Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------>ZmHOX2a(1)                                      <---------WRKY12                ------>ZmHOX2a(2)                                      <---------WRKY38(1)            <------ZmHOX2a(2)                                      --------->ZAT14               <---------ARR11(3)                              <---------ANAC46                      --------->ARR11(3)                              <---------ANAC58                      <---------GLK1(2)                              <---------ANAC58                      <---------ARR14(2)               <---------ARR11(3)     <---------ZAT18               --------->ARR14(2)         --------->TOE2(3)--------->At4g35610       --------------->AtSPL8    <---------AHL20(2)    <---------At4g35610      <---------ANAC46 --------->AGP1     <---------ALFIN1   gactatttcattctcaatatcaactaagagctgcttgcagtccacgattagcttcttgtactctaatacagatccttcaagagcctcttccacttgctgc  26536700                   <----------DOF2                   <---------DAG2                ------>NtERF2                              --------->MYB52(1)          --------->ARR14(2)                            <------MYB46(1)                     <--------          <---------ARR14(2)                            <------MYB83                        ---------          <-----------ARR10                            <---------TOE2(2)                    <--------          <---------ARR11(3)                    <------ZmHOX2a(2)                           ---------          --------->ARR11(3)         --------->ZAT6    <---------TOE1(2)   <-----------HVH21---------         <---------GLK1(1)    <----------DOF2  --------->ARR11(3)   --------->AHL20(2)      <--------         <---------CCA1(2)---------->ID1       <---------ARR11(3)   <---------AHL20(2)     <---------CCA1(2)   attatatcagcatatctccgacttttttgtagctttgaaacactatcgagatcatcgtaggtaagggtatttaattctgtcatgtccataccaatatctt  26536800      <---------ANAC58      <---------ANAC46      <---------ANAC58<------ZmHOX2a(2) -ARR11(3)           --------->ARR14(2) >ARR14(3)           <---------ARR14(2)                    ---------->DOF2 -ARR14(3)           --------->AGP1                       --------->AtMYB61             ------->GAMYB >ARR11(3)      --------->MYB52(1)               --------->ANAC58         <---------AHL20(2) >ARR14(2) ----------->RAV1(1)   <---------AHL20(2)   --------->DEAR3(1)  --------->AHL20(2)--------- -ARR14(2)--------->REM1(1)   ------->TEIL       --------->ANAC58     <------ZmHOX2a(1)----------->GT1   caagagttgcctacaacaaaacagatccaacgtatttagtttgcaagtttcaagcacagaccaaagcagagaggatttaaacaaatacaacgaaaaaagg  26536900               --------->ARR11(3)              <---------ICU4       --------->ARR11(3) --------->ANAC58              --------->ATHB51                <<<<<<<<<<<<<<<<<LFY --------->ANAC58   --------->ANAC46      <---------TOE2(3)   --------->ANAC58                     <- ->DOF2<---------ARR11(3)     <---------YAB1     ------->TEIL --------->ANAC58                  -----   aagaagcaatatctaattatctccgaaaccctataattgaaattgacgatgaaacttaagagtcaagacaatggcatatcaaaacaactggtgaagaaac  26537000                                           <---------TOE2(3)           --------->AHL20(2)         ----------->GT1                                       <--------      <---------YAB1                  <------MYB46(1)                        --------->ANAC58     <---------TOE2(3)                <------MYB83          --------->HSFC1(2)        <---------ZAT14 --------YAB1                        --------->MYB59        <---------HSFC1(2)   ---------->DOF2 ---->TOE1(2)                    --------->ALFIN1     <---------At5g28300    --------->ANAC58   tacgattaatgaatgaaatagacaacttcagagaggtgtttggttaatgaaacgcttaccgtagcttcttcaatttggaacgcaaaagtttagtgattct  26537100                                                    --------->ARR11(3)                   ------------                                    --------->SPL7  <---------AHL20(2)           <---------YAB1                                   <---------MYB52(1)                           ------------>CBF                                  <---------SPL7    <---------AHL20(1)        <---------ATHB12                           <---------ICU4           --------->AHL20(1)    ------------>CBF           <---------AHL20(2) <---------ICU4  --------->TOE2(3)           <------NtERF2  ------------    <<<<<<<<<MYB1         <---------ATHB12 --------->ARR14(2)          --------->RAP2.6(3)    <<<<<<<<<MYB2         --------->ICU4  <---------GLK1(1)        <---------ATHB12<------------CBF    <---------MYB52(1) *TSS--------->YAB1 --------->GLK1(1)    ------------>CBF--------->YAB1      -- -GLK1(2) --------->AHL20(2) <---------YAB1<---------ARR14(2)----------->GT1--------->WOX13(1)  <----   cttgcagttagattaaatggaaatagaaatcatcatcgttcggcaaatccctaatatatagagaagtcaataagtcggcaatcacaattgggccaattta  26537200         <---------ANAC58         <---------ANAC46                         <---------TOE2(3)         <---------ANAC58                      <---------MYB52(1)        ---------->ID1                      --------------->AGL15               <---------HSFC1(1)    <----------DOF2                        ==========================================================    <---------DAG2                         <-----------------AG                 <---------HSFB2a(2)  <---------PCF2                           <-----------------AGL1               --------->HSFB2a(2) ----------->TCP11(1)                      ----------------->AGL1   <---------YAB1 ----->AGL1                             --------->ARR14(2)     --------->At4g35610 >CBF<----------DOF2                    <---------ARR14(2)<---------CCA1(2)     --------->HSFC1(1) ------->ALFIN1 <-----------GT1  --------->At4g35610    --------->YAB1     <---------DAG2        <--- -----TOE2(3)  <---------AHL20(2)<---------At4g35610<------ZmHOX2a(1)      <----------DOF2     <-----   ggtgggccttttcgtatttaacttggtaaatgggcctctgcaaattcccgtttaggaatcatatcatcttactattacttttctagaaatattctattta  26537300                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                              <------                                                                                              <------         <----------DOF2                                                                      <------       --------------->AGL15                                                                  -------       <---------------AGL15   <---------YAB1                                                 <------       ==================================MADS_MADS     <---------HSFB2a(1)                    -------    <-----------GT1      --------------->AGL15         --------->HSFB2a(1)               --------->AHL20(2) <---------ICU4         --------->ANAC55(2)      ---------->DOF2                      --------->DAG2 --------->YAB1      <---------MYB52(1)         <---------AHL20(2)                   ---------->DOF2 ======================MADS_MADS            --------->AHL20(2)                  ----------->GT1  <--- ------YAB1         <----------DOF2         <---------AHL20(2)             --------->AHL20(2)-------- ------GT1     <---------GLK1(1)       <-------TEIL----------->GT1      <----------DOF2----------->GT1   caatagttactcttttgagttcctttacttattttgataaatacatttatataaagaaaattctaaatcaactacttttaaatagcaaaaagttaataat  26537400      ----------->RAV1(1) -------AHL20(2) ----->AHL20(2) ------AHL20(1) ---AHL20(1) ---ICU4 --ATHB1 ----------->RAV1(1)                                                           --------->REM1(2) -->AHL20(2)                                                                        <---------ANAC46 ---AHL20(2)                                               <---------HSFB2a(2)   <-----------GT1 -->YAB1--------->REM1(1)                                  >>>>>>>ZML2         --------->YAB1 ------AHL20(2)  ---------->DOF2                      <---------ANAC58        <---------YAB1 ->ICU4 --------->MYB46(3)   --------->TOE2(3)        <---------ANAC58        <---------ATHB12      -   tttttttgcaacaacaaaaaaaagaagctaatctaaaacgaatagtcactacaatttcgttctaggtaatagatgggacaatgataccgtatagaagttt  26537500                 --------->YAB1                 -------->HAHB4                --------->ICU4                <---------YAB1                                                                      -           --------->YAB1                                                  ---------->DOF2          <       <---------AHL20(2)                                             <---------HSFB2a(2)           <      --------->AHL20(2)                                             <---------LBD16                -      <---------AHL20(2)                                  <-------TEIL--------->HSFB2a(2)           <      <---------AHL20(1)   <----------DOF2          --------->YAB1 --------->GLK1(2)       ---------- -------->ANAC55(2)<---------YAB1             <-----------GT1    <---------AHL20(2)---------->DOF2 <-   ttatgtaataaaattgtaatgatcaatggcttcaatgccaagaagttttaacaattaacatacacatataatctggaaaaagagagaaagaaggaaagtt  26537600  Previous    Next  AGI:  At1g70400.1    Description:  similar to EMB1220 (EMBRYO DEFECTIVE 1220) [Arabidopsis thaliana] (TAIR:AT1G60170.1); similar to Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] (GB:ABN06098.1); contains InterPro domain NOSIC (InterPro:IPR012976) Range:  from: 26536084    to: 26537123    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g70410.1    Description:  carbonic anhydrase, putative / carbonate dehydratase, putative. similar to carbonic anhydrase, putative / carbonate dehydratase, putative [Arabidopsis thaliana] (TAIR:AT1G23730.1); similar to unknown [Populus trichocarpa] (GB:ABK94740.1); contains InterPro domain Carbonic anhydrase, prokaryotic-like, conserved site; (InterPro:IPR015892); contains InterPro domain Carbonic anhydrase; (InterPro:IPR001765) Range:  from: 26537589    to: 26540334    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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