Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----           <------ZmHOX2a(2)                                                                     <---         <------ZmHOX2a(1)                                                                       <--- --------->ARR11(3)                                                                         <-------- --------TOE1(3)                                                                           --------->AHL20(2) --------TOE2(3)          <----------DOF2                                                --------->ARR11(3) --------YAB1            <---------ANAC58           <---------AHL20(2)           ----------->GT1<---- --->ANAC55(2)           <---------ANAC58           --------->AHL20(2)         ---------->DOF2  ----- ----ANAC55(2)---------->DOF2                 ----------->GT1           <---------YAB1   <---------ARR11(3) >GT1<---------YAB1<-------TEIL        <---------------AGL15        <---------ICU4   ---------->DOF2   taagattatgaggatcaaaagtccatagcttttctaaacatccaaaaaatgtaataaaactagagattaatcttttcattagaaagttaaagatttattt  26273300        <---------AHL20(2)      <---------AHL20(2)      <---------YAB1     <---------AHL20(1)   <---------YAB1   <---------TOE2(3) --------->AHL20(2) <---------AHL20(2)                                            <---------ARR11(3) ----->AHL20(2)                                                --------->ARR11(3) ------YAB1                                                   --------->YAB1 ------AHL20(2)                                 <---------AHL20(2)                         ---------- -AHL20(2)                                     --------->AHL20(2)                         --------->DAG2 -----AHL20(2)                               <----------DOF2<---------TOE2(3)            ---------->DOF2 ---->AHL20(2)                       ------->TEIL          ---------->DOF2     <-----------GT1   <---   taattaatattattttgtttcatgtttataaacaaaatgtatgtgtgctttaaattgagtttaaagataatacaatcgtttatacaaactaaaaagtata  26273400           ------>ZmHOX2a(1)        <------ZmHOX2a(2)                                                    --------->MYB46(3)       <---------ARR14(2)                                        <------ZmHOX2a(2)   --------->TOE2(3)                                             <---------ATHB12 ->GT1 --------->ARR14(2) ----------->GT1                <----------DOF2   <-----------GT1 --------GT1       ----------->GT1                      <---------ICU4 <-----------GT1   tacaacctcgatcctcttaacctgtaatttgttaatttgagttgttttgtgattttcatcttttccgatcatttttctaaccattccgatgttagagcga  26273500                                             --------->YAB1                                             --------->AHL20(2)                                             <---------AHL20(2)                                          <--------ATHB1                                          -------->HAHB4                                          <---------ICU4                                          --------->YAB1                                          <--------HAHB4                                         --------->AHL20(2)                                       --------->YAB1                                      --------->AHL20(2)                                      <---------AHL20(2)                                     --------->AHL20(2)                         ------>ZmHOX2a(2)--------->ATHB51           <---------ATHB12      --------->YAB1      ---------->DOF2       <------ZmHOX2a(2) ----------->GT1 <---------YAB1                            <------MYB46(1)  -       <---------ATHB12<---------ARR14(2)--------->ICU4     ----------->GT1        <------MYB83------ <-----------GT1       --------->ARR14(2)<---------ATHB51 ---------->DOF2         --------->MYB111(1)   atttttccgatcactcatttttgtggatcgtttaatcaaattaataattaaaacaaaaagaaaagtatattcaaaacaatatagttggtagtagagagag  26273600                                                        --------->ANAC46                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <XXXXXXXXXXXXXXXXXXXXMIR395A/D/E                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <---------ARR14(2)                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   --------->ARR14(2)                                       ----------->HVH21--------->LBD16     <-----------GT1                                     ------>MYB83 <---------GLK1(1)         --------->MYB52(1)       <---------YAB1   <---------ANAC58     <---------LBD16     --------->ZAT14     <---------ANAC58     <-----------GT1    <---------ANAC58  <---------bZIP60(1)    <---------ZAT14     <---------ANAC58 --------->DAG2         <---------ANAC46  --------->bZIP60(1)<---------ALFIN1    <---------MYB52(1) --------->DOF2   <-------TEIL       ------>MYB46(1)<XXXXXXXXXXXXXXXXXXXXMIR395B/C/F<---------At4g35610 ----->GT1   <-----------GT1 --------->bZIP60(1)  --------->GLK1(1)<---------ANAC46 --------->At4g35610   tataaagttaccattttacatacatggcttggcatcaccaaatgacatcgggagttcccccaaacacttcagtggaattaactgttagcttactgaataa  26273700                                                           <---------REM1(1)                                                           <---------MYB46(3)                                                        <-----------RAV1(1)                                                    <------------CBF                    <------ZmHOX2a(1)              --------->ATHB51                   --------->LBD16              -------->ATHB1                 <---------LBD16                <---------ICU4                                     --                 <-----------RAV1(2)            <--------HAHB4         --------->MYB46(3)   <--------             <---------ZAT6              *TSS   --------->ATHB51      <---------At5g28300   <--------           XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E     --------->YAB1       <-----------GT1   <---------ICU4           XXXXXXXXXXXXXXXXXXXX>MIR395B/C/F    --------->ICU4   <---------ANAC58       <---------AHL20(2)        <---------ATHB12         <------ZmHOX2a(1)<---------YAB1<---------ANAC58------->TEIL<--------   caaatttccaatgaagtgttcaggagaactctagaggacatctagtcgaattattattgtgttgttgctagttaccaccatgaacataaatatttcttgt  26273800                              ======================HOX2a_HOX2a                              ==============================HOX2a_HOX2a                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                             =======================HOX2a_HOX2a                             ===============================HOX2a_HOX2a                            <---------ARR11(3)                            --------->ARR11(3)             ----------->HVH21                            <---------AGP1               ----------->GT1                       =====================================HOX2a_HOX2a                       =============================HOX2a_HOX2a                      ==============================HOX2a_HOX2a                      <------ZmHOX2a(2)                  <---------ANAC58                     <---------ARR14(3)                  <---------ANAC58                     --------->ARR11(3)                 <---------MYB46(3)                     <---------ARR11(3)              <------ZmHOX2a(1)                             -- --------->GT1       --------->ARR14(3)           --------->CCA1(2)                                <- -ANAC46   <------MYB83------>ZmHOX2a(2)         <---------ARR14(2)                       --------->GLK1(2) -ANAC58   <------MYB46(1)  --------->AGP1 <---------TOE2(3)           <---------AHL20(2)<---------GLK1(2) -ANAC58  --------->MYB59  <---------CCA1(2) <------ZmHOX2a(1)     <---------YAB1    ---------->DOF2   atggttagaatgtaggtatataagatcttagatctatttttgtttgaggaagataggatgggtgacattctaatttatagcgagaactaaagaatctcat  26273900        --------->ALFIN1       <-----------HVH21      <---------ZAT6                                                <---------------AtSPL3    --------->MYB52(2)                                              <---------ICU4  <---------MYB52(1)               --------->DOF5.7(2)              --------------->AtSPL8      ----- --------->TOE2(3)               <---------ANAC46                   <---------------AtSPL8      ----- ----->TEIL                ----------->RAV1(2)          ----------->HVH21                       <---- ------TEIL               ------->TEIL                ----------->GT1        <----------DOF2 <-------   gtacgttagtgtgaggggagagtgtttgaacctggacgtgaacttgggtttaagagttgtgacaagagaattagtacttcttttccttctgtctcttcac  26274000                                                           ------->TEIL                                                           --------->GLK1(2)                                                           <---------ARR11(1)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                     <------MYB83                                                     <---------MYB46(3)                                                     <------MYB46(1)                                                    <---------AtMYB61                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                            <---------GLK1(1)                                            --------->GLK1(1)                                           <---------ARR14(3)                              <-------TEIL --------->ARR14(3)                              ------->TEIL --------->ARR14(2)                  <---------YAB1                           <---------ANAC55(2) <---------LBD16      <------MYB83            <--------  ----------->GT1         --------------->AtSPL3    --------->ALFIN1<------MYB46(1)        --------->AHL20(2) ---->O2                  <-------TEIL     --------->ARR11(3)       ----------->GT1 <---------WRKY12 ---->ANAC46            --------->TOE1(2)  <---------ARR14(2)     <---------WOX13(1)<---------WRKY38(1) -----O2                --------->TOE2(2)  <---------ARR11(3)   --------->ATHB12 --------->WOX13(1) --REM1(2)        --------->ANAC46         <---------AGP1 <---------ARR14(1)<---------AHL20(2)  -----   gagacagaaaatttgattctacaaaacatacgtacatctatacaagatctctgggtggtcgaatctagattggtttatattatcagtcaactattaaatg  26274100                              <---------ZAT6                          <---------YAB1                        --------->ATHB12                                   <---------YAB1                        <---------ICU4                                     --------->GLK1(2)                       <---------YAB1        <-------TEIL               <---------ARR14(2)                       --------->ICU4--------->AHL20(1)                 --------->ARR14(2)     <-------TEIL   <---------YAB1   <---------AHL20(1)                 <---------ARR11(3) -AHL20(2)     --------->MYB52(2)    <---------AHL20(2)                 --------->ARR11(3) ---->ATHB12 <---------MYB52(1)      --------->ARR11(3)               ----------->ARR10   agtggcatacataccattagttgtgattattagtgctaatatatagtttcatcaggtcgaaaccacatcaagtagatattcttgtgagtaatccacattc  26274200  Previous    Next  AGI:  At1g69792.1    Description:  MIR395D; miRNA Range:  from: 26273642    to: 26273741    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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