Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ==========================HOX2a_HOX2a                                      ------>ZmHOX2a(2)                                     ===========================HOX2a_HOX2a                         <                                     <------ZmHOX2a(2)               <-----------ARR10              <                                    <---------ARR14(3)      ------>ZmHOX2a(2)                       <                                    --------->ARR14(3)     <---------GLK1(1)                       <-                                    <---------AGP1         <------ZmHOX2a(2)                       --                                    --------->AGP1         --------->GLK1(1)                       --                                    <---------ARR11(3)    <---------AGP1                           --                                    --------->ARR11(3)    --------->GLK1(2)                        --                                    --------->ARR14(2)    --------->ARR14(2)             --------->CCA1(2)                                    <---------ARR14(2)    <---------ARR14(2)      --------->At4g35610                                   --------->RVE1(1)      --------->ARR11(3)   <---------At4g35610 <-                         <----------DOF2                  <---------ARR11(3)   <---------ZAT2      --              ------>ZmHOX2a(2)   ----------->ARR10       <-----------ARR10    --------->ZAT2    <---            <---------AGP1      ---------->DOF2          <------ZmHOX2a(1)     --------->At4g35610<--   gtcaatactctttggatctatctcatgctttgagaaaagatcttggacaatagcgaagaggatctcatgagtttcttctctagctgcagagatagaagcg  26833500     <---------GLK1(2) ------MYB83 ------MYB46(1)                    <-----------HVH21 ---------ANAC46                  --------->ANAC46 --------AtMYB61            --------->ANAC58                                  <------ZmHOX2a(2) ------->MYB46(2)           --------->ANAC58                          <---------At4g35610 ------->MYB52(2)       --------->ANAC58                              --------->ZAT2 ------->MYB111(1)      --------->ANAC58                              <---------ZAT2 ------->MYB55(2)      <---------TOE1(2)                              --------->At4g35610 --------MYB46(3)     <-----------RAV1(2)                      <---------ARR11(3)       <---------ANAC58 ------->MYB111(2)<-----------HVH21<-----------TGA1            --------->ARR11(3)    <----------DOF2 ------MYB52(1)  =================RAV             ----------->HVH21  <-----------RAV1(1)<---------ANAC58 -------MYB55(1) <-----------RAV1(1)    --------->ZAT6------>ZmHOX2a(2)      --------->ARR11(3)   tttggtggaatctcatggactgtcgcaggcacgctcgcgtcatcactaatccctgatcgctctaaaatcttctgctggagatcaagactttcttgatcaa  26833600                <---------GLK1(2)               <---------At4g35610              ----------->ARR10          ----------->GT1      <---------ARR14(2)                    --------->ANAC58      --------->ARR14(2)                    --------->ANAC58                                    -----    --------->LBD16                      --------->ZAT2       <-------TEIL                <---------AHL20(2)   --------------->AGL15                 <---------ZAT2    <---------MYB46(3)       <---------ANAC46  <-----------------AG                --------->LBD16    <------ZmHOX2a(1)          ----------->GT1  ----------------->AGL2           --------->MYB52(1) <-----------RAV1(2)          <---------------AtSPL8  <-----------------AGL1 --------->YAB1  --------->At4g35610 <--------P            <---------TOE2(3)  <---------LBD16        --------->AHL20(2)--------->ZAT18 ----------->GT1       <---------ATHB12 --------->MYB52(1)     <---------ATHB12 <---------At4g35610<-------GAMYB      --------->WOX13(1)   aaacaccggaaatggtaagatgctcaatgaaattagagaccggagctcgcaagaagtcaggaggttgataacatgagaagtcaatgaggtatataataca  26833700                                                                                                   <-                                                                     ----------->GT1            <----                                 --------->YAB1                     --------->DAG2    <---------ZAT6<                            <---------At4g35610          <------ZmHOX2a(1)  --------->DAG2      -----                     ---------->DOF2          <---------At4g35610  ---------->DOF2   <---------WOX13(1)                   --------->MYB46(3)<---------ZAT14   --------->ANAC46    ---------->DOF2   <------ZmHOX2a(1) ---->ARR11(3)--------->YAB1--------->At4g35610     -------->P----------->GT1  <---------ARR11(3)----   tcttggtttgaagaaatagtaaccaaagacagctatgagaacacaggctgatgctaccaggaattggtgaaaagtgataaaggtctgagtgataaggaga  26833800                                                  ---------->DOF2                                          --------->MYB52(1)                                          ------>MYB83     --------->YAB1                       ------>MYB46(1)   <---------WOX13(1)                   <---------MYB59                                            <- --------->ATHB12                       <---------------AGL15                                     <-- ---------DOF2                         ----------------->AGL1                                     <-- -----ARR11(3)                   --------->HSFC1(1)                                               <-- -------TEIL                     <---------HSFB2a(2)                  *TSS                    <------ ---->ARR11(3)---------->DOF2    <---------HSFC1(1)        --------->ANAC58               <---------ANAC46 ----->At4g35610                 --------->HSFB2a(2)       --------->ANAC58          <-----------RAV1(1)   gcttcattgatgaaatgaaagctcgattccatattctagaaaccaaactgggaaaagagagaagcaagatgatcaagagttttgtttttgtggcatatgt  26833900                                                                                                   --                                                                                                 <---                                                                 --------->DAG2                  <---                                                               ---------->DOF2                   <---      <---------ZAT6    ----------->GT1                --------->ANAC58                          <--- ------GAMYB          ----------->GT1  <-------GAMYB   --------->ANAC58                          <--- -------MYB46(3)  <---------TOE2(3)   --------->MYB52(2)       ====================================== ----MYB83       --------->DAG2       <---------MYB46(3)     ----------->HVH21                   ---- ----MYB46(1)   ---------->DOF2       <-----------RAV1(1)   ------->MYC3                         ---- -----RAV1(1)--------->YAB1        ------------>MYB.PH3(2)  <-------MYC3                         ----   tggttatagtgtttagcataaaggaagtgaaaaacgaagtttgttgcatcacaaggtaagcatgtgaaaggtgtccaaaacaaggatgaaattcaggtct  26834000   --------------->AGL15                                <---------MYB52(1)  ----------------->AGL1                               <-------GAMYB  <---------ANAC46                                     --------->At4g35610 --------->HVH21                                       <---------At4g35610 ------TGA1a             --------->ATHB12       <---------ANAC46 ------O2             --------->YAB1            <---------ANAC55(1) ------ANAC55(2)      <---------AtLEC2          <---------ANAC58 ------ANAC58     <---------ANAC58              <---------ANAC58 ------ANAC58--------->GLK1(2)                  <---------bZIP60(2) ======bZIP_DOF   <---------ANAC58              <---------ANAC55(2) ----->TGA1a <---------ARR14(2)                 --------->ANAC55(2) ----->O2    --------->ARR14(2)            <---------ICU4  ----------->GT1  <-------GAMYB  --------->TOE2(3) ----->ANAC55(2)  <---------AtLEC2        ------->TEIL<---------MYB46(3)   <-----------RAV1(1)<------   cgtgacctatatgagaatttgcatgcatgatttcatgggaaatgaacattacgtgtctgttgagtaacttatggtctctgttgctaatctctacctctat  26834100                                                   <---------ANAC58                                      --------->ANAC58                        <-----------RAV1(1)        <---------ANAC58    -------->P <---------ZAT6    <----------DOF2  <---------STY1(2)            <---------YAB1    ------>MYB83        <---------MYB46(3)        --------->STY1(2)  <----------DOF2    ------>MYB46(1)   <---------GLK1(2) --------->YAB1            --------->ARR11(3)  --------->MYB46(3)--------->ICU4    --------->ANAC58    <---------ZAT14  <----------DOF2 ---CCA1(2)  <---------ANAC46 ------->TEIL   <---------YAB1       <---------ARR11(3)   ctcaccaactccatgtagtggaaagattgttgcatctttcaagcataatgctagcttgagagaagtgagaactttgactttgtaattggagacgaagacc  26834200                                                             ------------>CBF                                                             --------->ZAT18                                                             <---------ZAT18                                                            ----------->GT1                                                           <------MYB46(1)                       --------->AHL20(1)                <--------P                       <---------AHL20(2)               <---------MYB52(1)                  --------->AHL20(2)                    <-------GAMYB                  <---------AHL20(1)                   <---------DEAR3(2)                    <-------                  <---------AHL20(2)                   <------MYB83                          <-------                  --------->AHL20(1)                   <------MYB46(1)            ------>ZmHOX2a(2)            --------->TOE2(3)                     --------->DAG2  <---------ARR11(3)      <---------MYB52(1)           ----------->GT1                       ---------->DOF2  --------->ARR11(3)    <---------MYB46(3)          <---------ARR11(3)                 <----------ID1<------MYB83          <------ZmHOX2a(2)    <-----------GT1    --------->AHL20(2)  ---------->DOF2--------->SPL7<----------DOF2<-------------   agattaatacaatatgttaataaaataaaataactaaaatcaaaaaaaagaaaaagtcggtagggcaatatcgtctttttccgatcgtggtcgtttctta  26834300                        --------->ANAC58                        --------->ANAC58                     --------->MYB46(3)                  <---------HSFB2a(2)                        --------->HSFC1(2)                  <---------HSFC1(1)                         <---------HSFC1(2)                  --------->HSFC1(1)                         --------->HSFB2a(1)           <---------MYB46(3)               <---------ARR14(2)                               ------>ZmHOX2a(2)           --------->MYB52(2)  *TSS         --------->GLK1(2)<---------HSFB2a(1)             <------- --ANAC58 <---------TOE1(2)  --------->ARR14(2) --------->LBD16                            --------->ARR14(2) --ANAC58<---------MYB52(1)  <---------ARR14(2)--------->ANAC46 ------>MYB83               <---------ARR14(2) --------WRI1     --------->HSFB2a(2)       --------->ARR14(2)  ------>MYB46(1)     --------->ATHB12   caagtttcttcgttcgttctctagaaacgcagaaatggagactcagtatccgaaactaatcgaaccatccaagacccgaattggatggattgggatcggg  26834400  Previous    Next  AGI:  At1g71160.1    Description:  beta-ketoacyl-CoA synthase family protein. Identical to 3-ketoacyl-CoA synthase 7 (KCS7) [Arabidopsis Thaliana] (GB:Q9C992); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24701.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328); contains InterPro domain FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601); contains In Range:  from: 26832363    to: 26833870    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71170.1    Description:  6-phosphogluconate dehydrogenase NAD-binding domain-containing protein. similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24698.1); contains InterPro domain 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Dehydrogenase, multihelical; (InterPro:IPR013328); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD Range:  from: 26834331    to: 26835761    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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