Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------GLK1(2)                                                                             <---------HSFC1(2)                                                                             --------->HSFC1(2)                                                                       <-------TEIL  <---------CCA1(2)                                                                     <---------GLK1(2)------->TEIL          <---------ARR11(3)             ------>ZmHOX2a(1)           --------->ARR14(2)          --------->ARR11(3)        --------->HSFC1(2)               <---------ARR14(2)         <---------CCA1(2)          <---------HSFB2a(1)              --------->ARR11(1)        --------->AHL20(1)          <---------HSFC1(2)              <---------HSFB2a(1)        <---------ARR11(3)          --------->HSFB2a(1)      --------------------->WRI1        <---------AHL20(1)<---------AtLEC2    <---------ZAT6 <----------DOF2 <---------At4g35610   tttgtatcaatatatctccaaatgttttgcagggaagaagctcctcaagtgttcatacacaggctttgaaagattcgtaagcttcttgaatctcagtgtc  26092500                                                                                        <---------ICU4                                                                                        --------->ATHB12                                                                                        -------->HAHB4                                                                                        <--------ATHB1                                                                               ------>MYB46(1)                                                                               ------>MYB83                                                                               -------->P------------                                                                               ======================                                                                              ----------->RAV1(1)                                                                             --------->AtMYB61                                                                             ------->GAMYB                                                                             ========================                                                                            --------->MYB46(3)                                                                            <---------MYB55(2)                                                                            <---------MYB52(2)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                    <---------TGA1a    --------->ICU4                                                                    --------->TGA1a    <---------ATHB12                                                     <---------ARR11(3)<-----------HVH21--------->YAB1                                                 <---------ANAC58   <---------O2       <---------YAB1                                                 <---------ANAC58   --------->O2  --------->ANAC55(2)                         <---------ANAC46 <-------MYC2              =================================                         <---------ANAC58 <-------MYC3              =================MYC_MYB  -------            ----------->GT1               ------->MYC3              ====================MYC_MYB    ------->TEIL   <---------AHL20(2)   <---------TOE1(2)      ----------->HVH21  <---------ANAC55(2)   <---------CCA1(2)     <---------ANAC58 ------->MYC2 ------>ZmHOX2a(2)  --------->WOX13(1) <-------   tacttgtatctatctagttatttttttgtgtgtttttggtagcacgttttagcttgatctcagaactgactcgtgtcaaccaacatgtaatgattgtatc  26092600            <-----------GT1  <---------TGA1a  --------->ANAC55(2)  --------->ANAC58  --------->TGA1a  --------->ANAC46  =================bZIP_DOF  <---------ANAC55(2)  ========================================bZIP_DOF  ===================================================bZIP_DOF                                  <-----  --------->ANAC58                                                                             ------  <---------O2                                    <---------WRKY45                            -------  --------->O2                                    <---------WRKY12                     --------->YAB1 ----------->TaNAC69(2)                           <---------WRKY38(1)                 --------->KAN4(1) ===========MYC_MYB                              <<<<<<<<<<WRKY6                     <---------KAN4(2) ===========MYC_MYB                       <----------DOF2                 --------->AHL20(2)  <------ ==================bZIP_DOF               <---------DAG2              --------->AHL20(2)  --------->YAB1 >TEIL  <----------DOF2                <-----------GT1       <----------DOF2   ----------->GT1<------ --CCA1(2)  --------->ZAT6     <----------DOF2   <<<<<<<<<<WRKY11  <----------DOF2  --------->YAB1   tctcacgtctctttatactacttgttctctaaactttgttttgactttttagtcaactatatgctttgactttaaaataaacagtagaataatcaaatta  26092700                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             ========                                                                                             ========                                                                                             ========                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                           <---------                                                                                           <---------ALFIN1                                                                                          <---------SPL7                                              <-----------GT1                             <------NtERF2                                            --------->CCA1(2)     ===================================                                     <---------ANAC46    <----------DOF2                  ------>NtERF2          <---------AHL20(2)        --------->LBD16      ============================================          --------->AHL20(2)  <---------At4g35610    ----------->HVH21                   --------->DEAR3(1)         <---------WOX13(1)   --------->At4g35610  <------ZmHOX2a(2)                  --------->ANAC46 ----AHL20(2)           --------->GLK1(2)  <---------ARR11(3)     =================================== --->AHL20(2)          <---------GLK1(2)   --------->ARR11(3)     <----------DOF2 =================== -->AHL20(2)   <---------AHL20(2)   <------NtERF2 <---------ARR14(2)              ---------->DOF2 ---AHL20(2)  <---------AHL20(2)    ------>NtERF2 --------->ARR14(2)              =================== ---AHL20(1)  --------->AHL20(2)  <---------DEAR3(1)------>ZmHOX2a(2) <---------TOE2(3) --------->RAP2.3(1)   tttaagagttgattaattaaatagagaatctcagaggccgcgtaagatttacgatctgacttttatttctttaagaaaaaacaaaaaaacgccgcacgtg  26092800     <---------ANAC46     <---------bZIP60(1)     =============MYC_MYB     --------->bZIP60(1)     --------->O2      <---------TGA1a     <---------TGA1a   --------->bZIP60(2)    <------NtERF2      --------->O2 <-----------HVH21     <---------O2 ---->REM1(2)          =======================================bZIP_DOF --->ALFIN1            --------->ANAC46 -PIF5             <-----------HVH21 -PIF4    <-------GAMYB--------->ANAC58 >PIF5    --------->At4g35610 >MYC2    =======================MYC_MYB -MYC3    <---------At4g35610 -MYC2   <---------MYB46(3) -MYC4<-----------HVH21<---------ANAC55(2) >MYC4===========================MYC_MYB >PIF4------------>AtMYB77 >MYC3<-----------TGA1 --------->TGA1a -----------SPL14 --------->ANAC58 --TGA1a --------->MYB52(2) ==================MYC_MYB =================MYC_MYB      <---------AHL20(2) ==============bZIP_bZIP<-----------HVH21 ->O2<---------O2 --------->ANAC46 --O2--------->TGA1a <---------ALFIN1 ->TGA1a<-----------RAV1(2)   --------->AHL20(2) --->OsbHLH66     ----------->HVH21                              *TSS ---OsbHLH66      --------->ANAC58                               --------->HSFB2a(2)     ------>NtERF2 ==bZIP_DOF     --------->ANAC46                             --------->ZAT14            ----------->HVH21 ==bZIP_DOF     --------->ANAC58                             <---------ZAT14            --------->WRKY12 ==bZIP_DOF     --------->ANAC58                        <---------ZAT14       --------->ANAC46   ---- ==============bZIP_DOF--------->ANAC55(1)      ------>ZmHOX2a(2)<---------HSFB2a(2)  --------->At4g35610 ==============bZIP_DOF--------->ANAC58------->TEIL<----------DOF2  --------->YAB1    <---------At4g35610   tagggtcgcgtcagttgcacgcgacacgtcaaataaatctgaaccctagatcgctttcttcagtgttctataaaaactaaactccattcgctgacttcgc  26092900                                                                                                    <                                                                                                   --                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                  <---------At4g35610        <-------                                                              <-----------HVH21             ---------                                 <---------CCA1(2)         --------->YAB1                   ---------                       --------->TOE2(3)                   <---------ICU4                --------->TOE1(2)                    <---------GLK1(1)               <---------At4g35610               <---------ARR14(2)         <----------DOF2      <-------TEIL          --------->At4g35610       <---------ALFIN1------- ------>DOF2        --------->GLK1(1)           --------->ARR14(2)--------->At4g35610 --------->ARR14(2)   aaagaagaacactttctctctgaaatctcaaattcatctcttctcttccgatttcgctgaatcatgtcagacgacgagcatcacttcgaatccagcgacg  26093000  <---------ZAT2  --------->HSFB2a(1)  <---------HSFB2a(1)  <---------At4g35610  <---------HSFC1(2)  --------->HSFC1(2) <---------ARR14(2) --------->ARR14(2) ------NtERF2 ------->LBD16 ------>DEAR3(1) ---NtERF2                    --------->At5g28300                   <---------HSFB2a(1) ----->ATERF1(1)              <---------MYB52(1)                    <---------ANAC58 ------LBD16                 ----------->GT1                        --------->HSFB2a(1) ->NtERF2                    --------->LBD16    <-----------HVH21   --------->TGA1a ----DEAR3(1)            --------->ANAC46      <---------MYB46(3)   <---------TGA1a --->O2                  --------->ANAC58     --------->ALFIN1      --------->bZIP60(1) --->DEAR3(1)            --------->ANAC58  --------->DAG2           <---------bZIP60(1) ----O2                --------->MYB46(3) --------->DAG2            --------->ANAC58 --ATERF1(1)       ------>ZmHOX2a(1)     =====================================bZIP_DOF >DEAR3(1)        --------->TOE1(3)      ---------->DOF2            --------->ANAC58               <- -->HVH21         --------->ANAC46    --------->YAB1                <---------ANAC58              --- -->ATERF1(1)     --------->TOE2(3)  <-------TEIL       <-----------TGA1  --------->AtLEC2        <--   ccggagcttctaagacttatcctcaacaagccggtaacattcgtaaaggtggtcacatcgtcatcaagggacgtccctgcaaggttttgtctctgatttg  26093100                                                          ----------->HVH21                                                        ----------->RAV1(2)                                                        <---------At4g35610                                                        --------->ANAC55(2)                                                     <---------MYB52(1)                                                     --------->DOF5.7(2)                                                    <-----------HVH21                                                    <-------GAMYB                                                   <---------ANAC55(2)                                                   --------->ANAC55(2)                                                   <---------ANAC58  --------->ATHB51                             --------->ZAT14  --------->ATHB12                            --------->ALFIN1 <-------GAMYB <---------YAB1                <---------ANAC46<---------ZAT14<---------MYB46(3)          <---------LBD16 --------ICU4             <---------AtLEC2    <---------ZAT6  ------>ZmHOX2a(2)         --------->GLK1(2) ------>ICU4        --------->YAB1     ---------->DOF2  <---------ANAC55(2)  <---------TOE2(3) -------YAB1    <------ZmHOX2a(1)----------->GT1   <---------ANAC58          <---------TOE1(3)      -   attattattgattttagaggaatcatcttcatggattgtattaaagcagtgttccgttacctgatcgttgtgaatttttgaggtttagtgattctggatt  26093200             <---------ZAT6           <---------ANAC46                                                ----------->GT1         <---------ZAT14                                             <---------YAB1      <---------ANAC46                                       --------->AHL20(2)                 <----  ------>ZmHOX2a(2)                                    ----------->GT1--------->YAB1     ----------->GT1 -------->ARR11(3)                          <---------TOE2(3)<---------AHL20(2)<---------AHL20(2) ---   gtgatctggtgtttagtgttgagaaaaacctctgtttttgaagtttatggatttatagggtttttaaatctataatagggtttaattcaattggtgatat  26093300                                                             <---------O2                                                             ===================bZIP_DOF                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->O2                  <-------GAMYB                              --------->TGA1a        <---------ARR11(3)          --------->CCA1(2)                             --------->ANAC58           <---------CCA1(2)        --------->YAB1<---------TOE1(3)                 --------->ANAC58           <---------GLK1(1)       <---------YAB1 <---------TOE2(3)                 --------->ANAC46 ---------->ID1<----------DOF2 <---------ANAC46<---------MYB46(3)                 <-----------HVH21  <-----------RAV1(1) -------RAV1(1)  --------->MYB55(2)           --------->ANAC58       <----------DOF2--------->ARR11(3) ------>ALFIN1  --------->ALFIN1              --------->ANAC58  <-----------HVH21--------->YAB1   gtggggtttatgatataggtggttgaggtatcgacttcgaagactgggaagcatggtcacgccaagtgtcactttgttgccattgatatctttacttcta  26093400  Previous    Next  AGI:  At1g69400.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein / mitotic checkpoint protein, putative [Arabidopsis thaliana] (TAIR:AT1G49910.1); similar to unknown [Populus trichocarpa] (GB:ABK92875.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 26090624    to: 26092683    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g69410.1    Description:  eukaryotic translation initiation factor 5A, putative / eIF-5A, putative. Identical to Eukaryotic translation initiation factor 5A-3 [Arabidopsis Thaliana] (GB:Q9C505;GB:Q94JU4); similar to EIF-5A (eukaryotic translation initiation factor 5A-1), translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G13950.1); similar to eukaryotic translation initiation factor-5A [Brassica napus] (GB:AAR91929.1); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain KOW (InterPro:IPR005824); contains InterPro domain Translation protein SH3-like, subgroup (InterPro:IPR014722); contains InterPro domain Euk Range:  from: 26092865    to: 26094049    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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