Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ANAC55(2)                                                  <------ZmHOX2a(1)           --------->ANAC46                                                 ---------->DOF2           --------->ANAC58                                                 --------->MYB52(1)      -           --------->ANAC58                 ---------->DOF2           --------->ANAC58--------->ANAC58 --->ANAC55(2)                         ---------->DOF2                --------->ANAC58--------->ANAC46 ----GT1 <-----------GT1        <---------ATHB12                  --------->ANAC46    --------->ANAC58   taatcaactatttacgaaacaaaaaacatttctaatcaaacaaaagtaaagcctctcaatctgactatacacaagaaccaaaggattcaaggaacttact  26256800                                                                                     <-----------ARR10                                                                                ----------->RAV1(1)                                                                           <------ZmHOX2a(2)                                                                           --------->CCA1(2)                                                                          --------->AGP1                                                                          --------->ARR11(3)                                                                          <---------AGP1                                 ----------->RAV1(2)                 --------->MYB52(1)    <---------At4g35610                                ------->TEIL                     --------->GLK1(1)--------->MYB46(3)                            --------------->AtSPL3         ========================HOX2a_HOX2a                            --------------->AtSPL8         =======================HOX2a_HOX2a        <---------ANAC58   <------NtERF2                   ------>ZmHOX2a(1)------>ZmHOX2a(2)        <---------ANAC58  <---------MYB46(3)           <---------ARR11(3) <---------ARR11(3)     <----------DOF2     --------->ALFIN1              --------->ARR11(3) <---------ARR14(2) --------->ID1        <---------AtMYB61               --------->RVE1(1)   --------->ARR14(2)   tcgtcttctttcttgacgaagccttaggtggctgtacctgaaacaaaacaaacaaaaaatccttcagaaatcaacagatctgcaacaaatctcagcaaat  26256900                                                                                        <-----------RAV1(2)                                                                             --------->ARR14(2)                                                                             ------->TEIL        <---------MYB59                                                      <---------ARR14(2)        ------>ZmHOX2a(2)                                      --------->TOE2(3)     --------->ANAC58       <------ZmHOX2a(2)                                       --------->TOE1(3) <-----------HVH21      <---------AGP1                        --------->ARR14(2)<-----------------AG   --------->ANAC58      --------->AGP1          --------->ANAC58                ----------------->AG<---------MYB52(1)      <---------ARR11(3)      --------->ANAC58                ----------------->AGL1>>>>>>>GRF7      --------->ARR11(3)      --------->ANAC46              <-----------GT1 <---------CCA1(2)   ttcaactagatctaactatttcatacacaaacacccaaaattccagtttccgatgtatgaaattacctcaatcggtttgtatctgtcaggccaggtactc  26257000                    <---------ANAC58                                      <---------ARR14(2)                    <---------ANAC58                                   --------->DEAR3(1)    <-------           --------->HSFB2a(2)                   <-----------GT1      <---------LBD16        <-------           <---------HSFB2a(2)     --------->ANAC46                   <---------At4g35610    --------          <---------LBD16          --------->ANAC58               <-----------HVH21   --------->DEAR3(1)        --------->GLK1(2)          --------->ANAC58      ------>ZmHOX2a(1)--------->ARR14(2) --------       <---------GLK1(2)  <---------HSFB2a(2)   ---------->ID1--------->AtMYB61     <---------At5g28300       <---------ARR14(2) --------->HSFC1(1) <---------DAG2   <---------ALFIN1     <-----------GT1       --------->ARR14(2) --------->HSFB2a(2)<----------DOF2 --------->MYB46(3) <----------DOF2<-----   ttcgcttcagattctggaattggctcgtctagaaacctcgcaacatgcttttccccttcctcgaccactgtcaccggctcttctttcaccgtcttagctc  26257100                                                                                     <-----------HVH21                                                                                 <---------WOX13(1)                                                                               --------->ATHB12                                                                              <---------YAB1                                                                           <------NtERF2                                                                           ------------>ATHB5     <---------GLK1(1)                         <----------DOF2            ------>NtERF2     --------->GLK1(1)                         ------>ZmHOX2a(1)         --------->DEAR3(1)     --------->At4g35610          <------MYB83--------->TOE2(3)          --------->ANAC46   <------ZmHOX2a(1)              <------MYB46(1)                      <---------RAP2.3(1) --ZAT2                          --------->MYB111(1)          <----------DOF2 --------->ICU4 --At4g35610                     --------->MYB59       <---------TOE1(2)--------->RAP2.3(1) ->ZAT2                       --------->ARR14(2)  <-----------HVH21    <---------ATERF1(1) ->At4g35610                  <---------ARR14(2) <-----------RAV1(1)  <---------DEAR3(1) ----ZAT18         <---------MYB52(1)  <---------ZAT6  <---------TOE2(2)---------->ID1       --------   gcttaggagctctcttcttcggtttgggaatggatttggtagtgtcatcctttgtcgcaggtctctttcgcttcggcgccatgattgagtcagagaatcg  26257200                                                                  <---------ZAT6                                                              <---------ANAC58                                                              <---------TGA1a                                                              <---------ANAC58                                                              <---------O2                                                              <---------bZIP60(2)                                                           ----------->TGA1                                                           ----------->HVH21                                                         --------->ALFIN1                                                       <---------ANAC58                               --------->ANAC58        <---------ANAC58                               --------->ANAC58    <---------ANAC46           --------->CCA1(2) --------->CCA1(2)     --------->ALFIN1      ---------->DOF2       <----------ID1      *TSS  <---------DEAR3(1)<------ZmHOX2a(1)   --------->At4g35610  ---------->DOF2        <------ZmHOX2a(1)  --------->ALFIN1      <------------CBF   <---------At4g35610--------->ARR11(3)   --------->TOE1(2)  <---------ANAC46 <---------AHL20(2) ->GLK1(2)<----------ID1================================================bZIP_DOF --------->GLK1(2)   aaggaagctaaagagacgaaggaagataaagagacgaaatgaaaccctaggaagcgggggtgtgacgagtgtgaggactaaataatctgagattgagggc  26257300                      ---------->DOF2                  <----------ID1                  --------->ANAC46                                      ------->TEIL              ---------->DOF2                                      --------->YAB1            --------->ANAC55(2)                                   <---------YAB1            <---------ANAC55(2)                             <---------YAB1--------->AHL20(2)        <-----------HVH21                                <---------AHL20(2)       --------->ANAC58                       <---------LBD16   --------->YAB1       --------->ANAC58                      <---------ANAC58  <---------YAB1       --------->bZIP60(2)                   <---------ANAC46 --------->AHL20(2)               ------       --------->ANAC46      <---------ANAC46<---------ANAC58 <---------AHL20(2)         <---------MYB59   gaaataagcgcgtcacataagcgccaaagtgatgggtttcgaaattttcgtggaattgttttatttttataatgaatttaaaacgtttgggcctaataaa  26257400                                   --------->ZAT14                                   <---------ZAT14                                   <---------ZAT18                                   --------->ZAT18                               <---------ICU4                               --------------->AtSPL8                               <---------------AtSPL8                              --------->ICU4                           --------->ICU4                         <---------------AGL15               ---------->DOF2               <----------DOF2<---------YAB1      --------->AHL20(2)           <---------ARR11(3)         <---------ALFIN1--------------->AGL15    --------->AHL20(1)          <---------CCA1(2)      ------>NtERF2      <----------DOF2          <---------AHL20(2)    <----------DOF2  --------->YAB1 ---->DOF2 <---------CCA1(2)--------->YAB1       --------->AHL20(2)  <-----------GT1    <---------YAB1   agttttgaggcccatctctttctctcgctataatgagtacacaaatgtcaaaaaaattagtagaaaagttttttctttctatatctatctatgattttag  26257500                               --------->GLK1(1)                               <---------GLK1(1)                         <---------MYB52(1)                       <---------ANAC46                       <---------ANAC58                                     --------->TOE2(3)                 <---------AHL20(2)          --------->TOE2(3)             ----------->GT1                 --------->AHL20(2)          --------->YAB1          --------->YAB1                <---------AHL20(2)          <<<<<<<<<ARR1           <---------AHL20(2)                --------->AHL20(2)          <<<<<<<<<ARR2 --------->ATHB12<---------TOE2(3)         <---------ZAT6<---------ANAC58--------->ANAC46  <---------YAB1 <---------AHL20(2)         <-   taaatgtgttagtgtgaatttaatttcgtttggaattcttcccacaatcttagctatctatgatttgtttttaataaatgttaaaagattacacaaatgg  26257600                                            <---------YAB1                                          --------->YAB1                                          <--------HAHB4                                          <---------ICU4                                         --------->ICU4                                         <---------ATHB12                                     ------>ZmHOX2a(2)                                    --------->CCA1(2)                                    <------ZmHOX2a(2)                                   <-----------ARR10                                   --------->ARR11(3)               <---------WRKY38(1) <---------AGP1       --------->LBD16             --------->AGP1      --------->LBD16              <---------ARR11(3)      <---------LBD16          ---------->DOF2     <---------LBD16         --------->ANAC58                         <-----------GT1 --------->KAN4(2)           --------->ANAC46                    <---------AHL20(2)           ------- ------TEIL<--------P        --------->ANAC58                <---------GLK1(2)    <----------DOF2   gttcattcccggggtagtcaacatcgactctacgaaagatctaatcatttttggacaatttcagaattttttttagcactctccctttcttacacatgaa  26257700  Previous    Next  AGI:  At1g69770.1    Description:  CMT3 (CHROMOMETHYLASE 3). Identical to DNA (CMT3) [Arabidopsis Thaliana] (GB:Q94F88;GB:Q94FN4;GB:Q9C9L8); similar to CMT1 (CHROMOMETHYLASE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G80740.1); similar to chromomethylase [Brassica rapa] (GB:BAF34637.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22021.1); similar to chromomethylase-like protein [Nicotiana tabacum] (GB:BAC53936.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contains InterPro domain Chromo domain; (InterPro:IPR000953); contains InterPro domain Bromo a Range:  from: 26251981    to: 26257248    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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