Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                  <--                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----       ---------->DOF2                                                                          ----- ->ZmHOX2a(2)                                                                                   ----- -ZmHOX2a(2)                                                                                   ------ -->AGP1                                                                                       <----- -->ARR14(2)                                                                                   <----- -->ARR11(3)      --------->YAB1                                                               <----- ---ARR14(2)   --------->YAB1    <----------DOF2                      <---------ICU4    --------->At4g35610 ---ARR11(3)----------->GT1--------->CCA1(2)                       --------->YAB1    <---------At4g35610 ---AGP1--------->DAG2   --------->CCA1(2)                     <-------TEIL <----------DOF2 ---------   tagtggagaaaaagtagtaataagaagagataagactttaagtgcttcgtcttgtaaaccacaagtacatcatcatgtctttgagagagccgatgcaata  26083200    <---------AHL20(2)                                                  <---------ANAC58   <---------AHL20(2)                                                   <---------ANAC55(2)   --------->AHL20(2)                                                   --------->ANAC55(2) -------->ATHB12                                                        <---------ANAC58 --------AHL20(2)                                                       <---------ANAC46 -------WOX13(1)                                                        <---------ANAC55(1) --->ATHB1                                                            <-----------GT1 ----ATHB1                                                         ----------->GT1 -----ICU4                                                     --------->ZAT2 ---->ATHB12                                                   <---------At4g35610 ---->YAB1                                                   --------->HSFB2a(2) ---->ATHB51                                                 <---------HSFB2a(2) --->ICU4                                                   <---------ANAC58 ----ATHB51                           <----------DOF2       <---------ANAC46 ----YAB1                 <---------AHL20(2)                <---------ANAC58 ----ATHB12              --------->AHL20(2)          --------->ICU4<---------ZAT6              ------ --->ATHB5              <---------WOX13(1)      ----------->GT1<---------ZAT2     --------->YAB1   <-   attgattaaatgtttcgatggctctgatttattcgtttgactttacaaaaatgtaattagtttcgagcagagttacttgttctataatcgctaaataacc  26083300                                  ------->PIF5                                  <-------PIF5                                 --------->ANAC58                                 --------->ANAC58                                             <------                               <---------ALFIN1                                               <------                            <---------ALFIN1                                                  -------                            --------->ANAC46                      <---------MYB52(1)         --------                           -------->P                     --------->ARR11(3)    --------->ANAC46                           ------>MYB46(1)                <---------ARR11(3) <---------ARR14(2)       ----------->GT1     ------>MYB83        --------->YAB1   <---------ANAC58<---------ETT(1) --->MYB46(3)             ----------->RAV1(1) <---------YAB1 <----------DOF2 --------->ARR14(2) --------ATHB12          --------->AtMYB61  <---------At4g35610 <---------ANAC58----------->HVH21   aataaaccaaggtgaaactcggtagcaccaacaccacgtccaactccgatgataacaataggtctttcgttactgttccaatccgacacgagcgatataa  26083400                                                           <---------TOE2(3)                                                          <-----------GT1                                                         <-----------GT1                             --------->ANAC58        <----------DOF2 <---------ZAT6              --------->ANAC58     <---------ARR11(3) ---YAB1              --------->GLK1(2)           --------->ARR11(3) ---AHL20(2)     --------->AtMYB61              --------->ANAC58 -->AHL20(2)    --------->MYB46(3)              --------->ANAC58 ->AHL20(2)   --------->ANAC46  ----------->RAV1(1)  <---------DAG2                    <---------At4g35610   ttagagttatcgattcccaccactaatctgaaggcaacatcggaatcgacaagaactttttaacatttcatagcatagatagcaaattcagataatagca  26083500                                                                                               <-----                                                                                            <-------MYC3                                                                                            ------->MYC2                         --------->AHL20(2)                                                 <-------MYC2                     <---------AHL20(2)                                                     ------->MYC3                     --------->AHL20(2)                                                    --------->ANAC55(1)                     --------->AHL20(1)                        --------->YAB1              --------->ANAC55(2)                     <---------AHL20(1)                      <---------WOX13(1)            --------->ANAC58                    <---------AHL20(2)                      <------------CBF               --------->ANAC58                  --------->YAB1                           --------->ATHB12                <---------TGA1a               --------->YAB1                             <---------YAB1                   <---------ANAC55(2)              --------->AHL20(2)                        --------->YAB1                     --------->ANAC46            --------->YAB1                          --------->AHL20(2)                     <---------O2          --------->AHL20(2)                        <---------AHL20(2)                     --------->TGA1a         --------->YAB1  <---------AHL20(2)    <---------AHL20(1)                    --------->AHL20(2)        --------->AHL20(2) ----------->TBP     <---------AHL20(2)                  --------->TOE2(3) <---------ANAC55(2)--------->AHL20(2)         --------->AHL20(2)         ----------->GT1  ========== ----------->GT1--------->AHL20(2)--------->ZAT6   <---------AHL20(2)   <------------CBF   --------->O2   aataagtaaaataaaaataaaaataaattatatataacaccaaaaacattttatttatttatgattgataacaaaattgtagaaacattaaacacgtgat  26083600                                                                                            ---------                   *TSS                                                                     <--------                 <---------HSFB2a(2)                                                   --------->LBD16                 --------->HSFB2a(2)                                                   ------>NtERF2             ------>ZmHOX2a(1)                                                         --------->At4g35610         ------>MYB46(1)                                                              --------->DEAR3(1)         ------>MYB83                           <---------AHL20(2)     <---------AHL20(2)--------->DEAR3(1)       --------->AtMYB61                --------->ARR14(2)            <---------YAB1 <---------LBD16    <---------ALFIN1                    <---------ARR14(2)   --------->ARR14(2) ------>ZmHOX2a(1)---- ----ARR11(3)<----------DOF2       <-----------GT1           <---------ARR14(2)<---------MYB59   <--- =======================bZIP_DOF   --------->MYB52(1)    <-----------GT1    <-----------GT1 ---------   attcttccacctatcctttctcgaccagataattttgtaacggattggatttttttgtgtcactatccgatttttatttttcctaactccgccgaatccg  26083700        ------>ZmHOX2a(1)        <----------DOF2     ---------->ID1 ------>ZmHOX2a(1) >GLK1(2) -ARR14(2)                                       <---------GLK1(2) ----->ARR14(2)                                <---------YAB1                    --------->LBD16   <- ------MYB52(1)    <---------ALFIN1         <----------DOF2                    <---------LBD16  ----- >ARR14(2)   <----------DOF2              ------>ZmHOX2a(1)        ----------->ARR10   <-----------GT1   ttcctctgtccttttctttctccactctctgtctctgtctcttcctcttttgattctccgatggaggctaagttactcaaacccgcgttttacaattccc  26083800                                                                               --------->HSFB2a(2)                                                     ----------->GT1     <---------ARR11(3)         --------->TOE1(2)                     <---------HSFB2a(2)       --------->ARR11(3)  ========  --------->TOE2(3)                            --------->HSFB2a(2)       --------->ARR14(2)  ========  --------->TOE1(3)                        --------->WOX13(1) ---------->DOF2  <---------HSFB2a(2)<-- --------ALFIN1                          <---------YAB1     --------->YAB1   ----------->RAV1(2) <--- ---->LBD16                           --------->ICU4----------->GT1      <---------ARR14(2)  ------>ZmHOX2a(1)   caaacctcaatcttacgaattcttcaagactcatctcgcgattatcaatctggaacgataaatcaaaagttggactatcttctgggtctctcttcctccg  26083900                  <---------LBD16                  ------>ZmHOX2a(2)            <-----------------AGL1        <---------GLK1(2)       --------->At4g35610       <---------ZAT2       <---------At4g35610       --------->ZAT2       --------->HSFC1(2)                      ------>ZmHOX2a(2)       <---------HSFC1(2)       <---------ANAC58       --------->HSFB2a(1)      <---------ANAC58    --------->LBD16  <---------MYB52(1)       <------ZmHOX2a(2)    <---------At4g35610         <---------ANAC46   --------->ANAC46 --------->LBD16          <---------ARR14(2)                                   ---  <---------LBD16<------ZmHOX2a(2)           --------->ARR14(2)                                   <-- =======================HOX2a_HOX2a      <---------At5g28300               <---------ARR11(3)   ----- ========================HOX2a_HOX2a    <-----------GT1                    --------->ARR11(3)   <---- ---------ARR10 <---------ARR14(2)  --------->AHL20(2)                --------->YAB1      --------->LBD16 ------CCA1(2)  --------->ARR14(2)<---------MYB52(1)           ---------->DOF2          <---------LBD16   tctctccgcagcttctccgatccggtaatgtgttccgtttatttaccgatcgtcttccattgatataaagaatcataaatcttgttttaaaccggagata  26084000           --------->DREB2C(2)           --------->DEAR3(1)           <---------ALFIN1           ------->GAMYB          --------->ATERF1(1)          --------->DEAR4(2)          --------->MYB46(3)          --------->ORA47(2)          <------NtERF2         ------>NtERF2                                                               <---------STY1(1)         <---------ATERF1(1)                                                   <---------ARR14(2)        --------->DEAR3(1)                                                     --------->ARR14(2)     --------->ANAC58                                                   <---------ANAC58     --------->ANAC58    <----------DOF2                                <---------ANAC58  <---------ATERF1(1)     --------->ANAC46   <---------ANAC58                                <---------ANAC55(2)   ---------->DOF2      <---------ANAC58                                <---------ANAC46 --------->ZAT18 -------->GT1    --------->AHL20(2)                                    <---------------AtSPL8 --------ID1------>NtERF2--------------------->WRI1        --------->CCA1(2)   <---------GLK1(2)  <-- ---->MYB52(1)   <---------AHL20(2)          <---------TOE2(3)         <---------------AtSPL3    ---- -----DOF5.7(2)<----------DOF2      <---------ANAC46    ----------->HVH21<---------SPL7  <---------ZAT18   acgaaaaaagccaccgcctttaatttgctttgtctgtctcgttgattaaggcattgatgtgatatgggcttattgcgtacagatactctagggggctact  26084100  Previous    Next  AGI:  At1g69370.1    Description:  CM3 (CHORISMATE MUTASE 3); chorismate mutase. similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) Range:  from: 26083619    to: 26085390    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version