Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -       <-----------RAV1(2)                                                                         <-     <-----------HVH21                                                                            ---     <----------DOF2                                                  --------->ANAC58            <-- --------ARR14(2)                   ----------->RAV1(1)               --------->ANAC58            --- ------->ARR14(2)          <---------CCA1(2)                       --------->ZAT2               <---- ------>ALFIN1        <---------ANAC58                          ---------->DOF2                <----- -----ANAC46          <---------ANAC58                 --------->REM1(1)       <----------DOF2 ------ -----ANAC58    --------->ATHB12   --------->ANAC46  <-----------GT1 --------->ZAT18        <-------- -----ANAC58   <---------YAB1    --------->ANAC46 ----------->GT1  <---------At4g35610      ---------   gtgttcgcttcaggtatatgatttgcttcttatctccacaacatgacatatcatgttacatctcgttgaagctcgctaagactttgtttttgtttgctgc  26230100  <------NtERF2 ----------->GT1                       ----------->GT1 --------->LBD16                       <---------ANAC46              ----------->RAV1(1) -------->RAP2.6(2)                    <---------ANAC58           --------->ANAC58 --------LBD16                         <---------ANAC58           --------->ANAC58 --->NtERF2                           <------NtERF2               --------->ANAC46 -------At4g35610                   --------->ALFIN1             --------->At4g35610 ------>At4g35610                 <---------MYB46(3)             <---------At4g35610 -------RAV1(2)                  <---------AtMYB61          --------->ALFIN1 ----At4g35610         --------->MYB52(1)                 --------->ALFIN1 --->At4g35610       ---------->DOF2<---------ANAC46  ---------->DOF2<---------ALFIN1            <--- -At4g35610 <---------At5g28300  --------->ALFIN1  --------->At4g35610                    <------ZmHOX2a(1) >At4g35610<-----------GT1--------->LBD16          <---------At4g35610  ----------->RAV1(1)     -----   agccggaaacaatttaccgaagaacaagcggagaagtggtggggtgaaaatggagctaaagtgtgtgagcgccacaacattctagtttcttaggactcct  26230200                                         <---------AHL20(2)                                        <---------YAB1                                     <---------RVE1(1)                                              <                                    <---------ARR11(3)                                             <-                                    <---------ARR14(2)                                             --                                    --------->ARR11(3)            <---------MYB46(3)            <----                                    --------->ARR14(2)           <---------MYB52(1)      ----------->GT1 ------TOE1(2)                 <XXXXXXXXXXXXXXXXXXXXMIR162A/B   <-------GAMYB --------->AHL20(2)----- ->ZmHOX2a(1)  --------->AHL20(2)   <---------GLK1(2)          <-----------RAV1(1)      <---------TOE2(3)   atgtcttcttcaatagaataaatagagacatggatgcagatttttatttggaacatgatgtttttctgttgttcatagaaaaaaatgtttgatgtaaatt  26230300                                                                                       --------->WRKY38(1)             --------->AHL20(2)                                                        --------->WRKY12             <---------AHL20(2)                                                    --------->ICU4    <---------AHL20(2)                                                             <---------YAB1  -- ---------AHL20(2)                         --------->YAB1           --------->ANAC58  <---------WOX13(1) --------AHL20(1)                         <---------YAB1            --------->ANAC58--------->ATHB12 ------->AHL20(1)                      ------>ZmHOX2a(1)           --------------->AtSPL8        ---- -----AHL20(2)                     <-----------GT1                 <---------------AtSPL3       ----- ---->AHL20(2)                 <---------AHL20(2)            --------->YAB1     <---------YAB1-------   atatatttcattcaattttttgtcttagtattttttatttccttatgataaacaaatatcgaatcagagcaagtacttcattgtcatggttgactcaaaa  26230400      --------->ANAC58      --------->ANAC58      --------->ANAC46    --------->YAB1   <---------ATHB12                                              <---------WOX13(1)               --- --------->WOX13(1)                                           ----------->HVH21                  <--- ------->WRKY18(1)                                          --------->At4g35610               ------- ------->GT1                                          --------->AHL20(1)                      <------ ---->DAG2                           <-----------GT1  <---------AHL20(1)           --------->AHL20(2) --->DOF2                     --------->TOE2(3)    --------->AHL20(2)   ----------->GT1  ------------   ggtcaatcacacaactaagaaaacagaacaaatctaaattttcgatttttccaaaaaatattatctgactgatttagaaaaaaaaaaaaataccaattta  26230500                                                         ------>MYB46(1)                                                       <---------ALFIN1    <------MYB46(1)                                  --------->ANAC46    <------MYB83                                  --------->ARR14(2) ------>YAB1          <------------CBF      <---------TOE2(3) --------->LBD16 ------YAB1    <---------WOX13(1)        <---------AHL20(2)------->GAMYB                <----------DOF2 -->AHL20(2)  <------------CBF        --------->AHL20(1) ------>MYB83       <---------At4g35610 ---AHL20(2)<---------YAB1   *TSS     <---------AHL20(1) -------->P--------->GLK1(1)--------->YAB1 >CBF     --------->YAB1<---------ICU4--------->AHL20(2)<---------ALFIN1  --------->REM1(1) <--------   tgatgttggtaatggtaattgactaattgttacaaacaaatattttaagaaaaatccccaaccccagagaaacccttcatcttccatcatctttcttatt  26230600                                                        --------->GLK1(2)                                   <---------AHL20(2)   <---------ARR11(3)                                  <---------YAB1        --------->ARR11(3)                        <-------GAMYB                  --------->CCA1(1)        --------->ATHB12                       <---------MYB46(3) <-----------GT1                    <----------DOF2   <---------------------WRI1  --------->ICU4          --------->RVE1(1)   <---------YAB1 -YAB1         <---------TOE1(2)<---------ICU4       --------->AHL20(2)  <---------CCA1(2)  <--------   caatctgcaaaaattccaaggtatgtggttgtaatttttattttttacatactaaaaaaatctttgttaatcttcttatctttgatttgaagttttacat  26230700                                                                              --------->TOE2(3)                     <---------YAB1                                           --------->TOE1(3)                   ----------->GT1                                       <---------MYB55(2)                   --------->YAB1              <---------ANAC58          <---------MYB52(2)             --------->TOE2(3)      ---------->DOF2--------->ZAT6        <---------MYB111(2)      --------->AHL20(2)          --------->HSFB2a(2)                    --------->MYB46(3)      <---------AHL20(2)          <---------HSFB2a(2)    --------->TOE2(3)------->GAMYB ---GT1    <-------TEIL   <---------AHL20(2)   <---------ANAC58        ----------->RAV1(1)  <--------   tttggtgtttaaattcgtcaattgttatttttttttccaaaagcttgatgcttacacttccttcatgtttctccaacaaaccctaatttcgatataactt  26230800                 --------->ALFIN1             <---------ANAC58             <---------ANAC58             <---------ANAC46      --------->TOE2(3)   --------->ARR14(2)              <-------TEIL   <---------ARR14(2)            <---------ARR14(2)  --------->GLK1(1)              --------->ARR14(2)  <---------GLK1(1)      <-----------RAV1(1)           <-----------GT1                          <---- ---GT1------>ZmHOX2a(1)------->TEIL        --------->REM1(1)         <----------DOF2           <----   gacgaaatcctcaattcgtgtgtgtgtatgttgcagattcatggctacaacaagacttaacccctcttgccactttccagcgagcacaagactctcttgc  26230900                                                             <-------MYC3                                                             <-------MYC2                                                             ------->MYC2                                                             ------->MYC4                                                             ------->PIF5                                                             <-------MYC4                                                             ------->MYC3                                                             <-------PIF5                                                            --------->O2                                                            <---------O2                                                            >>>>>>>>>>HY5                                                            <---------PIF3(3)                                                            --------->ANAC46                                                            --------->PIF3(3)               ---------                                                            =============================bZIP_DOF                                                            <---------TGA1a               <---------MYB46(3)                                                            --------->TGA1a              --------->ALFIN1                                                        <-----------------PIF3(1)   --------->MYB52(1)                             <------ZmHOX2a(1)        --------->At4g35610       --------->ANAC58                       <---------LBD16            --------->MYB52(1)            --------->ANAC58 -----ANAC58         --------->MYB52(1)        --------->TOE1(3)              ---------->DOF2  ------ -----ANAC58       --------->MYB46(3)        ------->TEIL <---------ALFIN1 --------->At5g28300 ------   gagagctatctcggtctgagaacgaccgggaggattagttatgcccgaaccctaactgctccacgtggctatcttgctgtaaaagcaaacggtggtcaag  26231000  Previous    Next  AGI:  At1g69710.1    Description:  zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein. similar to Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G19420.1); similar to zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G42140.1); similar to Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G12350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48412.1); similar to putative ZR1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87854.1); similar to unnamed protein pro Range:  from: 26226172    to: 26230315    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g69720.1    Description:  HO3 (HEME OXYGENASE 3); heme oxygenase (decyclizing). similar to HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT2G26670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65667.1); contains InterPro domain Haem oxygenase-like; (InterPro:IPR016053); contains InterPro domain Haem oxygenase-like, multi-helical (InterPro:IPR016084); contains InterPro domain Heme oxygenase (decyclizing), plant (InterPro:IPR016951) Range:  from: 26230529    to: 26232243    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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