX13(1)  ------------>CBF      ---------->DOF2---------->DOF2     <---------AHL20(2)    --------   atttcgtaaataatatggcaattttgataaaactagagaaaagaatatggataaaaagaaccgtttgaagaaatttatcttacgcggcggataagaggaa  26987400                                                                                          --------->ALFIN1                                                                    <---------MYB52(1)  <---------ANAC46                                                                   <-------GAMYB        <---------bZIP60(2)                                                                  <---------MYB46(3) ----------->HVH21                                                                 <------NtERF2     --------->LBD16                                                               <---------DEAR3(1)<---------LBD16    <-------TEIL                                              <------NtERF2   --------->At4g35610 ---ID1                                                     <---------DEAR3(1)<---------At4g35610 ------->DOF2             --------->AtLEC2                 <------NtERF2      <---------ZAT2 --->GT1          <-----------HVH21     ------>ZmHOX2a(1)<---------DEAR3(1)   --------->ZAT2   aaaagatgcaaacgcttctctgtcagccatgtaagtctcttcctatactcactgcttcgtcgtcgtcgtcgttgattcgtagctccggtgatgtgcgaga  26987500                                                                      <---------ANAC58                                                             <----------DOF2                            <---------HSFB2a(2)        --------->ANAC58                            --------->HSFB2a(2)        --------->ANAC58                   <------NtERF2                  --------->ZAT6      <---------ANAC58       <-------                 <---------DEAR3(1)             <-----------GT1    <----------DOF2           --------                 <---------ANAC46            --------->ANAC55(2)  <---------DAG2     <-----------RAV1(1) ------->TEIL  <-----------HVH21 --------->HSFC1(2)--------->TOE1(3)  <---------ANAC46  <---------ANAC46   atgtatcgattttagagcgtcggagaaagtctcgaagtttcaatttcatgtaaccctaagcccctttgcctttcgtggtttctcaatatgtcgcgaattt  26987600                                                                              <------ZmHOX2a(1)                                                                            --------->ALFIN1                                                  --------->ALFIN1         --------->ATERF1(1)                                                 <---------MYB52(1)        <------NtERF2                                              <-----------------AG        --------->LBD16                                              <---------LBD16            <---------ANAC46                                              =======================================================                                              <-----------------AGL1     <---------ANAC58         <---------At4g35610                  ----------------->AGL1     <---------DEAR3(1)   <---------ANAC58                       <---------HSFC1(2)             <---------ANAC58   <---------ANAC46    --------->ARR11(3) --------->HSFC1(2)            <---------LBD16   <---------ANAC58    <---------GLK1(2)--------->ARR11(3)              <------NtERF2               - --ARR14(2)          ----------->ARR10  <---------ARR11(3)       <---------ARR14(2)      <---------At4g35610 ->ARR14(2)<----------DOF2  <---------At4g35610 --------->LBD16 <------ZmHOX2a(1)<------ZmHOX2a(1)  -   gctgttcgtggagcttatgggattagattttgctcacgagaagatgtttccggtgttggaaatggaggaatcgtggcggaggaggagattgagctattga  26987700               <---------------AGL15               --------------->AGL15               <---------MYB59              ----------------->AGL3              ----------------->AGL1              ----------------->AGL2                                   <---------MYB52(1)              ----------------->AG                             --------->HSFB2a(2)          <----------DOF2                                     <---------LBD16          ------>ZmHOX2a(1)                                 --------->ARR14(2)         --------->TOE2(3)                                  --------->GLK1(2)      <---------ARR11(1)                               --------->ANAC55(2)      --------->GLK1(2)                             ----------->TGA1<------NtERF2      <---------ARR14(2)                    <---------At4g35610<---------HSFB2a(2)              >>>>>      --------->ARR14(2)                  --------->DAG2    <---------ARR14(2)             --------->LBD16 ==============================MADS_MADS ---------->DOF2   <---------GLK1(2)       <----------DOF2 -------->ANAC58                <------ZmHOX2a(1)   ----------->HVH21 <---------RAP2.6(3)<---------LBD16 -------->ANAC58     --------->YAB1   ----------->GT1  <---------ANAC55(2)      --------->GLK1(2)   acaagccgaatcctttaccaaaatcagaaaatgaggagagtggtaaagcagacgatgacgcgattctggagccgtttttgaaattctttaaaccggaaga  26987800                                                                                               <-----                                                                                             <-------                                                                                        <------MYB83                                                                                        <------MYB46(1)                                                                                       <---------MYB46(3)                                                                                       --------->MYB46(2)                                                                                       --------->MYB111(1)                                                                                       --------->MYB111(2)                                                                                       --------->MYB55(2)                                                                                       <---------DEAR3(1)                                                              --------->ARR11(3)       <---------AtMYB61                                      <---------ARR14(2)  --------->YAB1              <---------MYB55(1)                                   <---------ANAC46      <---------YAB1               <--------P                                ----------->HVH21    ----------->GT1   ==============================                          <---------ANAC46       <---------ZAT14       ======================RAV                         <---------LBD16         --------->ZAT14 --------->TOE2(3)   <-------GAMYB<--                       <---------ARR14(2)       <---------ANAC46------>ZmHOX2a(2)   --------->MYB55(2)                      <---------HSFC1(2)       <------NtERF2<---------YAB1          <---------MYB46(3)      --------->ANAC58--------->HSFC1(2)       --------->At4g35610     <-----------RAV1(2)<----------      --------->ANAC58--------->HSFB2a(1)      <---------At4g35610------>ZmHOX2a(1)<---------TOE2(3) >>>>TBF1             <---------HSFB2a(1)    <---------WRKY12 <---------ARR11(3) <-----------RAV1(1)   agaaggggaaggaattgaatcggaagtttcggatgagacggatagagtcagcgtagagtattatgatcctaaaccaggtgattttgtggttggtgttgtg  26987900  Previous    Next  AGI:  At1g71720.1    Description:  S1 RNA-binding domain-containing protein. similar to RPS1 (ribosomal protein S1), RNA binding [Arabidopsis thaliana] (TAIR:AT5G30510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67521.1); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 26987406    to: 26989652    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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