Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------At4g35610                                                                                         --------->At4g35610                                                                                <----------DOF2                                                                              <------NtERF2                                                                             --------->LBD16                                                                             ------>NtERF2 --------->KAN4(2)                                  ------>ZmHOX2a(1)        <---------RAP2.6(3) -----GAMYB                                         ----------->HVH21       <---------ATERF1(2) ---MYB83                       =========================HOX2a_HOX2a        --------->RAP2.6(2) ----->MYB52(2)           <---------MYB52(1)      ------>ZmHOX2a(2)         --------->ATERF1(2)   <-- ------MYB46(3) ------->GAMYB<---------YAB1     --------->ARR11(3)         --------->ATERF1(1)    <-- ---MYB46(1)  <---------At4g35610          <---------AtLEC2        --------->ATHB12   <-------TEIL--- ------->GT1  --------->At4g35610         --------->ZAT18     <---------YAB1<---------RAP2.6(2)   <-- ---P        --------->MYB52(1) ------>ZmHOX2a(1) ----------->RAV1(2)      --------->RAP2.6(3)    ---   ggttattctgaaactcaactgaaactctgttatccttcttcttgtgcattgatcctgacctgttcttatcgattgaagccggcttaaattcatctgcaag  26815100       <---------YAB1     --------->YAB1                            <-----------GT1                                  -----    --------->ICU4                   <---------TOE2(3)                                          ----- -------ZAT14                        --------->MYB59                 --------->YAB1             <---- -----TEIL                    ----------------->AGL1            --------->YAB1       <---------O2 ------>ZAT18                 <-----------------AGL1            ----------->GT1      --------->O2 -------ZAT18--------->ARR11(3)--------------->AGL15       <---------YAB1  --------->YAB1  ---------- ------>ZAT14<---------ARR11(3)<---------------AGL15       <---------TOE2(3)  <---------GLK1(2) <----   tacacaattatcaaacatcttattctatgtattccaatttaggtcgaattaacccaaaattaagaatggtaacataatcagaaactcacatcgcaaagtg  26815200                                             <------ZmHOX2a(2)                                            <---------ARR11(3)                                      ===========================HOX2a_HOX2a                                      ==============HOX2a_HOX2a                                  --------->TOE1(2)                               <---------ARR14(2)                              ======================HOX2a_HOX2a                              <------ZmHOX2a(1)                                            <---------ANAC46   <---------AHL20(2)      <------NtERF2    --------->ARR11(3)                           --------->ZAT14 ---->ZAT14                <---------At4g35610                  <---------LBD16          <---------ZAT14 ---->ZAT18                --------->At4g35610            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----ZAT14         <----------DOF2   <------ZmHOX2a(1)   ------>ZmHOX2a(2)            <---------LBD16 >DOF2            <---------YAB1 --------->MYB46(3)      <---------At4g35610        <---------CCA1(2) -----ZAT18 <------ZmHOX2a(1) ===================================HOX2a_HOX2a     <-------TEIL -------   cagaatttatgggaggagtcatctttggcagaggaaccaaggacaagatcataccattgatctgtcttcggggcagtactaggctcatctctggagtgat  26815300                                                                                                    <                                                                                                    -                                                                                                    <                                                                            <----------DOF2  <-------                                                                      <---------O2           --------                  <---------WRKY12                                    --------->ANAC46      <--------                  <---------WRKY38(1)                            <---------ARR14(2)         ---------                 <------ZmHOX2a(2)                           <------ZmHOX2a(2)              <--------           --------->ZAT2                                   --------->ARR11(3)              ---------  --------->ARR11(3)                                <----------ID1    --------->O2         <---------ARR11(3)  <---------ARR11(3)  --------->ATHB12        <------ZmHOX2a(2)  --------->ARR14(2)        --------->ARR11(3) -->ATHB12 <---------ZAT2            <---------ARR14(2)     <---------ARR11(3)     <---------ARR14(2)   tcgacatcttcgaagctcgatcaacgattgctcaaggtgaatccatcgatcaaggagacgaagatcaaatccacgagactttgcgaaacttgagatatct  26815400                                       <---------O2                                       <---------ANAC55(2)                                       --------->O2                                       --------->TGA1a                                       ========================bZIP_DOF                                       --------->ANAC55(2)                                       <---------TGA1a                                   <---------MYB52(2)                                  <---------At4g35610                                  --------->ZAT2                                  --------->At4g35610                           ----------->TGA1                        <---------ARR14(2)                        --------->ARR14(2)                      --------->LBD16  --------->ANAC46                                         ----- ---------GLK1(2)    <---------HSFB2a(2)                                                      ------>ZmHOX2a(2) -------->ARR14(2)   --------->HSFB2a(2)                                                      <------ ---------ARR14(2)<---------ARR14(2)----------->HVH21                           <------ZmHOX2a(2)  -- --ARR11(3)      <------ZmHOX2a(1)<---------ZAT2                               <---------ARR11(3)<--- ->ARR11(3)  --------->LBD16     ------->TEIL                           ------->TEIL<---------GLK1(2) -RVE1(1)   <---------ANAC58  --------->ANAC58                          <---------ARR14(2)   <------ZmHOX2a(2) >GLK1(1)   <---------ANAC46  --------->ANAC46                          --------->ARR14(2)   -------- -GLK1(1)   <---------ANAC58  --------->ANAC58                <------NtERF2 --------->LBD16 <-------- >RVE1(1)  <---------LBD16 ----------->HVH21        <----------DOF2     --------->GLK1(2)   ---------   ccgattctcaaattgcggaggacccagaactgacgcagctcacgtagggtttttcttttagggcagagaagacgaatccgagatcagaattttggatccg  26815500                                                                                    ------>ZmHOX2a(2)                                                                                  <---------AGP1                                                                                  --------->ARR14(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR11(3)                                                                                  <---------ARR14(2)                                                                                 <---------CCA1(2)                                                                               --------->ALFIN1                                                                              <-------MYC3                                                                              ------->MYC3       <---------ARR14(2)                                                     <-------PIF5     --------->DEAR3(1)                                                       <-------MYC2    *TSS                                                                      <-------MYC4    <------NtERF2                        <-------TEIL                         ------->MYC4   ------>NtERF2                      <---------ANAC46                        ------->MYC2   --------->LBD16                    <---------ANAC55(2)                     ------->PIF5  --------->ANAC46                    <---------ANAC55(1)                    --------->PIF3(3) <---------LBD16                      --------->ANAC55(2)                    <---------O2         <-- <---------MYB55(2)                   <---------ANAC58                       --------->O2         --- --------->MYB46(3)                   <---------ANAC58                       <---------PIF3(3)    <-- ---->LBD16                          --------------->AtSPL3                  --------->TGA1a    <---- ---LBD16<-------TEIL                <---------------AtSPL8                  <---------TGA1a    <---- ------->ARR14(2)                --------->WOX13(1)                        <---------ALFIN1    <----- ------MYB52(1)              <-----------GT1                             <----------------PIF3(2)<--- ->ARR14(1)         <-----------GT1  <---------------AtSPL3           <---------ANAC58    <------MYB83 -ARR14(2)         <---------AHL20(2)<-----------------------TaNAC69(2) --------->PCF2    <------MYB46(1) >ARR14(2)     <----------DOF2 ------------>CBF                       <---------ANAC58 <---------MYB52(1)   gtacccgccgattcatgctttttaatcttcttaaccaattacgtacagacacgagttagtatgtctggttttgggttccacgtggatctgtttggtttgc  26815600                 ------->MYC4                 <-------MYC3                 <-------MYC4                 <-------PIF4                 ------->MYC3                 --------->TOE1(2)                 ------->PIF4                 ------->PIF5                 <-------PIF5                <---------O2                --------->PIF3(3)                --------->O2       <---------AHL20(2)       --------->AHL20(2) <---------ZAT2 =================================================bZIP_DOF <------NtERF2  <---------PIF3(3) <---------At4g35610 --------->At4g35610 ----NtERF2   <---------ALFIN1                        <----------DOF2                              <- ------>ATERF1(1)<-------MYC2                  <---------ANAC58                          <---------ARR14(2) -------At4g35610------->MYC2                  <---------ANAC58                          --------->ARR14(2) -----RAP2.3(2) --------->TGA1a         --------->ANAC46                               --------->LBD16 -----RAP2.6(2)<---------TOE1(2)        --------->ANAC58                   <---------AHL20(2)      <- ----LBD16    <------------OsbHLH66     --------->ANAC58   ---------->ID1 --------->AHL20(2)--------- ------RAP2.3(1)<---------TGA1a  <---------CCA1(2)   <---------DAG2   <---------YAB1 <---------LBD16   ggcagctattttattcccacgtgcgattactgatcaaatctcaagccaagcgttcccttttgtcgtcttgttctgatttaatattaaaccggaaatgacc  26815700              <---------ZAT6      --------->At4g35610      <---------At4g35610                                                                    <------- --------->WOX13(1)  <---------ANAC46                          <----------DOF2             --------->MYB52(1) -----ZmHOX2a(2)   <------MYB83    --------->ANAC58 --------->ATHB12                     ------------ --------ATHB12    <------MYB46(1) --------->ANAC58 --------->ATHB51           <---------REM1(1) -->HVH21 <---------MYB52(1)      ---------->ID1   <---------YAB1           <-----------RAV1(1)    --   gatcattcagccgctagtgtttggtttgtatattttgacgcattaatgggcttataattgggcttcttttttagactcgtgttgtcgctagcccaatgga  26815800                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              <------                             --------->ARR11(3)                                               <------                          <---------GLK1(2)                                                   -------    ----------->HVH21--------->AtMYB61                                                        -------  --------------------->WRI1 <---------ARR11(3)                                               <------ --ATHB12            ------->GAMYB                                                      <-------TEIL >CBF                ----------->RAV1(1)       ----------->GT1            *TSS         --------->CCA1(2) ------->GLK1(2)    --------->MYB46(3)  <---------TOE1(2)           <---------ATHB12  <---------ARR11(3)   taatctttgacagtatcgttcaaccacagattatcttcttcgcacgatgtgataaatacaaaattttcaaatcaagaagaaacttcaagatacaaaatta  26815900    --------->YAB1   --------->ICU4   <---------ATHB12 --------->WOX13(1) --->ATHB12       --------->ALFIN1 -->ATHB1         <------NtERF2 ----ICU4 <---------ARR14(2) --->ATHB51     <---------ANAC58                                                             -------- ---AHL20(2)    <---------ANAC46                                                          --------->LBD16 ---ATHB51--------->ARR11(1) --------->At4g35610           <---------WOX13(1)            <-----------RAV1(2) -->ICU4  --------->ARR14(2) <---------At4g35610         --------->ATHB12      <---------ANAC46 -->AHL20(1)    <---------ANAC58<-----------HVH21    <<<<<<<<<TBF1       <-------MYC3<---------At4g35610 ---YAB1----------->ARR10   ------->TEIL       ---------->ID1            ------->MYC3--------->At4g35610   ttgcaatcagtagatttggcgtggatgatgcatctgtcatcgcaatcttgtcttcttcttcattgacaagttccatgtgtattgtgtagctccaggtgtt  26816000  Previous    Next  AGI:  At1g71080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38050.1); similar to unknown [Populus trichocarpa] (GB:ABK95382.1); contains domain PTHR15970:SF2 (PTHR15970:SF2); contains domain PTHR15970 (PTHR15970) Range:  from: 26813503    to: 26815504    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71090.1    Description:  auxin efflux carrier family protein. similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT5G01990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17070.1); contains InterPro domain Auxin efflux carrier; (InterPro:IPR004776) Range:  from: 26815874    to: 26817792    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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