Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------ARR11(3)                              <---------CCA1(2)           --------->ARR11(3)                            <---------CCA1(2)      --------->AHL20(2)                        --------->YAB1                                 <-----      <---------AHL20(2)                       --------->AHL20(2)                             <------ ------->DOF2                              <---------AHL20(2)                             <----------DOF2 ---->AHL20(2)                             --------->AHL20(2)                     <---------ICU4    - -----AHL20(2) <-----------HVH21           --------->AHL20(1)                  --------->YAB1 <------ ---->YAB1<---------CCA1(2)    --------->ANAC46<---------AHL20(2)     --------->TOE2(3)<---------YAB1   aaaaggaattatatatctgtcatttctatctatactcaaaacgaattaattaataactcatatatctgactatctcaaaaatcaaaattatgctttgctt  25985300                                  --------->WRKY38(1)                <---------HSFC1(2)                                <---------At4g35610                  --------->HSFC1(2)                                <-------GAMYB                        --------->HSFB2a(1)                           <---------At4g35610             ---------->DOF2                           <---------ZAT14               ============================================                           --------->ZAT14               ----------------->AG--------->HSFB2a(2)  <-- -----DOF2          --------->AHL20(2)                   ----------------->AGL1               ------- ---ANAC58          <---------AHL20(2)                   <-----------------AGL1              -------- ----->ZmHOX2a(1)  --------->AHL20(2)         --------->MYB46(3) ----------->GT1      --------->AHL20(2) ---ANAC58       ------->TEIL   --------->At4g35610 ------>ZmHOX2a(1)<---------HSFB2a(1)--------->AHL20(2)   tcctattctcttcattatgcatttaattctgctctgttgacttcttcaacaatcctctatccaaagaaggaaacttcttcaagaaccaaaaaatataaag  25985400                                     <---------MYB59                                  <-----------GT1                               <---------ICU4                              <---------YAB1                              --------->AHL20(2)                              <---------AHL20(2)                                <------ZmHOX2a(1)                             --------->AHL20(1)                       --------->AHL20(1)                             --------->AHL20(2)                       --------->AHL20(2)                             <---------AHL20(1)                       <---------AHL20(2)                        <---------ATHB12                             <---------AHL20(2)                       ------>MYB83 ----------------->AG             --------->AHL20(2) =====================================================MADS_MADS  --------------->AGL15 -------REM1(1)        ------>MYB46(1)     ----------->GT1       --------->HSFB2a(2) -->DAG2             <---------MYB59=============================================MADS_MADS        --- -->DOF2             --------->AtMYB61    ----------->GT1        <---------HSFB2a(2)              <--   ttgtagtaactgaaacatgaagaccaaacaatataattaccaaaatgtttaatacagaaattgttttctaaaaaaattagcaggaatacaacgaagagaa  25985500                                   <---------ANAC58                                   <---------ANAC58                               <----------DOF2                              <---------DAG2                          <-------MYC2                          ------->MYC3                          <-------MYC3 ------>ARR11(3)          ------->MYC2                <-----------GT1        --------->ARR11(3) -------ARR11(3)  -------->P------->TEIL       ----------->RAV1(1)           <---------ARR11(3)  ----   gataatgtgagagttacgcttaccacaacgtgccttttcttgagtttagcaacattttactgaatgtagatgaagagaagataatgtgagagttacgctt  25985600                                                                                      --------->At4g35610                                                                            <---------ANAC58                                                                            <---------TGA1a              <-----------RAV1(1)                                           <---------ANAC58          <----------DOF2 --------->ARR11(3)                                <---------O2         <----------DOF2  <---------ARR11(3)                                --------->O2           --     ------->MYC3 ----------->GT1                             ========================bZIP_DOF     --     ------->MYC2 <---------MYB46(3) --------->TOE1(3)        <----------DOF2         <---------At4g35610     <-------MYC3--------->ALFIN1    --------->TOE2(3)    --------->PCF5    <---------ANAC46---------     <-------MYC2<---------AtMYB61 ------->TEIL     <-----------GT1<---------ZAT6  ------>ZmHOX2a(1) ---->P------->TEIL      <---------CCA1(2) <---------ZAT18---------->ID1    --------->TGA1a ---------   accacaacgtgcctttctggtggtgatatatcttaagaaccttagtgggcattttcactggtccctttactgtaagtctcgtgtccttagctccatgaaa  25985700                        --------->ZAT6                   *TSS<------ZmHOX2a(2)                -------->HAHB4                                            <---------GLK1(2)                <---------AHL20(2)                                        --------->AGP1                <---------ICU4                                            --------->ARR11(3)               <---------ATHB51                                           <---------ARR11(3)               <---------ATHB12                                           --------->ARR14(2)             --------->YAB1                                   <-------GAMYB<------ZmHOX2a(2) ------->ANAC58--------->ICU4                                ----------->GT1------>ZmHOX2a(2) ------->ANAC58<---------YAB1                                --------->ALFIN1 ------>ZmHOX2a(1)   <-- >ANAC46     <---------ICU4               ------->TEIL--------->MYB52(1)  <---------ARR14(2)    ----- >AtLEC2 --------->ANAC46     <---------ATHB12        -------->P<-----------GT1             <------NtERF2   caagtcaatacacactaattattcgatcactaatcaaacaaatgtatcagagagactaccagggtgttacattacagatcctcatccattcggaggcact  25985800          <---------ARR14(2)          <-----------ARR10         <---------CCA1(2)       <---------ANAC58       <---------ANAC58                  <----------DOF2   <------------CBF                    ----------------->AGL1  --------->ATHB51              --------->GLK1(2)  --------->ATHB12             --------->ARR14(2)            <---------ANAC58  <---------ICU4               <---------ARR14(2)            --------->TOE2(3) --------->ICU4                <---------GLK1(2)          ------>ZmHOX2a(1)<---------ANAC58 <---------YAB1           --------->ANAC58            <---------ARR11(3)   <---------ANAC58   ------- -------YAB1              --------->ANAC58     --------->ANAC46      <---------YAB1         <-------- ------>GT1           --------->YAB1   <-----------------AGL1<---------ANAC58        <---------YAB1   gttattattgcctatcttatctaattagaagcaaattctgggcctttataggccaacatccttccttgattctaattgggttctattccgattaatacgg  25985900                 <---------MYB46(3)      <---------ATHB12     --------->ANAC58     --------->ANAC46     --------->ANAC58   --------->AtMYB61  <---------ATHB12  --------->MYB46(3)  <---------MYB55(2)                                              ----------->RAV1(1) ------>MYB46(1)<----------DOF2                           --------->TOE2(3) -------->P    <---------ANAC58                          >>>>>>>>>MYB98 ------>MYB83  <---------ANAC58               <-----------GT1---------->DOF2             <------ZmHOX2a(2) -->ANAC46  --------->ZAT18          --------->YAB1    ------>ZmHOX2a(1)         <---------------AtSPL8 ---GT1     <---------ZAT18       --------->YAB1 <---------ALFIN1<----------ID1---------->DOF2      <   cccaaccactcaagttcgcttgttgtaaacttgaaataataagaaattttgccactcctaacttaatgcaacaaaaaaaaaaaaaggtccgatctattaa  25986000                                          <---------------AGL15                                          --------------->AGL15                               <-----------GT1                           <---------ARR11(3)                           --------->ARR11(3)                           <---------AHL20(2)                                                       -                           --------->AHL20(2)                                                       <               ----------->HVH21 <---------YAB1                                           --------->ATERF1(1)       --------->KAN4(2)   --------->AHL20(1)                                            <---------ATERF1(1)     <-------TEIL          <---------AHL20(1)                                      ---------->DOF2 <- ---------DOF5.7(2)       --------->AHL20(2)                                ---------->DOF2  <-------   gttcacgttcattctctctgaccttcaaatatattacaattttgctccatattgaagcaaataaacttatcaaattacaaaagaagaaaggagcctgcta  25986100                                                       ---------->DOF2                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <---------AHL20(2)                                             --------->ATHB12                                            --------->AHL20(2)                                            <---------AHL20(2)                                           <---------AHL20(2)                                        <---------AHL20(1)         <---------YAB1                 <---------AHL20(2)       --------->YAB1                   --------->AHL20(2) -------->AHL20(2)                      --------->AHL20(1)                --------->AHL20(2)        < ---------AHL20(2)                      --------->ARR11(3)                <---------AHL20(2)     <--- --------AHL20(2)                       <---------ARR11(3)      --------->ANAC58  <-----------RAV1(1) --At4g35610--------->CCA1(2)          --------->AHL20(2)       --------->ANAC58 ------->TEIL    <---   atttatatatgatgatataagaacatcgaacatttgccaaaatatattaattggatgaaaagagcctagccactatttatatgtatgtggcaaactgttt  25986200  Previous    Next  AGI:  At1g69110.1    Description:  pseudogene, 40S ribosomal protein S20 Range:  from: 25985461    to: 25985719    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g69120.1    Description:  AP1 (APETALA1); DNA binding / transcription factor. Identical to Floral homeotic protein APETALA 1 (AP1) [Arabidopsis Thaliana] (GB:P35631;GB:Q8LA98;GB:Q9LQA8); similar to CAL (CAULIFLOWER), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26310.1); similar to MADs-box protein [Citrus sinensis] (GB:ABM67697.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 25985993    to: 25989976    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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