Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <------ZmHOX2a(2)                                                                    --------->ARR11(3)                                                                    <---------ARR11(3) <-----------HVH21                                              ---------->DOF2 -------->ANAC46                   <---------ANAC58    <---------ARR14(2)               <---------ANAC58 ----->GLK1(2)                     <---------ANAC58    <-----------ARR10                <---------ANAC58 ------ARR14(2)                 <----------DOF2        --------->GLK1(2)             <----------DOF2- ----->ARR14(2)      --------->MYB52(2)                --------->ARR14(2)      <----------DOF2      < ->GT1     <----------DOF2 --------->HSFB2a(2)        <---------GLK1(2)  <---------ALFIN1 ---------->ID1   atccgtcgcgatgcttttttagttcgtttcgagactttcttgaacatgcttctcaagaatctgatcaaaagatcgacactgctttctctttcgtcttctt  26346400                                                         --------->DEAR3(1)                                                       --------->ABI4(1)                                                      --------->DEAR3(1)                                                      --------->DREB2C(2)                --------->ANAC58                                                      ------->GAMYB                      --------->ANAC58                                                     --------->MYB46(3)                  --------->ANAC46                            <---------HSFB2a(2)     --------->ABI4(1)                 --------->DEAR3(1)                            --------->HSFB2a(2)    --------->AtMYB61             <---------ARR14(2)                           <---------LBD16         <---------ALFIN1              --------->ARR14(2)                      <-----------HVH21            --------->DEAR3(1)         <---------ANAC58   <---------ICU4     <-----------TGA1            --------->MYB46(3)          --------->ANAC55(2)  --  <---------YAB1     <---------ETT(2)           <-----------GT1               <---------ANAC58     <- -------->YAB1 <---------ARR14(2)             <-----------HVH21--------->GLK1(2)<---------CCA1(2)<--- ---------ICU4 --------->ARR14(2)        <---------YAB1------>NtERF2          <---------ANAC55(2)<---   catcatcatcgtcgctaaatccgtcgtcatcgggaacaacatcgtaattgtcaccaccgccgaagaatctatcgtctgattcgtatcgcctacgcgacta  26346500                                                                           --------->ALFIN1                                                                          --------->TOE1(2)                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                         --------->TGA1a                                                                         <---------TGA1a                                                                        ------->TEIL                                                                        --------->SPL7                                                                        <-------TEIL                                                                      --------->TOE1(2)                                       <-----------GT1                <---------SPL7  --------->ANAC46            ----------->GT1  --------->ARR14(2)                       --------->TOE2(2)  ---------->DOF2            <---------ARR14(2)                      <---------HSFB2a(1) ------->YAB1                <---------GLK1(2)                  --------->YAB1  <---------ZAT2 -----ZmHOX2a(1)       --------->ARR14(2)                  <---------ARR11(3)   --------->At4g35610 ------TOE1(3)         <---------ARR14(2)                  --------->ARR11(3) <---------PCF2 ------TOE2(3)         <---------GLK1(2)                <------ZmHOX2a(1)<---------ANAC46   aggataaagagattgagtaaattcggattcggattcggattacacaattctatgagtaggagataatcagaacgtacgtgggagctagacgaagcgagtg  26346600                       --------->ALFIN1                      <------NtERF2                      <---------LBD16                      --------->At4g35610                      --------->ATERF1(1)                      <---------At4g35610                     <---------DEAR4(2)                     <---------RRTF1(1)                     <---------RAP2.6(1)                     <---------ERF1                     <---------ATERF1(1)                     ------>NtERF2                     <---------ORA47(2)                     <---------RAP2.3(1)                    <---------RAP2.3(3)                    --------->DEAR3(1)                    --------->ATERF1(2)                    <---------RRTF1(2)                    <---------DEAR3(1)                    <---------RRTF1(3)                    <---------RAP2.6(2)                    <---------ATERF1(2)                    <---------RAP2.3(2)                   --------->ATERF1(1)                   <---------LBD16                   <---------ABI4(1)                 <---------DEAR3(1)               --------->ARR14(2)               <---------ARR14(2)              <---------ARR14(2)              --------->ARR14(2)             <------NtERF2           <---------ANAC46          <---------At4g35610          --------->ATERF1(1)          <---------LBD16<------NtERF2          <------NtERF2<---------DEAR3(1)          --------->RAP2.3(1)          --------->At4g35610         <---------ERF1<---------ANAC46         <---------ATERF1(1)         <---------RRTF1(1)         <---------ORA47(2)         ------>NtERF2<---------ABI4(1)         <---------DEAR4(2)         <---------RAP2.3(1)         <---------RAP2.6(1)        <---------DEAR3(1)        <---------DREB2C(2)        <---------RAP2.6(2)        <---------ATERF1(2)                                                       --------->YAB1        <---------RRTF1(3)                                              <-----------HVH21        <---------RAP2.3(3)                                       --------->GLK1(2)        <---------RAP2.3(2)                                       <---------ARR14(2)               <X        --------->ATERF1(2)         <---------ZAT6                --------->ARR14(2)    <---------ZAT6        <---------RRTF1(2)  <------ZmHOX2a(1)               <----------ID1       --------->ICU4  <---   agcgatttaggcggcggaatcggcggcggaggaatatagagttagaagagaagggagttacagagacaaatctgtgtgaggcattgatgagagttagcga  26346700                                    --------->RAP2.6(2)                                    ------>NtERF2                                   <---------RAP2.6(2)                                  --------->At4g35610                               <---------ZAT2                               <---------At4g35610                         <-------GAMYB                        --------->MYB111(2)                                               <---------AHL20(2)                        <---------MYB46(3)                                               <---------AHL20(2)                    --------->DAG2<---------At4g35610                                    *TSS--------                --------->YAB1 --------->ZAT2   <---------ZAT2  <-----------RAV1(2)      --------->AHL20(2)   --------->ICU4   <---------TOE2(3)           --------->At4g35610                      --------->YAB1   <---------YAB1   <---------TOE1(3)------>NtERF2           --------->ZAT6     --------->ATHB12 ---- XXXXXXXXXXXXXXXXXXXMIR414 <---------REM1(1)    <---------At4g35610 <---------YAB1 ----------->GT1  < ------AtMYB61 <---------YAB1  --------->At4g35610      ----------->GT1<---------YAB1<---------YAB1 <   tggtgatgatgaagatgatgataaggttgttgtagctgcggccatttgtgagcagagagagtaacaccagatgattattcagtgattgtaattaaaacgg  26346800           --------->AHL20(2)        <---------ICU4       <---------YAB1                                                        <---------AtMYB61       --------->ICU4                                                   <-----------GT1     --------->YAB1                                            <---------ANAC46    <---------YAB1                                             <---------ANAC58  <---------ANAC58 ------->AtSPL8          <---------ARR14(2)                    <---------ANAC58  <---------ANAC58<--- --->TEIL  <---------AHL20(2)                       --------->DAG2<---------TOE2(2)              <--- ----------DOF2          --------->ARR14(2)         <---------------AtSPL3 <----------DOF2    <------ ---------DAG2  <-------TEIL <----------DOF2      ---------->DOF2 <---------TOE1(2)----------->HVH21   acctttttgataattaaatacatttgggatacttttgtaagtatacataaacaaaaggtactgtttcgtagtttttactttggtcgtgaccgagttttac  26346900                           <---------AHL20(2)                          --------->AHL20(2)                          <---------AHL20(2)                      <---------YAB1                                --------------->AtSPL8                      --------->ICU4                       --------->TOE2(3)        ---------->DOF2<---------ICU4                    <-------TEIL ------DAG2         --------->YAB1                   --------->ANAC58              <----------DOF2 -------DOF2       <---------YAB1                    --------->ANAC58         --------->YAB1 -----GT1     <----------DOF2                      ---------->DOF2  <---------------AtSPL8      -----   ttttagacttaaaagacttttttgataattaaataaaacctcggctattttagaaaagctacataaatatagggtaccatttatacttttatttgagaga  26347000               <---------At4g35610             <---------RAP2.6(2)        <---------AHL20(2)       <---------AHL20(1)     <---------ANAC46       <---------AHL20(2)     <---------ANAC58                   <----------DOF2<-------TEIL       --------->AHL20(2)     <---------ANAC58         --------->AtMYB61 ---------->DOF2          ---       --------->AHL20(1)--------->ATHB12          --------->ETT(2)  <---------AtLEC2             --- ------>GT1 --------->RAP2.6(3)               <---------GLK1(2) --------->MYB52(2)       ----------->GT1   gaaaatcaatttatttcggctaagtctcgattgcttatatgtttctcagattatcgacctctcggttctttgcataaaagcatacatagggtcgtaagta  26347100                                                   <---------AHL20(2)                                                  <---------AHL20(1)                                                  --------->AHL20(2)                                                  <---------AHL20(2)                                               --------->AHL20(2)                            --------->DAG2    --------->AHL20(2)          ---------->DOF2  ---------->DOF2    <---------AHL20(2) -------->TGA1   --------->DAG2             --------->YAB1  ---------->DOF2 -------->HVH21 ---------->DOF2       ----------->GT1  ----------->GT1            <---------YAB1   gtgacgactaggtaaagaaaaagtttgctaaaagtgatatatgtaaaaataatttttttgttaaaagtgatatatgtgcaaaatatgattttagacttga  26347200                              --------->ANAC58                        <---------MYB46(3)                       <---------ANAC46                       --------->ALFIN1                     <------MYB46(1)                     <---------MYB46(3)                     --------->MYB55(2)    --------->TOE1(2)                    <----------DOF2                     <------MYB83  --------->O2                            <---------At4g35610    <--                    --------->MYB55(2)    ==============================HOX2a_HOX2a               <--                    --------->ALFIN1      ------>ZmHOX2a(2)               --------->MYB52(2)  <------                    <---------DEAR3(1)   <------ZmHOX2a(2)              <---------MYB52(1)    <------                    <---------AtMYB61    ===============================HOX2a_HOX2a           <------                   <---------ABI4(1)    --------->ARR14(2)         ------------>MYB.PH3(1)  ---------                 <---------MYB46(3)<---------O2                    --------->MYB52(1)       <--------            ---------->DOF2   --------->ANAC58   <---------REM1(1)<---------ARR14(2)    <<<<<<<<<WRKY18    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ARR14(2)       <------ZmHOX2a(1)  ---------->ID1<--   tattgaagagtttacaaagcgggtggtgggagaagccacttggatccttggatgtagccgagggataggaaacggttagcttctttgtcgtcaatgtctt  26347300  Previous    Next  AGI:  At1g69935.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40987.1) Range:  from: 26345464    to: 26346789    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g69940.1    Description:  ATPPME1; pectinesterase. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G07410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62286.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66682.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 26347032    to: 26348721    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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