Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ANAC58                 --------->ANAC46                 --------->ANAC58                 --------->ANAC55(2)                --------->SPL7                <-------TEIL                ------->TEIL              --------->TOE1(2)              <---------SPL7              --------->TOE2(2)     <---------MYB59                           <---------ZAT14   <---------ARR11(3)                          --------->ZAT14 ------->At4g35610       ------>ZmHOX2a(1)     <---------ZAT18 --------GT1 <---------ANAC58         <---------ANAC58 ---GLK1(1)  <---------ANAC58    <---------ARR14(2) -->GLK1(1) <---------TOE2(3)    --------->ARR14(2)  ----------->GT1  ---------->DOF2               < --ARR14(2) --------------->AtSPL3    <---------ANAC58          ---------->DOF2                 ----- ->ARR14(2)--------->MYB52(1)    <---------GLK1(2)  ------------------------>ANAC81      ---------->DOF2   caccagaccttactaacgtacgcaatccttcaacaaattcgcgtttcagtgcagaaggtaaaacagaagagccaaagcgcctcaatgtcccaaaagagat  26923700                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                   ------>MYB46(1)         <---------               <---------ICU4                                      ------>MYB83           <---------DAG2               --------->YAB1                                     --------->MYB52(1)   --------->ANAC58              <---------ATHB12                                <-----------GT1          --------->ANAC58              <---------YAB1    <---------ICU4               *TSS------->GAMYB      <---------GLK1(2)       --------------------->WRI1                          --------->ANAC55(2)      <---------ARR14(2)   --------->CCA1(2)     --------->ANAC58                  <---------ANAC55(2)----------->HVH21 ---------TOE2(3)        --------->ANAC58                --------->AHL20(2) <---------At4g35610  <--- ---->CCA1(2) --------->ICU4   <-------TEIL      <----------ID1 --------->MYB46(3)  --------->ARR14(2)   ttgagataagcttgtaatcatcgacgctcgaaattcattaccttgtttatgaagacaaattaagtaaccaactgtttcgtctgacagaaacgccttttgt  26923800                                                     ------>ZmHOX2a(1)                                                    --------->TOE1(3)      ----------->GT1                           <------------CBF         --------->TOE2(3)     --------->DAG2        -----                        <----------DOF2          <-----------GT1         ---------->DOF2      <------                 <---------ANAC46         ------>ZmHOX2a(1)        ----------->GT1     --------->DAG2 -DOF2   --------->YAB1 <---------DAG2<---------ARR14(2)      ----------->GT1         ---------->DOF2 --------GT1 <------------CBF         --------->ARR14(2)   --------->CCA1(2)       ----------->GT1   aactaaactaatcggaattgtgtctactttattgtccctaaatcctctgtttttccttaagagatggtaagataaaaaagttaagaggtaaagtaaaccg  26923900                                                        <------MYB83                                                        <------MYB46(1)                                                      <--------P                                                     --------->REM1(2)                                                ------>MYB83                                                -------->P--------->At5g28300                                                ------>MYB46(1)                                                --------->MYB52(1)                      <------ZmHOX2a(2)        --------->MYB52(1)                      ===========================HOX2a_HOX2a                     <---------ARR11(3)        --------->MYB55(1)                     --------->ARR11(3)       --------->AtMYB61                     --------->AGP1           --------->MYB46(3)                     <---------ARR14(2)      <---------MYB52(2)                     <---------AGP1          --------->MYB46(3)                     --------->ARR14(2)    <---------ARR14(2)                         <---------MYB46(3)        <---------WOX13(1)                <------ZmHOX2a(1)         <---------At4g35610   ---------->DOF2       <---------ANAC58  --------->At4g35610 --------->DEAR3(2)     --------->At4g35610--------->At5g28300       <---------ANAC58==========================HOX2a_HOX2a --------->WOX13(1)<-----------GT1       <---------ANAC46------>ZmHOX2a(2)<---------TOE2(3)----------->GT1  <---------DEAR3(2)   ------ ---->LBD16        ----------->ARR10<-------GAMYB  --------->LBD16  --------->ZAT2    ----------->GT1 ---LBD16      <---------YAB1   --------->GLK1(2) ------->GAMYB  ---------->DOF2   --------->MYB52(1)   ggtattgctgcttgatcaagatagatcttctgcgattcggttgaggaaccaaccgggtagggtaaatcaaagctgtcggtttaacaagcggttaaagagc  26924000                                                --------->AHL20(1)                                                <---------AHL20(1)                                                <---------ARR11(3)                                              --------->AHL20(1)                                              <---------AHL20(2)        --------->ATHB51                                   --------->ANAC55(2)                  <---------ICU4                                   --------->ANAC46                   --------------->AGL15                                  <-------TEIL<---------AHL20(1)     <-----------------AG                                --------->ARR14(2)              --------->AHL20(1)                                <---------ARR14(2)              <---------AHL20(1)                             --------------->AGL15              <---------AHL20(2)      <------------CBF                            ==========================================================MADS_MADS<-----                            ----------------->AGL1 <-----------GT1   --------->YAB1   --------->AHL20(2)                 <---------------AtSPL8 ----------->GT1   --------->ANAC55(2)         <---------AHL20(2)     <---------YAB1         ----------------->AG--------->ARR11(3)  <-------TEIL     <---------YAB1   <-----------GT1   ------------>CBF<---------MYB52(1)   <---------ANAC55(2)      --------->YAB1   < --->At4g35610   --------------->AtSPL8 <---------ANAC55(2)     --------->AHL20(2)--------->ICU4    -   ggaagttactattttgtagttagtacaatttccatatacgttatgtaaaatattttcgatacttaataaattcataatttgggaattataaattgaatgt  26924100                                         ----------->HVH21                                         --------->At1g77200                                         --------->DEAR3(1)                                         ------->GAMYB                                         --------->DEAR4(1)                                         --------->DREB2C(2)                         --------->DEAR3(1)                        <------NtERF2   --------->MYB46(3)                        --------->ATERF1(1) --------->ANAC58             --------->DAG2           <---------ALFIN1         --------->TOE2(3)<---------ATERF1(1)  *TSS   --------->TOE1(3)------>NtERF2 --------->DEAR3(2) --------->HSFB2a(2) ------HVH21---------->DOF2    ---------->DOF2       <----------DOF2 ---------ARR14(2)      --------->RAP2.3(1) --------->ANAC46   --------->WRKY18(1)          <-------- -------->ARR14(2)     <---------RAP2.3(1)  --------->ANAC58  <--------ZAP1    ---------->ID1   cagaaccgaaaccctaaagcgatagcggcgacttcaagctccaccgacgcaaactctttttctaggtcaagctcatagttcgtcttcttctccataattc  26924200                                                     --------->LBD16                                                     ------>ZmHOX2a(1)                                                   ----------->RAV1(2)                                                   <---------LBD16                                                 ------>ZmHOX2a(2)                                                <---------GLK1(1)                                                --------->GLK1(1)                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                                               --------->ARR14(3)                                               <---------ARR14(3)                                               --------->ARR11(3)                                               <---------ARR11(3)                   --------->ARR11(3)        ----------->ARR10 <---------At4g35610   ------>ZmHOX2a(1)           ---------->DOF2                 ---------->DOF2     --------->At4g35610   <---------At4g35610 -ICU4 <-----------GT1         ---------->DOF2 <---------ARR14(2)      --------->GLK1(2)            <   tcactgatttcaccaaagaaaaatcatggaagggaaagaaaactgcaaagatctcctgaaattggagctcaagaatccatcttcttcctctgctatggat  26924300               <---------LBD16                          ------>ZmHOX2a(1)           <---------------AtSPL3                    ------>ZmHOX2a(1)           <---------------AtSPL8                 <---------ATERF1(1)             <---------ARR14(2)          <---------ANAC46       >>>>>>>>>TBF1   --------->ARR14(2)               --------->ARR14(2)          <------------------SPL14  >>>>>>>>>TBF1<---------ARR14(2)    --------->ATHB12   --------->ANAC58    <----------DOF2        --------->YAB1       --------->ATERF1(1)   <---------ATHB12    --------->ANAC58 <---------ALFIN1       --------->YAB1         <---------ATERF1(1)    --------->MYB46(3)---------->DOF2 ---------At4g35610   XXXXXXXXXXXXXXXXXXXX>MIR854A-E<---------ALFIN1--------->MYB52(1)------>ZmHOX2a(1)   tcagcacttttgatgtgtacggataagaataagaagaagaagaagatggaggctcctcctccatcgaagccaacgattgctccagttcctaaaagccaac  26924400                                   --------->ATERF1(1)                                              -                                   <------NtERF2                                                    -                                 <---------ANAC46                                                   <                                 <---------ANAC58                                                   <                                 <---------ANAC58                                                   -                                 <---------DEAR3(1)                                            <-----                                <---------LBD16                                                ------                           <---------ARR14(2)                                             <---------ANAC46                       <---------ANAC46        --------->DAG2             --------->YAB1--------->MYB52(1)           ---------->DOF2<-------GAMYB       ---------->DOF2            <---------YAB1----------->HVH21        --------->TOE2(3)<XXXXXXXXXXXXXXXXXXXXXMIR771             <---------GLK1(2)   <---------MYB52(2)   ttcttggtaaacttaaaggcttcttgggggttatggcggaggctaacaaaaagtctgaggcaaacccagaagcttataatatcgaagcactaacgggtaa  26924500                                                                                                    -                                                                                        <---------RAP2.6(3)                                                                                        --------->LBD16                                                                                        ------>NtERF2                                                                            <---------At4g35610    <-                                                                            --------->At4g35610    <-                                                  --------->ANAC58    ----------->RAV1(2)         <--                                               <---------REM1(2)      <---------At4g35610        ----                                           ------>ZmHOX2a(2)          --------->At4g35610      <-----                                         <-----------ARR10          <---------RAP2.3(2)--------->RAP2.6(2)                                         <---------ARR11(3)         <---------RAP2.6(2)--------->ATERF1(2) -------->ARR14(2)                   <---------At4g35610     <-----------HVH21         <---------ATERF1(2) -------->GLK1(2)                  <------NtERF2  --------->ANAC58  <---------DEAR3(1) <---------RAP2.6(2) -----------ARR10                 <-----------HVH21   ----------->HVH21     <---------ZAT2   <------- ---------ARR14(2)               ===============================RAV--------->RAP2.6(3)<---------LBD16 ------>TEIL                     --------->ALFIN1 --------->ANAC46 <---------ZAT18    --------------- ----DOF5.7(2)                <---------DEAR3(1)<---------ALFIN1  --------->ALFIN1    --------->RAP2.6(3) --->MYB52(1)       ------->TEIL <-----------RAV1(1)----------->RAV1(2) ----------->HVH21<------NtERF2   cgaatctgaacttatcgagatggacttgatgctcggtgtcgctgatctcaacacgcctgaagcagtcagtgcggctgaagctgctattgccggcattggt  26924600  Previous    Next  AGI:  At1g71420.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G09950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44556.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26921484    to: 26923761    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71430.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN66826.1) Range:  from: 26924102    to: 26924814    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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