Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------ARR11(3)                                                           ------>ZmHOX2a(2)                                         <---------ICU4  <---------GLK1(2)                                         <---------GLK1(2)<------ZmHOX2a(2)                                      --------->YAB1     <---------ARR14(3)                     -----                                   --------->GLK1(1)     --------->AGP1 <---------At4g35610    ------       <------ZmHOX2a(2)           <---------GLK1(1)     --------->ARR11(3)               --------->YAB1      --------->ARR14(2)          <---------ARR11(3)     --------->ARR14(2)          <-------TEIL<---      <---------ARR14(2)          --------->ARR11(3)     <---------ARR11(3)         --------->CCA1(2) ----ZmHOX2a(2)                --------->LBD16           --------->ARR14(3)        <---------ARR14(2) ----->ARR11(3)               --------->LBD16            <---------ARR14(2)        --------->ARR14(2) ------ARR11(3)    --------->GLK1(2) <---------YAB1     <---------CCA1(2)         --------->At4g35610   atcaggccgatccaaacagagaatcaaacgtcccgagatatcataatctctctgatacagatcttcaacatctcagaagctatcagatacaatcacaacg  26569100                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                            --------->ARR14(2)                                         --------->YAB1                                       <-----------HVH21                                   --------->ANAC46                                 <---------ALFIN1                               --------->CCA1(2)       ---------->DOF2        --------->ARR11(3)     --------->ANAC58         <---------ARR14(2)             --------->ETT(2)     --------->ANAC58         --------->AGP1<---------ARR14(2)<---------DDF1          <---------AHL20(2) -->GAMYB----------->GT1      --------->ARR14(2)             <---------ETT(2)         --------->AHL20(2) --->MYB46(3)                 <---------ARR11(3)         <---------HSFC1(2)        --------->YAB1 ------LBD16    ----------->GT1<------ZmHOX2a(2)    --------->YAB1      --------->ANAC46   acggaaaacgaaagtgaatagaaaattcaacagatccacactatcagatcgtaatcagaaacgtcgacatatatacacatcttaaaaataaaatcgcatt  26569200                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                -----                          ------->GAMYB                                                        <-----                         --------->ANAC46                                                      ------                    --------->TOE2(3)                                                         <------                    --------->AtMYB61                                                         -------                  -------->P       <---------ICU4                                             <------               <------ZmHOX2a(2)   --------->YAB1                 --------->ANAC58            -------              <---------ARR11(3)  <---------ATHB12                --------->ANAC46            <------              --------->ARR11(3)--------->WOX13(1)     --------->YAB1--------->CCA1(2)        -------    --------->YAB1------->TEIL<---------ATHB12   XXXXXXXXXXXXXXXXXXX>MIR172B*                 <------   <---------ATHB12 --------->TOE1(3)    --------->HSFB2a(1)      --------->ANAC58        <-------TEIL   atccattcatgagcaagatcaacctcaacgaaatcaatcacgacgattccaaaaccatcaaaattcacaagaaacgagaaatgcagaacacatacagatc  26569300                                                                     ------>ZmHOX2a(2) ------->ANAC58                                                     <------ZmHOX2a(2) ------->ANAC58                     ---------->DOF2                 --------->CCA1(2) ------->ANAC46                   <------ZmHOX2a(2)                --------->ARR11(3) ->ZmHOX2a(2)               ------>ZmHOX2a(2)                      --------->AGP1 -ZmHOX2a(2)               <------ZmHOX2a(2)                       <---------ARR11(3) --->CCA1(2)              --------->ARR11(3)   ------>MYB46(1)     <---------ARR14(2) ---ARR14(2)              --------->AGP1<---------ANAC58           --------->ARR14(2) -->ARR14(2)              <---------ARR11(3)   ------>MYB83        <---------AGP1 -----ARR10               <---------AGP1<---------ANAC58          <---------GLK1(1) -->ARR11(3)              --------->ARR14(2) --------->TOE1(2)    --------->GLK1(1)         --------- ---AGP1                 <---------CCA1(2) ------->TEIL     <---------ANAC46               <---------ARR14(2) -->AGP1 <---------TOE2(3)<---------ARR14(2) --------->TOE2(2)   ----------->ARR10         --------->ARR14(2) ---ARR11(3)            ----------->ARR10  --------->SPL7  <---------LBD16               ----------->ARR10   tacgctaaattgagaatgtatgagcacagatcttagatcaaagcgtacctacgaagaatgtttcggagagatctgagagagagagaccgcgaagaaacgg  26569400                                                                   <------NtERF2                                                                   --------->RAP2.3(1)                                                                   ----------------->AGL1                                                                  ------>NtERF2                <-----                                                               <---------TGA2(2)              -------                                                              ----------->HVH21          ------------                                                         --------->ANAC58          <---------ANAC46                                                         --------->ANAC58          --------->ALFIN1                                                       --------->CCA1(2) *TSS   --------->ALFIN1 >MYB52(1)                ---------->DOF2   --------->GLK1(2) ----------->TGA1  <---------AtMYB61   agagagcgagagagactcgaagaaatttgaaagagaaatgtgagagaagcttaagagaaacgcgatgacgccgaaatgggaagtggtggagagcaatttt  26569500                                                                                      --------->HSFB2a(1)                                                 <------------CBF                     --------->HSFC1(2)                                            <---------TOE2(3)                         <---------HSFB2a(1)                                           <-----------GT1         --------->ANAC55(2)<---------HSFC1(2)                                           --------->MYB52(1)      --------->ANAC46  ------->TEIL                                         <---------MYB52(2)       <---------LBD16    <---------ARR11(1)                                         <---------ATHB12        --------->MYB52(1)  <---------ARR14(2)          <---------SPL7             ------------>CBF           ----------->HVH21    --------->ARR14(2)        <---------------AtSPL8     --------->ANAC58            <---------WOX13(1)   <---------ARR14(1) ----AHL20(2)                      --------->ANAC58           <------------CBF      <---------CCA1(2) -->AHL20(2)--------->MYB52(1)     --------->ANAC46         <---------YAB1<---------At5g28300 >CBF --------->ALFIN1   ---------->ID1--------->WOX13(1) --------->YAB1 <-----------GT1     --------   ataagggagaggggtaccggtttattcgtcgtttctcacgccaattaacgaaattgccatttgtaattgacggaattaccctcttcgaatcttctatgac  26569600                                         <-------MYC3                                         <-------MYC2                                         ------->MYC3                                        --------->TGA1a                                        --------->ANAC46                            --------->YAB1                  <---------At4g35610   --------->ANAC55(2)                  --------->ZAT2        --------->O2                  --------->At4g35610   <---------O2              --------->HSFB2a(2)       =========================bZIP_DOF         --------->ALFIN1   --------->AHL20(2)       <---------At4g35610 <---------ATHB12     <-----------RAV1(2) --------->WOX13(1)    <---------ZAT14    --------->MYB46(3)------->MYC2                                       <--------   --------->ALFIN1  --------->MYB52(1) <---------TGA1a                                   -----------  --------->ZAT18 <---------ZAT2        <---------ANAC55(2)               --------->At4g35610    <--- --->HVH21    <---------HSFB2a(2)--------->TOE2(3)    <----------DOF2     <---------At4g35610 -------   caagtgtgcaggtgttcgcgagctaaccaattaaaacttaacacgtgagcaatactcttttcttaagtgctacttcatctccagtgaaaatttcgttatt  26569700                                                                    --------->AHL20(2)                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                               <---------AHL20(2)                                                               --------->AHL20(2)                                                              --------->YAB1                                                             <---------YAB1                                                           <---------AHL20(2)                                                           -------->HAHB4                                                           -------->ATHB1                                                           --------->YAB1                                                           <--------HAHB4                                                           <---------ICU4                                                           --------->ATHB51                                                          <---------YAB1                                                          <---------ATHB51                      <----                                                        --------->YAB1            <---------AHL20(2)                                                        <---------ICU4        --------->AHL20(2)<----                                                   --------->AHL20(2)        --------->AHL20(1) -----                                               --------->AHL20(2) <---------AHL20(1)            -----  <---------TOE2(3)                            <---------AHL20(2)--------->YAB1  --------->AHL20(2) -MYB52(1)                <-----------TGA1 <---------YAB1 --------->ICU4<---------AHL20(2)   <------- >GT1     ----------->HVH21         <---------ATHB12   <---------AHL20(2)    <---------AHL20(1)<----- ------MYB46(3)          --------->YAB1  --------->YAB1<---------YAB1   --------->AHL20(2)   -------- -->MYB52(2)      --------->YAB1  --------->WOX13(1)<---------AHL20(2) --------->YAB1  <---------YAB1   tgttgatgttgtctgaccaataagaaatcgtcatttcaatcaattttgataaattttataattattaaaataattttaatatatataatatgattacata  26569800          <---------TOE2(3)         --------->YAB1       <---------YAB1 --------->REM1(1)    <---------TOE2(3) -----ARR14(2)      <---------AHL20(2)                                                   <---------AHL20(2) -----ARR11(3)     <---------YAB1                   <----------DOF2       <---------ARR11(3) ---->ARR11(3)<---------RVE1(1)              <------MYB46(1)        ----------->RAV1(1) --------->AHL20(2) ---->ARR14(2)<---------CCA1(1)              ----------->GT1   <---------MYB52(1)     --------->ARR11(3) --ANAC55(2) --------->ARR11(3)             <---------AtMYB61  --------->DOF5.7(2)    <---------ARR11(3) ----CCA1(2) <---------ARR11(3)             --------->MYB59   --------->TOE2(3) --------->AHL20(2)  < ->ANAC55(2)--------->YAB1     <---------YAB1<------MYB83     --------->TOE1(3) <---------AHL20(2)  -   tctacatctattaatgatatttttaatgaaattttgtttgtctggtttggttaactttgggaaacgttagccacaaaatcatttaaaagatttattttca  26569900            <---------ATHB12                                                                 <------ZmHOX2a(2)          --------->WOX13(1)                                                            --------->MYB52(1)         <---------AHL20(2)                                                             <---------DOF5.7(2)         --------->AHL20(2)                                                          --------->TOE1(3)        --------->AHL20(2)                                                           --------->TOE2(3)     <---------AHL20(2)                                                           ------>MYB46(1)    --------->AHL20(2)                                 <-----------GT1            ------>MYB83 --------->YAB1                            --------->At4g35610                    -------->P <------- ----------->GT1                      <---------ZAT6  <---------AHL20(2)      ------>NtERF2------->GAMYB ---------YAB1                 --------->LBD16        --------->AHL20(2)   --------->At4g35610 ---------->GT1              <---------LBD16--------->TOE1(3)              <---------At4g35610-------   aaatgataaaattaatcaattgagagacaattccggtttagtattagcttaaaaatttaaacatttgggtctggttttgctgccaacccttaacgatcat  26570000  Previous    Next  AGI:  At1g70490.1    Description:  ATARFA1D; GTP binding / phospholipase activator/ protein binding. Identical to ADP-ribosylation factor 2 (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Brassica napus] (GB:ABY76246.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; Range:  from: 26567587    to: 26569473    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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