Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------LBD16                                          --------->ARR11(3)                                         <------MYB46(1)                                         <------MYB83                                      <---------MYB52(1)                                   <---------LBD16                                  ------>NtERF2                                 --------->ANAC58                                 <---------DEAR3(1)      <-------GAMYB              --------->ANAC58<---------ARR14(2)     --------->MYB55(2)         --------->SPL7   --------->ARR14(2)     <---------MYB46(3)<---------ANAC46 <---------AtMYB61   --------->ANAC58    <---------AtMYB61 <---------LBD16 <------NtERF2         --------->ANAC58           --------->MYB46(3)    --------->ALFIN1----------->HVH21--------->LBD16        --------->ANAC46          -------->P   <- <---------DEAR3(1) <---------REM1(2)------>NtERF2        --------->CCA1(2)        <---------MYB52(2) ---------ORA47(1) <-----------HVH21<---------LBD16   --------->LBD16            --------->ZAT6    -- -----ZmHOX2a(1)   <-----------TGA1<------NtERF2 <---------GLK1(2)    >>>>>>>>>>>>>>>>>LFY        <--   aggacggtggttgagactcgtcgtcacggagagggacgccgggaggtctcggattccgagagacgacactacttccattgtgaccactaaccacttgatt  26934000          <---------MYB52(1)         <-------GAMYB        <---------MYB46(3)              <---------YAB1  --------->MYB52(1)        <----------DOF2 ---------->DOF2  ---------->DOF2        ------->TEIL  --------->AHL20(2)       ---------->DOF2 --------At4g35610--------->AHL20(2)   <---------AHL20(2)   <------------CBF             ----------->GT1 ------->At4g35610<---------AHL20(2)   <-----------TBP<------------CBF                 <------------CBF -------TOE2(3) <-----------TBP <-----------GT1    ------------>CBF               ----------->GT1   aagctaaaggtcgttagtatttatatgtagctttaaactatttttataaagtatgcaattgaaattgaaagctaatatttgggccagaaaattgaaatat  26934100               ------------>CBF                <---------ANAC58                             <--------          <------NtERF2                        <---------ANAC46                     <----------DOF2         <------NtERF2                      <---------ARR14(2)                     <---------ANAC58         --------->ANAC58                   --------->ARR14(2)               --------->ATHB12         --------->ANAC58         <---------ZAT18                            <---------AHL20(2)   <--        --------->RAP2.3(3)     --------->At4g35610                         --------->AHL20(2)   <---      <---------PCF5<---------REM1(1)  <---------ALFIN1                     --------->AHL20(1)  -----      --------->PCF2--------->YAB1<---------ZAT14                           <---------AHL20(1)  <----      <---------ZAT18       <-----------HVH21  <---------ANAC58    ------->TEIL    <---------ANAC58  ---------->CDC5 <------------CBF--------->ZAT14         ---------->DOF2   <---------AHL20(2) <-----   gggcttagggcccccaaaacaattgtagcccatcagttcacacacggtttcgtttttaaaaaaagcatgtatttagaatttattggcttttattttggtg  26934200 <---------ANAC46 <---------ANAC58                                                                                 --- <---------ANAC58                                                                                ---- -AtMYB61                                                                                   --------- ------P                                                                           <---------ARR11(3) ----GAMYB                                                                         <---------AHL20(1) ---->MYB55(2)                               ----------->GT1                       --------->ARR11(3) -----MYB46(3)                               --------->ANAC58                      --------->AHL20(1) ----AtMYB61 ------>ZmHOX2a(1)               --------->ANAC58              --------->ZAT6----------->GT1   gttgcttcaatcttcctcgtttaaaaacaattcatgtcaacttggacaagttacaaaaaaaacgtttcatatttttgtcactaaaaatattcagttaaat  26934300                                  --------->AHL20(2)                                  ----------->TBP                              ----------->GT1      <-----------GT1     <---------ARR14(2)    <---------WOX13(1)    --------->ARR14(2)   <------------CBF   ------>NtERF2                                                    --------->GLK1(2) ------>DAG2         --------->LBD16  --------->AHL20(2)                              <---------GLK1(2) ------>DOF2        --------->HSFB2a(2)        <---------YAB1                     ---------->ID1 >AHL20(2)          <---------HSFB2a(2)   --------->YAB1              *TSS<----------DOF2           <   aaagtaattgactcttcgttttcccgacgatactgtataaataaacatcatgtttctacttgttcacatatcgactctttgtttgtccgattctatctct  26934400                                                            <------ZmHOX2a(2)                                                      <---------ARR14(2)                                                      --------->ARR14(2)            --------->YAB1                                                     <-------GAMYB            --------->TOE2(3)                                                  <------NtERF2               --------->TOE1(3)                                                 ------------>AtMYB77        ----------->RAV1(2)<----                                     --------->MYB52(1)  <---------YAB1 --------->TOE2(3)       -----         <---------DAG2           --------->TOE2(3) <---------DEAR3(2)  --------->AtMYB61       <----         <----------DOF2          --------->YAB1 ------>NtERF2         --------->ANAC46      >>>>>>>> ----------DOF2                   --------->TOE1(3)<---------ANAC46  <---------ALFIN1    --------->LBD16   ctctttagaaactttatctagtctcttcgaacttaatcttaacgacgatggtgccggttacgatcaactctccacctaaacctgaatcatccgaagaaga  26934500                                                                                            ---------                                                                                            ---------                                                                                         <-------TEIL  <---------At4g35610                                                                   --------->AtLEC2 -----ARR11(3)                                                                       <-------TEIL ---->ARR11(3)                                                 --------->GLK1(2) <---------------AtSPL8 -------ARR10            --------->At4g35610           --------->MYB46(3)        --------------->AtSPL3 >TBF1     <---------TOE1(2)         ------>NtERF2    ------->TEIL       <<<<<<<<<<<<<<<<<LFY   actcagcgactcccaagtttccaactcatcggaagacgacgactcaatggaagacgaaccatcagactctgaaaacaacaatggaggtacatgcatgcat  26934600                         --------->ANAC46                                             <---------ANAC58                       <-----------GT1                                                <---------AtLEC2                     <-----------GT1                                      <---------TOE2(3)                 <---------GLK1(2)                                   --------->MYB52(2)                 --------->ARR11(3) <-----------GT1                  <---------MYB46(3)    <-------TEIL        <---------AHL20(2)        <-----------HVH21              <---------ANAC58 <----------DOF2  <- >ANAC58--------->AHL20(2)  <-----------GT1         ---------->DOF2<---------MYB52(1) <---------ANAC58 >ANAC58<---------AHL20(1) --------->ZAT14  >>>>>>>>>>>>>>>>>LFY <---------ANAC58 XXXXXXXXXXXXXXXXXXX   cactctctattttatttcagatttttcacttcaccatttcacatgtttccactgtaaagaagttggagcgtttgttaagaaatactttgcatgttcatgt  26934700                                                                                      <----------DOF2                                                                                    <---------ICU4                                                                                   <-----------GT1                                                                                 --------->YAB1                                                                              --------->TOE2(3)                                                                           --------->ARR14(2)                                           --------->TOE2(3)               <---------ARR11(1)                                           --------->TOE1(3)               ------->TEIL             -                                         <---------ARR11(3)                <---------ARR14(2)       -                      <---------YAB1     --------->GLK1(2)                <---------CCA1(2)         <                     <---------ARR11(3)  --------->ARR11(3)--------->ARR11(3) <----------DOF2      --    <---------WRKY18(1)<---------ICU4   --------->RVE1(1)<---------YAB1 <---------ANAC58           -- --------YAB1        <---------GLK1(2)<---------AHL20(2) <---------TOE2(3)<---------ARR14(1)     ---- X>MIR783   ----------->GT1 <---------ANAC46   ---------->DOF2          <---------ANAC58 --------->TOE2(3)   tctgtttgactgtgaggtttcaagattattacgttgatataaaaatcttaaaagtgattaagatagtttttgtatcgtatctttaatactttcttaaaaa  26934800 -------->ARR11(3) -------->GLK1(2)             <---------TOE2(3)                                 --------->ARR11(3) ---------ARR11(3)      <---------GLK1(2)                                       <---------ARR11(3) ------->CCA1(1)     --------->HSFB2a(2)     <---------TOE2(3)           <----------DOF2 ------->RVE1(1)     <---------HSFB2a(2)    ---------->DOF2       <---------ARR14(2) ----->AHL20(2) <---------MYB46(3) --------->MYB52(1)             --------->ARR14(2)           <-----   aaaatcttatgtcaatagttgttacagaaactgaggctaatggtattaaagatgagttttgggctcggtatccatctttgaagatgtttttaagtaagga  26934900  Previous    Next  AGI:  At1g71460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16277.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65544.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26931646    to: 26933978    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71470.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22090.1) Range:  from: 26934370    to: 26935230    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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