Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->TOE2(3)      --------->YAB1   --------->DEAR3(1)  --------->ATERF1(1)                                                        --------->ARR14(2)  <------NtERF2                                                             <------ZmHOX2a(1) <---------ATERF1(1)                                                      <---------TOE2(2) ------>NtERF2                                 --------->LBD16            <---------TOE1(2) -------->ANAC46                              --------->ANAC46        =============HOX2a_HOX2a -------->RAP2.6(2)                           --------->LBD16         <------ZmHOX2a(2) -------->RAP2.3(2)                           <---------LBD16      <---------MYB46(3) ------->RAP2.3(1)                           --------->TOE1(2)    --------->ALFIN1 -------ATERF1(1)                            <---------LBD16     --------->At5g28300 -------RAV1(2)                            <---------REM1(2)    <---------ANAC46 ---ALFIN1                                 ------->TEIL        <---------DEAR3(1)     <---------TOE2(3) ---->RAV1(1)                            --------->ZAT14      --------->ZAT18<---------ARR14(2) --->HVH21      --------->ZAT6           <---------ZAT14    --------->ZAT18 --------->ATHB12   aggcgccatcgtaaatgaacactctagcaaactggtctgagactgtacccgggacaatattgtgcgcggtggatcacaggattgggttaatgtactggac  26634500                                                                                                  <--                                <---------MYB52(1)                                --------->At4g35610                         <-----------HVH21                             <---------MYB52(1)         ---                      ---------->DOF2   --------->At4g35610            ------>ZmHOX2a(1)          <--            --------->YAB1  --------->MYB52(1)                        --------->TOE2(3)  --------->CCA1(1)        <---------AHL20(2) <-----------GT1        --------->ZAT18 <----------DOF2 <---------At4g35610   ggacatcgatataatcaaaaactataaagtcaccggtttgtgagcgaaatagtgcatagtaaaccgctctttccttagttcttcagaagaaatatccaaa  26634600                                  <-------GAMYB                                 <---------MYB46(3)                                 <------MYB46(1)                                 <------MYB83                               <--------P                              <-------GAMYB                              <---------ANAC58                              <---------ANAC58                             <---------MYB46(3)                             --------->MYB55(2)                             <------MYB83                             --------->MYB52(2)          <---------ANAC58   <---------DEAR3(2)          <---------ANAC58   <------MYB46(1)          <---------ANAC46  <---------TOE2(2)      <---------WOX13(1)    <---------TOE1(2) -------GLK1(2)             <---------AtMYB61 ------>ARR11(3)           <---------MYB52(1)  <---------TOE1(2)                                  <-- -------ARR11(3)       <---------ARR11(3)     ------>ZmHOX2a(1)         <---------ICU4          <----   gatttttgactgacttgtttgacaatatcgttggttggttaagcgttcctatgtaaaattttgttccctctgaaacattgcattatctaaatctatgtct  26634700                                                                             <---------ANAC58                                                                             <---------ANAC58                                             <---------AHL20(2)         <-----------RAV1(1)                                <---------TOE2(3)              --------->CCA1(2) ---------GT1                  ---------->DOF2              <---------TOE2(3)<---------ANAC46 ------DOF2             <----------DOF2 <---------AHL20(2)  <---------YAB1 <---------ANAC46   ttacattccacattctaatgaaatcgcattaactaaagttattttatatttttaaactaattaagataagagttgtgttgtgtgtcccaaaaaatgtctg  26634800                                                                       <---------PCF2                                                                      <----------ID1                                                              <---------ZAT14      ----------->GT1                                        --------->YAB1       --------->TOE2(3)    --------->ARR11(3)                             <---------ZAT18                 <----------DOF2      <---------ARR11(3)              <------------CBF       --------->YAB1---------->DOF2    <----------ARF1          *TSS            --------->ICU4   --------->ZAT18  --------->TOE1(3)     --------->ALFIN1----------->GT1            <---------YAB1<------------CBF    --------->TOE2(3)   <-----------RAV1(1)     --------->GLK1(2)   aagtcaaaaatgtcttaattgtttggcgaattgcactaaaaataagaaccctaaaaagtcttactttagtgtgggacaagaagagatgttaaaatctgaa  26634900                                                                                     <---------At4g35610                                                                                     --------->At4g35610                                                                                <---------GLK1(1)                                                                                --------->GLK1(1)                                                                                <----------DOF2                                                                              <------NtERF2                                                                             ------>NtERF2                                                                            --------->ATERF1(2)                                                                            <---------ATERF1(2)                                                                            --------->DEAR3(1)                                                                            --------->RAP2.3(2)                                                                            --------->RAP2.3(3)                                                                            <---------DEAR3(1)                                                                           --------->DEAR4(2)                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                          ------>NtERF2                                                   <<<<<<<<<TBF1          <---------ATERF1(1)                    --------->DAG2              <<<<<<<<<TBF1            --------->ANAC46                   ---------->DOF2           <<<<<<<<<TBF1   <-----------GT1--------->DREB2C(2)             ----------->TGA1             <<<<<<<<<TBF1  <<<<<<<<<TBF1  --------->MYB46(3)           <---------At4g35610          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->LBD16     <---------ANAC58                  <<<<<<<<<TBF1  <<<<<<<<<TBF1     <---------MYB55(2)     <---------ANAC46                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->LBD16--------->REM1(1)     <---------ANAC58             <------------------------ANAC81     ------>ZmHOX2a(1)<----------DOF2   aacaatttcttgaagatgacgaaaagtgttcacatgtcttcttcttcttcttcttcttcttcttcaccattcctcccgccggctttccgcttcatcacca  26635000                                        ---------->DOF2                                        <---------DOF5.7(2)                                      <---------MYB52(1)          <----------DOF2                                      --------->DOF5.7(2)       ---------->ID1                                     <-------GAMYB     --------->AHL20(2)                              <----------DOF2      --------->AHL20(2)                     ------>ZmHOX2a(1)                              <---------DAG2       <---------AHL20(2)           <----------DOF2                <-----------GT1      --------->LBD16   <---------AHL20(2) --------------->AtSPL8   ttttgaagttttggtatttctccattttcttcctttttccgttaaagctccatttttttaatttttgtctttattttctgaactttcttctcctcattca  26635100                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                                                       <---------ARR11(3)                                                       <---------ARR14(3)                                                       --------->ARR14(3)                                                       <---------ARR14(2)                                                       --------->AGP1                             <---------TOE2(3)         --------->ARR11(3)                             <---------TOE1(3)         --------->ARR14(2)             <---------GLK1(1)                      --------->HSFB2a(2)                  <----------DOF2       <----------DOF2 ------->TEIL                 <---------HSFB2a(2)      ---------->DOF2   acaattcttctttcgatttcccatgaagcttaaggttccattctcaacttgtttcgagatcttgtgtttcaattttctgaaaagtttttgactttgttga  26635200                                                                                       --------->At4g35610                                                                                       <---------ZAT2                                                                                <---------ZAT18                                                                                --------->ZAT18                                                                              --------->ANAC46                                                                              --------->ANAC58                      <---------ZAT2                                          --------->ANAC58                      <---------At4g35610    --------->ARR14(2)              <---------LBD16                      --------->ZAT2         <---------ARR14(2)             <-----------GT1 <--------              <---------ARR11(3)            <---------GLK1(1)           <----------DOF2<---------At4g35610   tgactcaatcttacagggtcttcgagctgggctcttgtctatttggctatctgggtttcttctaatcgctctctctttctacggcactcagcttctatct  26635300                                                              --------->YAB1                                                              <-----------GT1           ----------->HVH21                       --------->At4g35610      --------->ANAC58 --------->ARR14(2)          <---------At4g35610      --------->ANAC46 <---------ARR14(2)       --------->At4g35610      --------->ANAC58 <---------GLK1(2)        <---------At4g35610   --------->ZAT14   ----------->ARR10         <-----------RAV1(1)     <-----------GT1 -CCA1(2)  <---------ATHB12        --------->GLK1(2)       --------->YAB1  --------->ZAT14------>ZmHOX2a(1)   ccaacttcactcaatgacccatttagatactctggcgattccattgctactgctgctccaagaatcaccattttcacttctctcaatgtctcctccttgg  26635400  Previous    Next  AGI:  At1g70620.1    Description:  cyclin-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO16100.1) Range:  from: 26630229    to: 26634767    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g70630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16099.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 26634895    to: 26637765    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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