Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------ARR11(3)                                                     --------->ARR11(3)                                                   <---------HSFB2a(1)                                                   <---------HSFC1(2)                 <---------LBD16                                                   --------->HSFC1(2)               --------->GLK1(2)                                                   --------->HSFB2a(1)          --------->TOE2(3)           ---------->DOF2            <-----------RAV1(1)                 <---------DAG2--------->LBD16      --------->CCA1(2)        <---------MYB46(3)---------->DOF2          <----------DOF2   <--------   tccaagagatttgaaaagactctcactcagcattggttcaatgtgggtttggaaagttcttggaacaagactgcgactttttccataatctgggaataaa  26939100                                          <---------ARR14(2)                                          --------->ARR14(2)                                         <----------TaMYB80                                    --------->ANAC58                                --------->ZAT2                                    --------->ANAC58                          --------->ARR14(2)                                    --------->ANAC46                          <---------ARR14(2)        <---------DEAR3(1)         <---------LBD16                        <------NtERF2        <---------ANAC46          <-----------GT1                       --------->ANAC46        <---------RAP2.6(2)      <---------ARR14(2)                     --------->ANAC58   ----------       --------->RAP2.6(3)       --------->ARR14(2)                     --------->ANAC58  --------->ANAC46       --------->DDF1           <----------TaMYB80                     ------->GAMYB--------->At4g35610      <-----------HVH21        <---------KAN4(2)                    <---------ALFIN1<---------ZAT2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->TaMYB80     --------->AtLEC2     <---------At4g35610 -KAN4(2) <------NtERF2        ---------->TaMYB80      --------->MYB46(3)------>NtERF2  <---------ALFIN1   cttgacaatgtcggctatggtgagacctccaagaatatacggcatatactctgtctaacaacaccatgcccaacgcgccatattcgagctccacaacaaa  26939200                                                                                       --------->ATHB12                                                                                      --------->ICU4                                                                                      <---------YAB1                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                   --------->ALFIN1                                                                                  --------->ZAT18                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                                              --------->ALFIN1                                                                             <-------PIF5                                                                             <-------MYC2                                                                             <-------MYC3                                                                             <-------MYC4                                                                             ------->MYC4                                                                             ------->MYC2                                                                             ------->MYC3                                                                             ------->PIF5                                                                            <---------ANAC55(2)                                                                            <---------O2                                                                            --------->ANAC55(2)                                                                            --------->TGA1a                                 --------->ZAT6                             --------->O2 <---------WOX13(1)  <---------YAB1     ---------->DOF2                            <---------CCA1(2)<---------ANAC58 ->RAV1(1)         <------ZmHOX2a(2)                  --------->ATHB12      <---------TGA1a--------->At4g35610   aaatatgcttctctacttgagatcaaagcagaataagactacaagttgagaaaacttcattgaagcatatcatcgaacacgtggtgtgctgattgctgaa  26939300                                    --------->ARR14(2)         <---------TOE2(3)                           <---------At4g35610              <---------WOX13(1)                           --------->At4g35610   <---------ARR14(2)                           --------->ZAT2        --------->ARR14(2) --------->MYB52(1)      ---------                        ---------->DOF2 <-------TEIL      --------->ATHB12                 <---------ARR11(3)                  ------->TEIL      <---------ARR14(2)   <---------YAB1  --------->MYB52(1)--------->ARR11(3)   ccatactatatacacatttgaaccctaagagctgagagtatatacatagcagaacctatatgattgagaataacgaaacagaggtaagagagagatattg  26939400                                      ----------->RAV1(1)                                           <                                   --------->ANAC46                                                 <                                   --------->ANAC58                                              ----                                   --------->ANAC58                                            <-----                               ---------->DOF2                                                <------                           --------->ANAC58                                                   <------                           --------->ANAC58                                                   <------                          --------->LBD16                                                <---------ARR14(2)      --------->ANAC58  <---------LBD16                                            --------->ANAC46--      --------->ANAC58 <---------ANAC58                                            --------->AtLEC2<-    ---------->DOF2    <---------ANAC58                               --------->ZAT14    --------->ARR14(2) >CCA1(2)---------->DOF2--------->ZAT18              --------->GLK1(2)<---------ZAT14  *TSS   <------   gaacaacaaagcaaagcggaagaatgcgcgcgaaaaaacgcaacaagagtacgagactctgaagatgaagagtgaagacaactccatgccaaatttgctt  26939500     --------->ANAC55(2)  <---------MYB52(1)  <---------ARR14(2) <-------GAMYB ---------DEAR3(2) ---------MYB46(3) -------->AtMYB77 -----DOF2                           <------------CBF ---AtLEC2                        ----------->RAV1(1) ---ANAC58                        <---------ALFIN1            <------------CBF         --------->ARR11(3) ---ANAC58                  ---------->DOF2                <<<<<<<<<<<<<<<<<LFY        <---------ARR11(3) ------->ETT(1)  ------->TEIL  --------->PCF2              ----------------->AGL1     --------->CCA1(1) --------DREB2C(2)         ------>ZmHOX2a(1) --------->MYB52(1)                       --------->RVE1(1) ---ANAC46 <---------AHL20(2) <-----------TCP11(1)      --------->ANAC46         --------->YAB1   ---   gtcggttactgaatttatgagcctttctcctaaggcccacattggcccaactgtttacaaggcccattggggctagtttccaaacaaaatatctgaagaa  26939600       <--------P      --------->REM1(2)                                   <<<<<<<<<TBF1                        <-----     --------->ALFIN1                              <---------YAB1                              <-----   <---------ANAC55(1)                        --------->YAB1 <<<<<<<<<TBF1               <---------ANAC46   <---------ANAC58                  --------->ALFIN1  <<<<<<<<<TBF1                     <---------ANAC58   <---------ANAC46               --------->DAG2 <---------ICU4                          <---------ANAC58   <---------ANAC58              ---------->DOF2<---------YAB1              --------->ZAT14 --------- ------>ALFIN1              ----------->TBP *TSS--------->ICU4     <---------MYB52(1)<----------DOF2<   gtgaggcgtgttggctaaatagaggcccatataaaaaaagtgtggctaccattattcttcttcttcttcgttatccacttctctctcctttgtgtggtca  26939700                                                          xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     --------->DEAR3(1)       <-----------GT1                                                    --------->ANAC46     --------->LBD16                                                  <---------ALFIN1      --------->ANAC58                                                  --------->AtMYB61     --------->ANAC58          ---                                                 <---------ABI4(2)      --------->ANAC46         ----   <---------GLK1(1)                             --------->MYB46(3)    <---------LBD16          -----  ------->TEIL                                 ------>NtERF2   <---------At4g35610             ------ ----WRKY38(1)                                <---------ETT(2) <---------CCA1(2)    ------>ZmHOX2a(1) ----WRKY12                             <<<<<<<<<WRKY18 ------->TEIL   --------->LBD16         ------ -->GT1 --------->ANAC46              <-----------HVH21 --------->ARR14(2)   --------->ICU4   ------- -------TEIL            <----------DOF2 <---------WRKY12<---------ARR11(1) <---------ICU4    <-------   aatgcatttccctccattctcttacgctttctctcactctcgtcaatggcgaccaccgcatcttcatctctcccccgtaattactccttcacaactccgc  26939800                                                               <-----------HVH21                                                              ------->GAMYB                                                             <------------AtMYB77                                                             --------->MYB46(3)                                                             --------->DEAR3(2)                                                           <---------ARR14(2)      <---------ICU4                                       --------->MYB52(1)     <---------YAB1                                        --------->ARR14(2)   --------->REM1(1)      <---------MYB52(1)              ----------->HVH21   --------->YAB1    --------->DREB2C(2)                 --------->At5g28300 --->NtERF2          --------->ANAC58                 --------->LBD16 -->NtERF2           --------->RAP2.6(2)              ------>NtERF2 ------>HVH21        --------->ANAC58                --------->DEAR3(1) --->LBD16        <------ZmHOX2a(1)     ------>NtERF2--------->ANAC46               --------->ATHB12 >NtERF2       --------->LBD16       --------->At4g35610--------->RAP2.6(2)      --------->MYB52(1) -->ANAC46    <---------TOE2(1)      <---------At4g35610--------->RAP2.3(2)      -------->P --LBD16      <---------TOE1(1)   <<<<<<<ZML2       <---------LBD16    --------->At4g35610      -----   gaccttcatcattcatccgaggaccgccattagctagaacgctgcctctctatctccgccgtaaccgtcgagtagctctcacttaccgattggaccagaa  26939900                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                                   <---------DEAR3(1)                                       ---------                                   --------->DEAR3(1)                                       <--------                                   ----------->HVH21                                      --------->LBD16                              <---------ANAC58                                           --------->ATERF1(2)                     --------->ANAC58 <---------ANAC46                                   <---------DEAR3(1)                     --------->ANAC58--------->ATERF1(1)                                 <---------DREB2C(2)                     <---------ANAC55(2)                                                 <---------ANAC46                     --------->ANAC55(2)                                <---------HSFB2a(2) <--------                     ----------->GT1 <------NtERF2                      --------->HSFB2a(2)<---------MYB52(1)                  <---------ARR14(2)------>NtERF2                      <---------LBD16  --------->ATERF1(1)            --------->ALFIN1--------->CCA1(2)<---------ARR11(3)       ----------->RAV1(2)<---------ATERF1(2)            <---------AtMYB61 <---------ANAC58         <<<<<<<<<TBF1--------->ANAC46    <------NtERF2        <---------ZAT14   <---------At4g35610<---------ARR14(2)------->TEIL           <---------DEAR3(1)        --------->ZAT14   --------->At4g35610--------->ARR14(2)<---------ARR14(2)     --------->ALFIN1   --------->At4g35610--------->TOE2(2)      --------->ARR11(3)--------->ARR14(2)   <---------ANAC58-   <---------At4g35610--------->TOE1(2)  <---------TOE2(2)    <---------CCA1(2)    <---------MYB46(3) ---->ARR14(2) <---------ANAC46  <---------ATERF1(1)<<<<<<<<<TBF1   <---------ALFIN1<---------ANAC58<   ttcgaagcagagaagtggtggaaacgtaagatgcgaggcgacggaggtatcttcttcttcttctgtatccacacctggaaggaattgggtgccggtggtg  26940000  Previous    Next  AGI:  At1g71490.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G22830.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G22830.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN80898.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16279.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26936567    to: 26939487    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71500.1    Description:  Rieske (2Fe-2S) domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO16307.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) Range:  from: 26939644    to: 26941269    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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