Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------ATHB12                                     <---------ETT(2)         --------->ZAT18  <------ZmHOX2a(2)                                   --------->HSFB2a(2)       <---------ZAT18  =======================HOX2a_HOX2a       <---------At4g35610     --------->ANAC58 ----NtERF2                                --------->At4g35610     --------->ANAC46 ---->ALFIN1                               --------->ZAT2          --------->ANAC58 -----DEAR3(1)             <---------HSFB2a(2)     --------->AtMYB61    <------ZmHOX2a(1) ---ANAC58                 --------->HSFB2a(2)  <---------ALFIN1 --------->MYB46(3)        ---------- ---ANAC58            <<<<<<<<<TBF1        <---------ZAT2        ---------->DOF2<-----------------AGL1 -RAV1(2)         ------>ZmHOX2a(1)    <-----------HVH21   --------->AtMYB61    <---------ZAT14     <   gccgatcaagagattggctccttcttcttcgagagtattcatgtcagcttccacctctcgacctccaacaagcaggacagagttcacatttggcaaagtc  26875400                               <---------At4g35610                         --------->ARR14(2)                         <---------ARR14(2)                         ------->TEIL    --------->SPL7<---------DAG2 ----------->HVH21                      --------->TOE2(2)   --------->MYB52(1)   <---------CCA1(2)                --------->YAB1 --------->TOE1(2)  <---------SPL7------>NtERF2--------->ZAT18            <---------AHL20(2)           ----------->GT1 >DOF2         <---------ALFIN1--------->At4g35610<------NtERF2        <---------ANAC55(2) ---------------AtSPL3--------->ANAC55(2)       <---------DEAR3(1)     ----------->RAV1(2)   gagacgaacggctcttgccaccttatgtatctgcgctgatagctctctcgttggcgatataatcacccccattacctgagattgaaattgttaacatata  26875500                                                 <---------LBD16                                               <---------ANAC46                                          <---------ANAC58                                          <-----------RAV1(1)        ================================                                          --------->ALFIN1           ----------->HVH21                                          <---------ANAC46  <------ZmHOX2a(1)                                     =================RAV   ================HOX2a_HOX2a                                     ----------->RAV1(2) <--------P  ================================                                     <-----------------AGL1<------MYB83<---------LBD16                <---------ARR11(3)  -------->P <---------ANAC58      ------>ZmHOX2a(2)  --------->ANAC58                ------>ZmHOX2a(1)   <---------MYB46(3)                           --  --------->ANAC46            <-----------GT1  <---------ANAC58    --------->ARR14(2)             <--  --------->ANAC58     <---------At4g35610<---------ANAC58 <------MYB46(1)    --------->GLK1(2)<-----   gcataagctactactcttgatattcggctaattctccttacctggtgtggcttcggagggtaggagttggatcgacggataatctctatgaagggaagga  26875600                              <---------ANAC46                           <---------RAP2.3(3)                           <---------DEAR3(1)                 ---------->DOF2                         <---------MYB46(3)                  <------ZmHOX2a(1)             --------->ZAT18               <---------HSFC1(1)--------->DEAR3(1)    <---------ZAT2               <---------LBD16 --------->ANAC58 <---------ARR14(2)                   <------NtERF2<---------ARR14(2)     <---------ZAT14 --------->ANAC58 --------->ARR14(2) ------>NtERF2     --------->At4g35610         ------->TEIL ====HOX2a_HOX2a--------->LBD16<-----------HVH21<-----------RAV1(1) --------->ARR14(2)--------->LBD16 =HOX2a_HOX2a  <---------HSFB2a(2)  --------->ANAC46   <---------At4g35610      ----------->HVH21 -------->DOF2 --------->HSFC1(1)<---------DEAR3(1)    --------->ZAT14       ------>NtERF2 --------->ZAT14 ----ZmHOX2a(1)--------->HSFB2a(2)<---------ATERF1(1)  <---------ZAT14------>ZmHOX2a(2)    <---------ZAT18 -ZmHOX2a(1)  <---------LBD16<------NtERF2 <---------ARR11(3)================HOX2a_HOX2a  --------->ALFIN1   ggaaagctagggtttttccagaaccagtggctgcgtcgacgacaacatccttgtggctgcagaggaaagggatcgtctcggcctgaaccggagtgcagac  26875700                                                                               <---------HSFB2a(2)                                                                               --------->HSFB2a(2)                                                                            ------>NtERF2                                                                           --------->DEAR3(1)                                                                           <---------ALFIN1                                                                          <------NtERF2                                                                          --------->RAP2.3(1)                                                                          --------->ATERF1(1)                                                                          --------->DEAR4(2)                                                                          --------->ORA47(2)                                                                         --------->ABI4(2)                                                                         ------>NtERF2                                                                         <---------RAP2.3(1)                                                                         <---------ATERF1(1)                                                                        --------->RAP2.3(2)                                                                        --------->DEAR3(1)                                                                        <---------DEAR3(1)                                                                       --------->RRTF1(1)                                                                       --------->RAP2.6(1)                                                                       --------->DEAR4(2)                                                                       --------->ERF1                                                                       <------NtERF2                                                                       --------->RAP2.3(1)                                                                       --------->ORA47(2)                                                                       --------->ATERF1(1)                                                                      <---------ORA47(2)                                                                      <---------RAP2.3(1)                                                                      <---------DEAR4(2)                                                                      <---------DEAR3(2)                                                                      <---------RAP2.6(1)                                                                      <---------ERF1                                                                      ------>NtERF2                                                                      --------->ABI4(2)                                                                     <---------RAP2.3(3)                                                                     <---------ATERF1(2)                                                                     <---------DEAR3(1)                                                                     --------->ATERF1(2)                                                                     <---------RAP2.3(2)                                                                     <---------RRTF1(2)                                                                     --------->DEAR3(1)                                                                     <---------RRTF1(3)                                                                     --------->ALFIN1              <-                                                                    --------->RAP2.3(1)         -----                                                                    --------->ATERF1(1)       <------                                                                    <------NtERF2             <------MYB83                                             <---------AtMYB61      ------>NtERF2             <------MYB46(1)                  ------->GAMYB              <---------TOE2(2)      <---------ABI4(1)         <------              <---------WRKY12<---------ARR11(3)                   <---------RAP2.3(1)       --------              ---------->DOF2 --------->ARR11(3)                   <---------DEAR4(2)        --------              <---------WRKY38(1)        <---------At4g35610       <---------ATERF1(1)       <-------             --------->WRKY18(1)  --------->At4g35610             <---------DEAR3(1)--------->YAB1<--            <-----------HVH21--------->GLK1(1)                   <---------LBD16   <---------YAB1----      ----------->HVH21      <---------GLK1(1)         --------->ZAT14<---------ATERF1(1)    <-------  --------->ARR14(2)        <---------ARR11(3)         <---------ZAT14<---------RRTF1(1) <---------ZAT6  <---------ARR14(2)       --------->YAB1--------->At4g35610  --------->CCA1(2)------>ZmHOX2a(1)<----   ctcgaaaccggaccggtcaagcgcctcgatgatatcttctgagagcggaggtttgagttcagagaaacgcggcggcgcctcctcgatgatagtgttcggt  26875800                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                     ------>NtERF2                    --------->DEAR3(1)                   --------->DEAR4(2)                   --------->ATERF1(1)                   --------->RAP2.3(1)                   <------NtERF2                  ------>NtERF2                  <---------ATERF1(1)                  --------->DREB2C(1)                  <---------At4g35610                  <---------DREB2C(1)                  <------NtERF2                 --------->RAP2.3(2)                 --------->DEAR3(1)                 <---------DEAR3(1)                 --------->RAP2.6(2)                 <---------ATERF1(1)                 --------->ATERF1(2)                --------->ATERF1(1)                --------->RAP2.3(1)     ------->TEIL<---------ATERF1(2) --------ANAC46 --------->SPL7 ---->ALFIN1   --------->DREB2C(1) ---ANAC58     --------->ATERF1(1)          <----------DOF2 ---ANAC58     <---------ATERF1(1)          <---------DAG2 ->MYB46(2)    <---------DREB2C(1)   --------->ANAC58                              <------MYB46(1) ->MYB55(2)   <---------SPL7         --------->ANAC58                              <------MYB83 --MYB46(3)  <---------RAP2.6(2)     --------->ANAC46                             --------->MYB46(2) ----NtERF2 --------->RAP2.6(3)   <---------ZAT18                                 --------->MYB59 -->NtERF2----------->HVH21 <-----------RAV1(1)             ------>MYB46(1)       <---------TOE2(3) --DEAR3(1)--------->MYB52(1)   <---------At4g35610         ------>MYB83          --------->MYB111(1) -----DEAR3(1)------>NtERF2 <---------MYB46(3)    <---------AHL20(2)       <-----------------AGL1   ggcgatgaatccatgacggccgccgcttgcttgttgctcactccagctttattttttagacctacagcaaaattttgttcgaattaggtagtttttggtc  26875900                                                                           ---------->DOF2                                                                   <------------CBF                                                           --------->ARR11(3)                                                   <---------TOE1(3)   <---------ANAC58                                                   <---------TOE2(3)   <---------ANAC58             --------->ZAT18            ------>NtERF2  ---------->DOF2 <---------ANAC46             <---------ZAT18  <-------TEIL  <------------CBF      --------->ATHB12               >>>>        ---------->DOF2      --------->CCA1(2)    ---------->DOF2 <---------ICU4            <--------   cagtttctactaaagcccactaagagaagagatacatctctcggcccattgttaaagtaaagctctagtcattgcttaaaagaatacctctaaacattga  26876000                                             <---------RVE1(1)                                             --------->GLK1(1)                                            <---------GLK1(2)                                            --------->ARR11(3)                                            <---------ARR11(3)                                            <---------ARR14(2)                                            --------->ARR14(2)                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)                                >>>>>>>>>GATA-4                         <------------CBF                                >>>>>>>>>GATA-3                        -------->ATHB1                                <---------ARR11(3)                     <---------ICU4          <---------MYB52(2)    <---------ARR14(2)        <---------MYB52(1)          <------------MYB.PH3(2)<------ZmHOX2a(2)       --------->At5g28300      --------->At5g28300       --------->AGP1           <-----------HVH21           ------->TEIL     ----------->GT1            --------->ARR14(2)       <-------GAMYB --------->ATHB12<---------ANAC58    --------->ZAT6              --------->ARR11(3)   ------------>AtMYB77  ----------->GT1     ------ ----------->HVH21              >>>>>>>>>GATA-1     ----------->HVH21 <---------ATHB12 <---------ANAC58 >>>>>>>>WRKY18<---------LBD16  >>>>>>>>>GATA-2--------->GLK1(2)      <---------YAB1 --------->ARR11(3) ----CBF  --------->MYB46(3)   --------->GLK1(1)   <-----------HVH21  --------->ICU4<---------CCA1(2)   catttgacagtaacaaactcggagagcattcagagatctacaaacagatattctgtcacggttacctctgaaatcattggtgaaatgtatcttgtctaaa  26876100                                                 --------->DEAR3(1)                                                <------NtERF2                                               <---------RAP2.3(1)                                               ------>NtERF2                                              <---------ANAC46                                          <---------ANAC58      --------->ANAC58                                          <---------ANAC58      --------->ANAC58                                      ------>ZmHOX2a(2)    <----------ID1                                    --------->AGP1         --------->bZIP60(1)                                    --------->ARR11(3)     <---------ETT(2)                     -----                                    <---------ARR11(3)     <---------bZIP60(1)                 <-----                  --------->At4g35610<------ZmHOX2a(2)  ----------->TGA1<------------CBF      <------          --------->TOE2(3)        <---------GLK1(1)    ----------->HVH21                  <--------- ---->DOF2<----------DOF2          --------->GLK1(1)<------ZmHOX2a(2)<------NtERF2        <----------   agaagttggcatctttaatccgctcgagagcattcagagatcttacttgcgccgatcgatgacgacaaggcctcgattgtcgttcatcaacttccccgtt  26876200         <---------ANAC46         <---------ANAC58      <---------AtMYB61   ----------->HVH21   --------->ALFIN1 <---------TGA1a --------->TGA1a                                                          <---------ANAC58 <---------ANAC58                                                       <------MYB46(1) <---------O2                                                          <---------DEAR3(1) <---------ANAC58                        <---------ALFIN1   --------->SPL1(2)          --------->ARR11(3) ---->SPL7 --------->ALFIN1             --------->MYB46(3)  --------->ZAT14    <---------HSFB2a(2) ----MYB52(1)                          >>>>>>>>>>>>>>>>>LFY --------->SPL7<---------ANAC58 ---SPL7 <---------ANAC58             --------->ARR14(2)    <---------ZAT14    >>>>>>>ZML2        --- ---------SPL14                       <---------ARR14(2)  <---------SPL7<------MYB83 ---------->TaMYB80 -------AGL1    <-----------GT1      <------ZmHOX2a(1)<-----------GT1 <--------P<---------LBD16  ----   cggacgtgatggtgtgtttcactctgtttatcaagaagaggaaccactgtgtaatatcacagtacggagatggtaggcgttctagggaatatcaggtata  26876300  Previous    Next  AGI:  At1g71280.1    Description:  DEAD/DEAH box helicase, putative. Identical to Putative DEAD-box ATP-dependent RNA helicase 55 (RH55) [Arabidopsis Thaliana] (GB:Q9FVV4); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G71370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41433.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain D Range:  from: 26873803    to: 26875814    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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