Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                         ---------->DOF2                                  ------>MYB46(1)                                       <---------YAB1                                     ------>MYB83                                     --------->YAB1          <---------ICU4          <---------WRKY18(1)                                --------->AHL20(2)          --------->ICU4          --------->WRKY45                             ----------->GT1        ------->MYC3           --------->YAB1----------->RAV1(1)                          <---------At4g35610       <-------MYC3  <---------WOX13(1)--------->WRKY12 >CCA1(2)                 --------->At4g35610     ------->TEIL <---------YAB1       --------->WRKY38(1)   gaacttgaacttattcaacattgaaactagctgataaaatcataaaagtatgcacatgagacatgatgactgactaaaaataagtgttgaccaacaaaaa  25918300                                                <---------ZAT14                    --------->DAG2              --------->ARR14(2)                              <----                    <---------------AtSPL8      --------->ZAT14                            --------->ATHB12        ---------->DOF2 <-------TEIL      <-----------GT1        <---------AHL20(2)        <---------ICU4  ----------->GT1  ---------->DOF2    <----------DOF2            --------->AHL20(2)        --------->YAB1 ----->DOF2   ----------->GT1--------->AHL20(2) <---------ARR14(2)                        --------->ICU4   aagagagtaaaaaagactgaaaaaagttcataaaaatagtctttatacagtatacagtttttcacaaataaatgccaaatagaattgaatgaatgattac  25918400                                -------->HAHB4                                --------->YAB1                                              <------ZmHOX2a(1)                                <---------ICU4                                          ---------->DOF2                               <---------ATHB51                             <---------ARR14(2)                               --------->ICU4                <---------ARR11(3)     --------->YAB1                             --------->YAB1                  --------->ARR14(2)  --------->YAB1                            <---------AHL20(2)          <---------YAB1      <---------ARR11(3)                            --------->AHL20(2)        <---------ICU4        --------->ARR14(2)      -                          --------->TOE2(3)           --------->YAB1       <------ZmHOX2a(1)---------                     ------>MYB83  --------->YAB1    <---------ATHB12   <---------HSFB2a(2)<---------                     ------>MYB46(1)          ---------->DOF2--------->ARR11(3) <---------YAB1 ------                   --------->TOE2(3)      --------->ANAC58   <---------ARR14(2)--------->AHL20(2)   <       <-----------GT1  <---------AHL20(2)--------->ANAC58   --------->GLK1(2) <---------AHL20(2)   - -----YAB1         <---------MYB59<---------YAB1     --------->ICU4     --------->HSFB2a(2)----------   taatgagatttaccagacaaacctaattcattaattatgaaaacaagaaaaagaaatcatgaaaatctgtttttcgaggattttaataacaaaaggataa  25918500                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                                                 <---------ANAC55(2)                                                                                 <---------ANAC58                                                                                 <---------ANAC55(1)    --------->AHL20(2)                                                           --------->ANAC55(2) -------->AHL20(1)                                                              <-------------------- -->GT1                                             --------->ZAT2             <-----------GT1 -ID1--------->AHL20(2)                             <---------ZAT2          <--------HAHB4 --->AHL20(2)                                       --------->At4g35610     <---------ICU4         <- ---------AHL20(2)                  ---------->DOF2 <---------At4g35610     --------->ATHB51 <------- -------->AHL20(2)  <---------TOE2(3)           <-----------HVH21           --------->YAB1 --------->AHL20(2) ->GT1  ---------->DOF2    ------->GAMYB  <-----------HVH21                --------->ICU4  <---------AHL20(2)   aataaaataaaaaagagagaataagataaccccaaaatgaaagttgtcactgtcagctcggattgtttagaattggaataattacgtgtttaattaaacc  25918600                                                  --------->ZAT18                                                  <---------ZAT18                                                --------->At4g35610                                             <---------MYB52(1)                              ------------>CBF  <---------At4g35610                 --------->TOE2(3)                            <-----------GT1 <----------DOF2                       <---------YAB1 ---TaNAC69(2) <---------ATHB12            --------->TOE2(3)                 --------->YAB1 --------REM1(2)    <---------ATHB12    <-----------GT1                    *TSS<---------YAB1<------- ----GT1 <-----------GT1<----------DOF2<-----------GT1      --------->AHL20(2)--------->AHL20(2)   atacacagatttaactaatcaaatcacttttaaccaatttttaaacctttagctcacaaaaaaaaaatgtctctgcaaattataatccttgaatactttg  25918700                     --------->YAB1                     -------->HAHB4                 <---------AHL20(2)       <---------ANAC46                              ----------->GT1      <------NtERF2<---------TOE2(3)               --------->ALFIN1            <----------DOF2    <---------DREB2C(2)                          <---------ANAC58      <----------DOF2    <---------ANAC46--------->ICU4  <---------MYB52(1)                 <---------DAG2    <---------DEAR3(1)      --------->DAG2       <---------ANAC58  --------->ARR14(2)            <<<< ---DOF2     <---------YAB1---------->DOF2       <---------ANAC46  <---------ARR14(2)       <--------   gctatggcggtgtttatgtttaatgatcaaaaagctctgttttttatgcaagcgtgggtataaaatccagttccttttccgattttttgttcttccttct  25918800                                           <----------DOF2                                       <---------ALFIN1                                    <---------ZAT18                                    --------->ZAT18                                ---------->DOF2                                ----------->GT1                                --------->DAG2 <---------ANAC58      --------->At4g35610       <-----                           <---------------AGL15                     <---------ZAT2            <-----        <----------DOF2    --------------->AGL15     <----------DOF2 <---------At4g35610 ----------->GT1 <<<<<TBF1   <-----------GT1   ---------->DOF2 <---------ANAC58      --------->ZAT2   --------->DAG2 ----------------ANAC81   <-----------------AGL1 <---------CCA1(2)<---------At4g35610---------->DOF2   tcttcacttcctttttttcttctccatttctcaaaaaggccactcctttgcttatctttctctctctctgcagctgaagaacagagaaaaagggtttttt  25918900                                                                                          --------->GLK1(2)                                                                                         <---------ARR14(2)                                                                                         <---------GLK1(2)                                                                                         --------->ARR14(2)         --------->MYB52(1)                                  <-------TEIL              ----------->ARR10   ----------->HVH21                                        --------->CCA1(2)    --------->ALFIN1 ----YAB1---------->DOF2        <----------DOF2   <---------TOE1(3)           --------->DAG2 ----AHL20(2)<------ZmHOX2a(1)<---------At4g35610 <---------TOE2(3)          ---------->DOF2        -   attgtctgacccaaaggacccagtttcaattcagcttttgttgttagaaattgaggtaaaagattcaaaatttgttcagaaaagtggcacagattctgaa  25919000                                                                                     --------->ARR11(3)     <---------AHL20(1)                                                              <---------ARR11(3)     --------->ARR11(3)                               <---------TOE2(3)          --------->YAB1     <---------ARR11(3)                           <----------DOF2             --------->DAG2    --------->RVE1(1)                     ----------->ARR10                  ---------->DOF2        <    --------->CCA1(1)                  --------->TOE1(3)                  --------->YAB1 <----------DOF2 --------->AHL20(2)                    --------->TOE2(3)           <---------------AtSPL8------>ZmHOX2a(1) <---------AHL20(2)                   --------->At4g35610          <---------------AtSPL3<---------DAG2 -------->AHL20(2)   <----------DOF2 <---------TOE1(3)<---------TOE1(3)  <---------ZAT6------>ZmHOX2a(2)   aaattaatatctttcttctcactcttttagctcgattctaagcttaaatctggtttagggtttttggagtttgtactgataaagcatgatcctttttgtc  25919100         <---------GLK1(2)      <---------WOX13(1)    <---------WRKY18(1)   ----------->HVH21   --------->WRKY38(1)   --------->WRKY12          <---------AHL20(1)                          <---------REM1(2)   --------->WRKY45          <---------ARR11(3)                 <---------ICU4  <---------MYB52(1)         --------->ARR11(3)                 --------->ATHB12  --------->DOF5.7(2)        --------->AHL20(1)                 -------->ATHB1 <-------GAMYB               --------->AHL20(2)                <---------ATHB12                 <---- <---------At4g35610         <---------AHL20(2)             ------------>ATHB5              --------- ---------ANAC46   <----------DOF2--------->ATHB12  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <--------   ttccgttgactgattctgttccttttctcaatatattgatttgggcttctcttgttcttcatcgaatcattggtcttcaaggtgaatgtgtttgtgtagt  25919200  Previous    Next  AGI:  At1g68920.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.2); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15348.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 25918675    to: 25921569    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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