Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------At4g35610                                                                                        --------->At4g35610                                                                                        <---------ZAT2                           --------->TOE2(3)                                            --------->ZAT2                         --------->AHL20(2)                                          --------->LBD16                 <---------MYB52(1)         --------->HSFB2a(2)                     <---------ANAC58                <-------GAMYB               <---------HSFB2a(2)                 <---------ANAC58            --------->ARR14(2)              <-----------RAV1(2)          <---------ATHB12 <---------REM1(1)            <---------ARR14(2)       <---------At4g35610        <------ZmHOX2a(2)   <---------ANAC58   <----------DOF2  <---------YAB1   --------->At4g35610      <------ZmHOX2a(1) <---------ANAC58   agtttctttctccatttccgttatcaattcattaacttcatcagacccagaagactcatcttcaggatcagtcgaatcaatagcttgcgcagctgtagca  25944200                                                        <---------WRKY18(1)                        ----------->TGA1               --------->WRKY38(1)                   <---------WRKY18(1)                 --------->WRKY45                  --------->WRKY12                     --------->WRKY12                  --------->WRKY38(1)                 <---------MYB52(1)                          ---          --------->ANAC55(2)                         --------->DOF5.7(2)            --------->ANAC58          --------->ANAC55(1)                        <-------GAMYB                   --------->ANAC46          --------->ANAC46                          <---------ANAC46     <-----------GT1     <-------          <---------ANAC55(2)                --------->ANAC46         >>>>>>>>>GATA-1--------->ANAC58   tacccttcaaacacataacattgaccatgacgaaacgagcttaatccacccatttcgttgactggatttatagataaaccatttctaacgccactgagat  25944300                 --------->ANAC46                 --------->ANAC58                                                                <---                 --------->ANAC58                 <------ZmHOX2a(1)                              ----           --------->ARR14(2)                 --------->LBD16                             --------->ARR11(3)           <---------ARR14(2)               <---------LBD16                               <----------           --------->GLK1(1)           <---------ICU4                                 ---------->DOF2           --------->GLK1(2)          <---------YAB1                     <-----------GT1  <---------ARR11(3) ------>MYB52(1)<---------LBD16       --------->ICU4                  --------->TOE2(3) ------->TEIL< --TOE2(3)<---------GLK1(2) <-----------GT1--------->MYB52(1) --------->At4g35610    <---------ATHB12   taacagaagacagaatcccacggactctattcactggataatgagtaccggaggagctagaatcagataaaaacttaacctttctcaatgaagctcttcc  25944400          <---------ALFIN1        ===================================HOX2a_HOX2a   --------->KAN4(2)  <---------KAN4(1)  --------->HSFB2a(1)  --------->KAN4(1)  <---------HSFB2a(1)  --------->HSFC1(2)                           --------->YAB1            <-----------GT1  <---------HSFC1(2)                     --------->ANAC58               <---------ZAT14 <---------KAN4(2)                       --------->ANAC46   --------->At4g35610      ------->PIF5 ------HSFB2a(2)                         --------->ANAC58   <---------At4g35610      <-------PIF5 ----->HSFB2a(2)                        ------>NtERF2     <---------RAP2.6(2)   ------>NtERF2 -ARR10 ------>ZmHOX2a(1)           ------>ZmHOX2a(2)   <---------MYB46(3)<---------At5g28300 ---------GLK1(2)               <---------YAB1 ----------->GT1          --------->ZAT14         <----   cagaatgttcctccacattttttgaatcgtttttgtgatcgccacgaaatggtaatagtggctgcttcagatagtttactgcctccacgagcacaatctc  25944500                                                              <-------TEIL                                                            <---------GLK1(2)                                                            <---------ARR14(2)            <---------ANAC46       <---------At4g35610   <---------YAB1                 --------->ARR14(2)            <---------ANAC58      ------->TEIL      ----------->GT1          ---------->DOF2                          <---------ANAC58 -----LBD16             <---------ZAT6 --------->YAB1     ----------->ARR10--------->AHL20(2)   gggctatgtagctacttgattttgtagagttattaatacaaacatagaaatcaaagagttcagattcgaagaacagattaaaaacaagacttgggtgaag  25944600                                                  --------->RAP2.6(2)                                                  --------->DEAR3(1)                                                 <------NtERF2                                                 --------->RAP2.3(1)                                                --------->At4g35610                                                --------->LBD16                                               ------->GAMYB                                               --------->DEAR3(1)                                               <---------ATERF1(2)                                --------------->AtSPL3   <-----------GT1                               --------->ZAT14 --------->RAP2.6(2)                             --------->LBD16   --------->RAP2.3(2)               ---------->DOF2<---------MYB52(1)------>NtERF2          ----------->GT1    *TSS----------->GT1<---------ATERF1(1)        ------>ZmHOX2a(2)   <---------ANAC46   --------->RAP2.3(3)       <------ZmHOX2a(2)   <------NtERF2       --------->ATERF1(2)       --------->CCA1(2)   <-----------------------TaNAC69(2)      --------->ARR14(2)   --------->ATERF1(1)--------->MYB46(3)                                   --      <---------ARR14(2)  <---------RAP2.3(1) --------->ATERF1(1)                                  <-      <---------ARR11(3)  ------>NtERF2       --------->RAP2.3(1)                                  <-      --------->ARR11(3) --------->DEAR3(1)   --------->ERF1                                       --      --------->AGP1     <---------DEAR3(1)  --------->ZAT2                                        <-      <---------AGP1    --------->RAP2.3(1)  --------->At4g35610                                   --     --------->GLK1(1)  --------->ATERF1(1)  <---------At4g35610                                  <--     <---------GLK1(1)  <---------ABI4(2)    <---------ATERF1(1)                   --------->At4g35610    ----------->ARR10  <---------ATERF1(1)  --------->DEAR3(1)  --------->YAB1     <---------At4g35610   agaagagagatctggagaaaagagaaggcgccgtgaagtacaaacacagccgccgaaataaacccttcataaaacctttggtttctgcttcacatttcat  25944700              <---------ARR14(2)            ----------->HVH21<-------TEIL    <-----------HVH21        ------>ZmHOX2a(2)                                                    <-- ------>ZmHOX2a(2)         <---------GLK1(2)                                                   ------ ----->TEIL --------->ANAC46<------ZmHOX2a(2)                                                  <----- --------ARR14(2)          <---------ARR14(2)                                                  ------ --------AGP1 --------->ARR14(2)<---------MYB52(1)            --------->GLK1(2)           <---------YAB1 ------->ARR11(3)          --------->AGP1                    <---------ARR14(2)         --------->YAB1 --------ARR11(3)          --------->ARR14(2)                <---------GLK1(2)         <---------YAB1 ------->ARR14(2)         --------->At4g35610                --------->ARR14(2)      --------->YAB1 - -------CCA1(2)     <----------DOF2                 ---------->DOF2          <-----------GT1  -------   ggatcttgtcaaacccgacccgcttatcagatccgttacgctcttatttgggctcaaagcccatattctggcacgagttatacattaccatgataaatat  25944800                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <---------PCF5                                                    --------->PCF5                                                    <---------PCF2                                                    --------->PCF2                                                    --------->TCP16(1)                                                    --------->TCP11(2)                                                    --------->TCP15(1)                                                    --------->TCP20                                                   ----------->TCP11(1)                                                   <---------TCP23                                               <---------MYB46(3)                                              --------->ALFIN1                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <---------ANAC58                                            <---------ANAC46                                            <---------ANAC58                                           xxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     --------->At4g35610                                     <---------At4g35610                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------HVH21                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                    --------->DEAR3(1)          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   --------->ATERF1(1)        ----------->RAV1(1)                                   <------NtERF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <-----------RAV1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx>smallRNA(s)                                 <---------ANAC46  <---------TCP16(2)             ----------->RAV1(2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---------ANAC58  <---------TCP15(2)           xxxxxxxxxxxxxxxx>smallRNA(s)                                 <---------ANAC58--------->ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(s)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(s)                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ------>ZmHOX2a(2)                               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       --------->ARR14(2)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)         --------->ZAT6       --------->ALFIN1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)        <---------YAB1        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TOE2(2)        <---------TOE2(3)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------TOE1(2)       <-----------GT1       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->LBD16   ------>MYB83              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------RAV1(2)   ------>MYB46(1)         xxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s) --------->TOE2(3)         xxxxxxxxxxxxxxxx>smallRNA(s)       =====================RAV <---------MYB59           *TSSxxxxxxxxxxxxxxxx>smallRNA(i)   ================================RAV ---------GT1              xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s) --->AHL20(1)              xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(se3)           <- ----ARR11(3)              xxxxxxxxxxxxxxxxx>smallRNA(se3)   ------->GAMYB<------ZmHOX2a(1)        -- --->ARR11(3)     ----------->RAV1(1)<------NtERF2<---------MYB46(3)   <---------LBD16    <---------YAB1 -------->ANAC55(2)      --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)--------->PCF2xxxxxxxxxxxxxxxx>smallRNA(i) -->AHL20(2)      =============================RAVxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)   atacctaattaacattacaacaacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtcccaggatcgaaacctggctctgatagt  25944900       =============================================bZIP_DOF       <----------DOF2  <-----------GT1         <----------DOF2         --------->AHL20(2)         --------->HSFB2a(2) --------ZAT6             ==========================bZIP_DOF <---------TOE2(3)                 <<<<<< --------->GT1         <-----------GT1    --------->TGA1a    --------->MYB59 <---------HSFB2a(2)<----   attgttactcttttttttttttttgtaacttttgggcttagcccatgtctgataaattcgaataaggtatagtattgttttggaaacataggcatatgtt  25945000                                           <---------ICU4                                          <---------YAB1  <----------DOF2                =============================bZIP_DOF     <---------DAG2                ---------->DOF2         --------->YAB1  <---------------AGL15                    <---       <-----------GT1                 <---------YAB1   --------------->AGL15                   <----  ===========================================bZIP_DOF  ----------------->AGL2              ----------  <----------DOF2                  --------->TGA1a    ---------->ID1     <---------HSFB2a(2) <------- <<<MYB98  ==================================bZIP_DOF ------>NtERF2      --------->HSFB2a(2)<-------- -------GT1<----------DOF2         ==================================bZIP_DOF             <----------   acttctttttttcctttgtaaagtttgggtttggcccaagtctgataattccattcggccctttatagtattgttttggaaacatagccatatgtcaccg  25945100  Previous    Next  AGI:  At1g68990.1    Description:  DNA-directed RNA polymerase, mitochondrial (RPOMT). Identical to DNA-directed RNA polymerase 1, mitochondrial precursor (RPOT1) [Arabidopsis Thaliana] (GB:P92969;GB:O23698); similar to PDE319/SCA3 (SCABRA 3), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G24120.2); similar to PDE319/SCA3 (SCABRA 3), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G24120.1); similar to DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] (TAIR:AT5G15700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15344.1); similar to phage-type RNA polymerase [Nicotiana tabacum] (GB:CAC82574.2); si Range:  from: 25938660    to: 25944629    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g69000.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 25944827    to: 25944898    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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