Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------NtERF2                                               --------->ZAT14           ------>NtERF2                                            <---------GLK1(1)           <---------DEAR3(1)                                            --------->GLK1(1)         <-----------HVH21                                           --------->ARR14(2)        <---------ANAC46    <---------ARR14(2)                                         --------->LBD16             <---------ANAC58    --------->ARR14(2)                                     <---------ALFIN1        --------->ZAT2         --------->LBD16                           <---------ALFIN1<---------ARR14(2)--------->At4g35610   --------->ANAC46                    --------->HSFC1(2)--------->MYB52(1)     <---------At4g35610  <---------LBD16                    <---------HSFC1(2)------>NtERF2          <---------ZAT2   <---------ARR14(2) -------->ARR11(3)  <---------HSFB2a(1)<------NtERF2      --------->LBD16<---------DEAR3(2) ---------ARR11(3)  --------->HSFB2a(1)<---------LBD16   --------->HSFB2a(2)  --------->ARR14(2) -------->GLK1(2)  ------->TEIL    ------>NtERF2<---------ALFIN1     <---------ANAC58    --------->GLK1(2) --------GLK1(2)--------->ANAC46   <-----------HVH21     <---------HSFB2a(2) --------->GLK1(1) <-----   aaaatctctaacaagactacgaagcttctccactctctgccaccggaactccactcgttcccgagctgattccgtcggcaaatccacggagaattcggtt  26397500                                                               <---------ZAT2                                                               --------->ZAT2                                                               --------->HSFC1(2)                                                               <---------HSFB2a(1)                                                               --------->At4g35610                                                               <---------At4g35610                                                        <-----------HVH21                                                    --------->ARR14(2)   --------->YAB1                                                    <---------ARR14(2)   <---------ICU4                                                 <---------ANAC46       --------->ICU4                                                 <---------ANAC58   <-----------TGA1              <-----------HVH21                  <---------ANAC58 <-------TEIL            <------NtERF2                 --------->ARR11(3)<---------At4g35610          <---------DEAR3(1)              <---------ARR14(2)--------->At4g35610                 <<<<<         <------NtERF2<----------DOF2     <---------ARR11(3)<---------ZAT2                   <<<<<<<<       <---------DEAR3(1)   --------->LBD16     ---------->ID1 <---------HSFC1(2)   ---------->ID1 << ----MYB52(1) <-----------TGA1      <---------At4g35610 <-----------TGA1<---------YAB1    <<<<<<<<<TBF1   tcttcatcgtcgtcgtcgtcatcgctattccgaatttcatcggagatattgtcgtattcgtcagcagcttcgtcatcatcatcttcgtcttcttcttctt  26397600                                                                             <---------ANAC46                                                                           <---------MYB46(3)                        <---------At4g35610                               <---------AtMYB61         <                        --------->At4g35610           <---------TOE2(3)   --------->ALFIN1          <                        --------->ZAT2           --------->GLK1(2)     <---------AtMYB61        -----     ---------->ID1     <---------ZAT2    ---------->DOF2           <------ZmHOX2a(1)           <---- <<<<TBF1              <---------AGP1  --------->At5g28300  --------->ARR14(2)             --------->MYB52(1) <TBF1            --------->TOE1(1)   ----------->GT1 <---------TOE1(3)--------->ALFIN1 <------ZmHOX2a(1) <<<<<<<TBF1     ------>ZmHOX2a(1)   <---------DEAR3(1)     <---------ARR14(2)        <---------TOE2(3)   cttcttcgtcgtcttcttcctcgtagagctgagactgagacggtgaaagagaatttaaggtggatttgaaggagaggtggtttggattgaggataaggga  26397700       <------ZmHOX2a(1)                                                                 ----------->HVH21  <---------REM1(1)                   --------->ZAT14                          <-----------HVH21 ------MYB83                          <---------ZAT14                       --------->ZAT2 ------MYB46(1)                      --------->ALFIN1                      --------->GLK1(2)<-------- ---->ARR14(2)                   <---------------------WRI1            >>>>>>>>>TBF1   --------->CCA1(2) -----ARR14(2)  <---------LBD16 --------->MYB52(1)         --------->GLK1(2)--------->At4g35610   tttggtgaaggagaagtttggggaatgagagagagaacggtgcagagaaggaaaatggaagaatttgaaggaagaagaagctgtgagagagacgacggga  26397800                                                                         <---------AHL20(2)                                                                     -------->HAHB4                                                                     <--------HAHB4                                                                     --------->YAB1                                                                     --------->ATHB51                                                                     <---------AHL20(2)                                                                     -------->ATHB1                                                                     <---------ICU4                                                                    <---------YAB1                                                                    --------->ICU4                                                                    <---------ATHB51                                                                 <---------AHL20(2)                                                                 --------->AHL20(1)                                                           --------->ANAC46                                                           *TSS  <---------AHL20(1)             <----                                            <---------ANAC58     --------->AHL20(2)          <-------                                            <---------ANAC58    <---------ATHB12             --------                            --------->CCA1(2)              --------->ANAC58                  <-------                           --------->ARR14(2)              --------->ANAC58                  -------- <---------ZAT6            <---------ARR11(3)<----------DOF2------------>CBF      --------->At4g35610 -ANAC46         <---------ZAT18   <---------AHL20(2)  <-----------GT1 <---------YAB1      ------->TEIL   agagtgttcatgttttcagggcatttcaagatttgatttttttttggcttttggatattacacccaattaattattattttctcagataaatgaatattt  26397900                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          --------->AHL20(2)                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                <---------ANAC46                                                                <---------ANAC58                                                                --------->ANAC55(2)                                            <-----------GT1     <---------ANAC58       ----------->GT1                   <------------CBF       <---------ANAC55(2) -----AHL20(2)                          ------>ZmHOX2a(1)      --------------->AtSPL3 --ARR11(3)                      --------->DAG2         <-----------HVH21 --------->AHL20(1) ->AHL20(1)                  --------->ANAC46          --------->bZIP60(1)<---------AHL20(2) --AHL20(1)       <---------GLK1(2)    <---------YAB1  <---------bZIP60(1)<---------AHL20(1)        < ->ARR11(3)  --------->MYB52(1) ---------->DOF2    <----------DOF2 <-------TEIL                ------   ttttgtctgatgtaaaaacggattattttctacgaaaagttcctattgacccgcttgatgtcacttacgtacacaatatatttcgaagaatgcccgtttt  26398000                                    --------->AHL20(1)                                        -------                                  <---------TOE2(3)                                   --------->At4g35610                                --------->AHL20(2)                                    <---------ZAT14                                <---------AHL20(2)                        <---------ICU4      -------          --------->MYB52(1)   --------->AHL20(2)                        <---------AHL20(2) ---------      <-----------GT1       --------->AHL20(2)                        ----------->GT1 --------->ZAT14 <---------YAB1             <---------AHL20(2)                   --------->AHL20(2)<---------At4g35610 <---------AHL20(2)         --------->ICU4   <-----------GT1     <---------AHL20(2)--------->At4g35610 ---------AHL20(1)     ----------->GT1 <---------AHL20(2)     --------->AHL20(2)  <---------ARR14(2)- --->AHL20(2)        ---------->DOF2<---------AHL20(1)        --------->YAB1      --------->ARR14(2)<   aatattattaactaagcgaataacaaagaaaaaattaatattttttttttcttatcggtgctaataaaaaaatagataattgcacatctgcagagaaagc  26398100                <---------ZAT6          <---------YAB1   --------->MYB52(2)           <-----------GT1 -->ANAC58  <---------YAB1            ----------->GT1  <---------MYB52(1)            <---------YAB1 -->ANAC58--------------->AGL15     <---------GLK1(2)<---------ZAT6              <----------DOF2 ->DOF2   <---------------AGL15--------->YAB1       <---------YAB1            --------->ANAC58 -------->ARR14(2)       <---------ANAC55(2)     <---------YAB1           --------->YAB1 --------->ICU4 ---------ARR14(2)       --------->ANAC55(2)<---------LBD16   <---------YAB1  --------->ANAC58 ------   caaatcccactactataagtgttaactacgtattcatagattgttattcggattattgttagttttgatagtctaatgacaagctttattactgattaaa  26398200                                                                                 --------->CCA1(2)                                                                                <---------ARR14(2)                                                                             <---------ANAC46                                                                            <------NtERF2                                                                            <---------At4g35610                                                                            --------->At4g35610                                                                            <---------LBD16                                                                           <---------ERF1                                                                         --------->ZAT2                                                                         <---------ZAT2                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                         --------->ATERF1(1)                                                                        <---------RAP2.3(1)                                                                       <---------ANAC46                                 ---------->DOF2                       <---------RAP2.3(2)                          --------->ANAC58                             <---------RAP2.6(2)                        ------->GAMYB                                  <---------ANAC58                       --------->MYB46(3)                              <---------RRTF1(2)                      <---------------------WRI1                       <---------ANAC58                      --------->ANAC58                                <---------LBD16                      --------->ANAC58                               --------->ALFIN1                     ------->GAMYB                                  =================================                    --------->MYB46(3)                              <--------P--------->LBD16                    <---------MYB111(1)                            <-------GAMYB--------->ARR14(2)                    <---------MYB111(2)                            ==================================                    <---------MYB55(2)                             <---------ANAC58         <--------         --------->ANAC46 --------->ANAC58                         <---------ANAC58         <-------- ---->DOF2        --------->MYB52(1)                        <---------YAB1<---------DEAR3(1)<--------   agatggttttcaagacagactaacaaccaagaaaacaaagacaacttaaactgaaacaacttatttttgggttgcggctgcggatacaaatttggcttgg  26398300     <-------MYC3     ------->MYC3    <---------TGA1a    --------->ANAC46    --------->TGA1a    =====================================bZIP_DOF    --------->ANAC55(2)    <---------ANAC55(2)    <---------O2    --------->O2                                                                                ----- =============MYC_MYB                                                                        <------- =============MYC_MYB                                     ----------->GT1   ------>ZmHOX2a(2)-------- -ANAC46                                             ---------->DOF2      <---------ARR11(3)<-------- -ANAC58                                    <------ZmHOX2a(2)    <---------AHL20(2)       <---------AtMYB61 -ANAC58  ------>ZmHOX2a(2)   ---------->DOF2     --------->AtLEC2        --------->ARR11(3)---------   ccattcacgtgatcccaaactctgaagactcttaaagagtgatgagatcgacatacaaagaggtgatataatctttgatcttctctccagcgaaggtgta  26398400  Previous    Next  AGI:  At1g70070.1    Description:  EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent helicase/ RNA helicase. similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G46960.1); similar to hypothetical protein OsJ_008038 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24555.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40975.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59065.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro do Range:  from: 26393679    to: 26397859    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g70080.1    Description:  terpene synthase/cyclase family protein. similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G14520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68620.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpenoid synthase (InterPro:IPR008949); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) Range:  from: 26398332    to: 26401228    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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