Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <---------PCF2                                                    --------->PCF2                                                    --------->PCF5                                                    --------->TCP15(1)                                                    <---------PCF5                                                    --------->TCP11(2)                                                    --------->TCP20                                                    --------->TCP16(1)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   ----------->TCP11(1)                                               <---------MYB46(3)                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <---------ANAC46                                            <---------ANAC58                                            <---------ANAC58                                           xxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                     <---------At4g35610                                     --------->At4g35610                                     <------NtERF2 <---------TCP16(2)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                    --------->DEAR3(1)                                   --------->ATERF1(1)          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <-----------RAV1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <------NtERF2   <---------TCP23 <-----------HVH21                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(i)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            ----------->RAV1(2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxx>smallRNA(s)                                 <---------ANAC58  <---------TCP15(2)           xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---------ANAC46 <---------MYB46(3)           xxxxxxxxxxxxxxxx>smallRNA(s)                                 <---------ANAC58--------->ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(s)                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       ------>ZmHOX2a(2)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxx>smallRNA(i)   =====================RAV                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ARR14(2)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ZAT6       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(i)        <---------YAB1        --------->ALFIN1--------->ALFIN1----------->RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(s)        <---------TOE2(3)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->LBD16       <-----------GT1       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------TOE2(2)   ------>MYB46(1)           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TOE1(2)   ------>MYB83            xxxxxxxxxxxxxxxxxx>smallRNA(si3)   ================================RAV --------->TOE2(3)         xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s) <---------MYB59           xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(se3) -------->ANAC55(2)        xxxxxxxxxxxxxxxxx>smallRNA(se3)   ------->GAMYB<------ZmHOX2a(1) ---------GT1              *TSSxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------RAV1(2)         -- --->ARR11(3)              xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)          <- --->AHL20(1)            --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(s)--------->PCF2xxxxxxxxxxxxxxxx>smallRNA(s) ----ARR11(3)     =============================RAVxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i) -->AHL20(2)      ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------LBD16    <---------YAB1   atacctaattaacattacaacaacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtcccaggatcgaaacctggctctgatagt  25944900       <----------DOF2       =============================================bZIP_DOF  <-----------GT1         <----------DOF2         --------->AHL20(2)         --------->HSFB2a(2) --------->GT1            ==========================bZIP_DOF --------->MYB59 <---------HSFB2a(2)<---- --------ZAT6          <-----------GT1    --------->TGA1a    <---------TOE2(3)                 <<<<<<   attgttactcttttttttttttttgtaacttttgggcttagcccatgtctgataaattcgaataaggtatagtattgttttggaaacataggcatatgtt  25945000                                           <---------ICU4                                          <---------YAB1  <---------DAG2                =============================bZIP_DOF     <----------DOF2                ---------->DOF2         --------->YAB1  --------------->AGL15                    <---       <-----------GT1                 <---------YAB1   <---------------AGL15                   <----  ===========================================bZIP_DOF  ----------------->AGL2              ----------  <----------DOF2                  --------->TGA1a    ---------->ID1     --------->HSFB2a(2) <------- -------GT1<----------DOF2         ==================================bZIP_DOF             <---------- <<<MYB98  ==================================bZIP_DOF ------>NtERF2      <---------HSFB2a(2)<--------   acttctttttttcctttgtaaagtttgggtttggcccaagtctgataattccattcggccctttatagtattgttttggaaacatagccatatgtcaccg  25945100                                                             ----------->HVH21                                                            ------->MYC3                                                            <-------MYC3                                                           <---------bZIP60(1)                                                           --------->ANAC55(2)                                                           --------->bZIP60(1)                                                           --------->ANAC46                                                           <---------ANAC55(2)                                                           <---------bZIP60(2)                                                           <---------TGA1a                                                           --------->O2                                                           <---------O2                                                   <-------MYC3                                                   <-------PIF4                                                   ------->MYC4                                                   ------->MYC3                                                   ------->PIF4                                                   <-------MYC2                                                   ------->MYC2                                                   <-------PIF5                                                   <-------MYC4                                                   ------->PIF5                         --------->ICU4           <---------TGA1a                    <---------ANAC55(2)           --------->TGA1a                <------MYB83                    --------->ANAC55(2)           --------->O2      --------->TOE1(3)   <-----------ARR10                    <---------ANAC58              <---------O2  --------->MYB46(3)      --------->GLK1(2) ------MYB52(1)     <---------ANAC46    =============================bZIP_DOF    ----------->GT1 -----SPL7          ----------->GT1     ====================bZIP_DOF--------->TOE2(3)  <---------GLK1(2) ->HVH21            <---------ANAC58<------ZmHOX2a(2)<-------TEIL<---------ALFIN1<------MYB46(1) --At5g28300   <---------------AtSPL3   ---------->DOF2    --------->TGA1a    <---------MYB52(1) -HVH21      --------->YAB1   <-----------GT1    <-----------------------TaNAC69(2)  ----------->ARR10 ---GT1  <---------MYB52(2)   --------->MYB52(1)<------------OsbHLH66       <---------YAB1   ttcgattagaaacaaacatagtacgtgaaaattaacagatcagaaagagaccacgtgcatcacgtgaccaccttaaatctgataggttagaatctcgtct  25945200              <-------PIF5              ------->MYC3              <-------MYC3              <-------MYC2              ------->MYC2              <-------MYC4             <---------O2             --------->O2             =============================================MYC_MYB                       --------->ANAC55(2)             >>>>>>>>>>HY5                                                              --------->ANAC58             <---------TGA1a                                                            --------->ANAC58             --------->TGA1a                                               --------->ANAC55(1)             --------->ANAC55(2)                                           --------->ANAC55(2)            <---------TOE1(2)                                              ==========================           <---------ALFIN1                                                --------->ANAC58       <---------ARR14(2)                                                  --------->O2 --------->ANAC46   <-------MYC3                                                            <---------O2 <---------ANAC55(2)   ------->MYC3 <-----------HVH21                   --------->LBD16        --------->ANAC46  --------->O2------->PIF5                        <---------LBD16          <---------TGA1a  --------->TGA1a                                ====================================MYC_MYB  <---------O2------->MYC4                       -------->P--------->YAB1  --------->TGA1a  <---------TGA1a        --------->ANAC58       <---------ARR14(2)         --------->ANAC58    ------  ----------->GT1 --------->bZIP60(1)           --------->ARR14(2)        <-----------bZIP911(2)  --------->ANAC55(2)    --------->ANAC58       --------->MYB52(1)       <---------ALFIN1     -------  =====================bZIP_bZIP  <-------TEIL ----------->HVH21      <---------SPL7 <---------ATHB12  <---------ANAC46<---------bZIP60(1)         <---------MYB59 ----------------------->TaNAC69(2) <---  <---------ANAC55(2)    --------->ANAC46    ----------------->AGL1 --------------->AtSPL3   <-------   tatcacgtgaatcccacgtgtcatcacaagctacggttcatttagaggcctaaccgggtaatcacatcaagtcgtacacgtctccaaatcacgaaactga  25945300                                                             ========================================                                                             <---------O2                                      <---------MYB52(2)     --------->TGA1a                     <---------ANAC55(2)                     <---------bZIP60(2)                     --------->ANAC55(2)            --------->At4g35610   ---------->DOF2   <---------O2     *TSS    <<<<<<<ZML2    <---------TGA1a                       -- =============bZIP_DOF               <---------At4g35610     --------->O2                    -------- --->MYB52(1)        --------->ANAC46--------->ZAT2 <---------ZAT2  --------->ANAC58        <-------- ---->HVH21--------->ANAC58          --------->At4g35610 <-----------HVH21                --------->ANAC58 ------ANAC46 --------->ZAT14    <---------ALFIN1   --------->ZAT2  --------->ANAC58      --------->ANAC46 --MYB52(2)--------->ANAC58      ----------->RAV1(1)<---------At4g35610                   --------->ANAC58   cggacaaaagctcaagtaaactcacgtagtctctcccacagctaactagaactcagccgagtcacgaggcacccaaaaaacaaaaaacaaataagcaaca  25945400                   --------->DAG2                                                --------->GLK1(1)               <------NtERF2                                                     <---------GLK1(1)           <---------ATERF1(1)                                              --------->DAG2          --------->DEAR3(1)                                          <-----------------AGL1          <---------DEAR3(1)                                          <---------LBD16          ----------->HVH21                                           ===============================   --------->ARR11(3)  ----------->GT1                            ----------->ARR10<---------ATHB12 =========bZIP_DOF---------->DOF2                       ------>NtERF2 <-----------------AG -------->DOF2------>NtERF2                             --------->LBD16 --------->LBD16             < --->RAV1(1) --------->ANAC46                          <---------DEAR3(1)  ---------->DOF2         -- --ID1    --------->ETT(2)    --------->AHL20(2)      <---------LBD16--------->MYB52(1)   <------ZmHOX2a(1)   aaaaagagctcgtcgacggcaaaagttgaaaataaaacaataaacagtcgaaattctccggcgaagatgagaaccggaaaaggaaatcaagaggaagaag  25945500              <----------DOF2  --------->LBD16 <---------ANAC55(2)                          --------->ZAT6     ------->GAMYB <---------ANAC46                --------->ARR11(3) <---------ZAT6  ----------->GT1 ===================================================================MADS_MADS ---------LBD16--------->DOF5.7(2)   ------>ZmHOX2a(1)        ----------->RAV1(1) ------->MYB52(1)  --------->ZAT6<---------ARR11(3) <---------------AGL15                   <--------   attacggagaagaagactttaactctaaacgtgaaggtccttcttccaacactactgttcatagcaacagaggtaaattgttcgatttgggagacttttg  25945600                                      <------MYB46(1)                                      <------MYB83                                   <-------GAMYB                                        --------->ARR11(3)                   --------->TOE2(3)<--------P           ------->TEIL                   <---------ARR11(3)                  <---------ANAC46<---------MYB46(3)  --------->ANAC55(2)               <---------GLK1(2) --DOF2   <---------MYB46(3)     <---------AtMYB61    <---------ANAC55(2)             ----------->ARR10   aatttttcttagttgttgtttcgtcaatttgtgttttggttggagctattgttgatatgtatcgagatggatttgaatagtttgggattagatttttcta  25945700                                                                 --------->ZAT18                                           ---------->DOF2       <---------ZAT18                                         <-------TEIL   ---------->DOF2                                ---------->DOF2      --------->YAB1                              <---------YAB1        <---------YAB1    <-------TEIL                     <---------MYB46(3)--------->ARR14(2)        <---------------------WRI1       <--    ---------->ID1<---------ANAC46     <---------ARR14(2)--------->DAG2               <-----------HVH21   agttttgtctctgtgtgattcggtgtttgattttgaaagcagattcaaaggaaaatgataaagctagtgcgatacgttctaaacattcggtcactgagca  25945800  Previous    Next  AGI:  At1g69000.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 25944827    to: 25944898    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g69010.1    Description:  BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2); DNA binding / transcription factor. Identical to Putative transcription factor BIM2 (BIM2) [Arabidopsis Thaliana] (GB:Q9CAA4;GB:Q8LC47;GB:Q8RXV7); similar to BIM1 (BES1-interacting Myc-like protein 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G08130.1); similar to BIM1 (BES1-interacting Myc-like protein 1) [Arabidopsis thaliana] (TAIR:AT5G08130.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15328.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPr Range:  from: 25945338    to: 25947499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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