Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->AHL20(2)                                                                        <---------AHL20(2) <---------AHL20(2)                                                                     --------->ARR11(3)   <---------AHL20(2)                                                                <---------ANAC46   --------->WOX13(1)                                <-----------RAV1(1)             <---------ANAC58 <---------AHL20(2)           ------>MYB83----------->GT1                          <---------ANAC58 --------->AHL20(2)--           ------>MYB46(1)   <---------AHL20(2)            <----------DOF2   <---------AHL20(2)    <-         --------->TOE1(2)------->TEIL                  <---------ZAT6  --------->AHL20(2)--------->AHL20(2) ---->AHL20(2)         <---------ANAC55(2)          <---------ZAT14  <---------ARR11(3)--------->WOX13(1) -----AHL20(2)         <---------ANAC46             --------->ZAT14----------->ARR10 <---------ATHB12   ttttgttgatacctacaaatttgtaacgtatattatgtggtctctaatacctagtttagtgctatagcgtagattttatttatataaatcaattaaatct  25864400                                                        --------->ANAC55(2)                                                        <---------ANAC55(2)                                                 <---------ANAC55(2)                                                 --------->ANAC55(2)                                               --------->CCA1(2)             <---------CCA1(2)                <---------ARR11(3)       ------>NtERF2                          --------->ARR11(1)      --------->DEAR3(1)                      --------->ARR11(3)                           <---------    <---------ZAT18<-----------GT1        ---------->DOF2                        <----------DOF2 ------->ZAT14 <---------AHL20(2)       <---------AHL20(2)                --------->AHL20(2) --------ZAT14<---------AHL20(1)       --------->AHL20(2)                 <---------AHL20(2)   ------   gtatagtgccgactcatatattttcgatgctctgaaacaaatttaaaagatatgtattatgtgtcattttgtatatataaattctttttgtgtcttttta  25864500                       ----------->GT1                    <---------AtLEC2                   --------->REM1(2)                <---------ANAC46                --------------->AGL15          <---------YAB1                                  <---------ICU4                            <        --------->AHL20(2)                           --------->ARR14(2)                             <        <---------AHL20(2)                  <---------ANAC58                                        <       <---------AHL20(2)                   <---------ANAC46                                        <       <---------AHL20(1)            ------>ZmHOX2a(2)   --------->ICU4                             - -DOF2 --------->AHL20(2) <---------GLK1(1) <---------ANAC58                           --------->ZAT14 --->AHL20(2)<-----------GT1        <------ZmHOX2a(2)<---------ARR14(2)               <---------MYB52(1)   tatatacaaattatttttctgtgtatggatatttggcgatcgcattgcttgtccatatacttattagaaatagaaatagaaatagaccgtgaagtactaa  25864600                                                                    -------->HAHB4                                                                    <--------ATHB1                                                                    <---------ICU4                                                                   <---------ATHB51                                                                   --------->ICU4                                                                 --------->YAB1         ---------->DOF2                                        <---------AHL20(2)       --------->AHL20(2)      --------->TOE1(3)            <----------DOF2   --------->ANAC46       <---------AHL20(2)      --------->YAB1              --------------->AGL15 ---------ANAC58             --------->GLK1(2)          <-----------GT1     <---------ALFIN1 ---------ANAC55(2)         <---------GLK1(2)        --------------->AtSPL8 --------->AtMYB61 ---------ANAC58        ---------->DOF2       <----------DOF2  --------->AHL20(2)  --------->ANAC46 ---------ANAC46    --------->GLK1(2)        <---------DAG2<---------DAG2  --------->ANAC46 ---------->GT1----------->GT1 --------->TOE2(3)   <xxxxxxxxxxxxxxxxsmallRNA(s)----------->RAV1(1)   atgcgtaaattaaaagatagataatctaaagaatcttaaacccattacctttttttttttacctttttaataattccaccacaacacaaaacacaagttg  25864700                        ----------->GT1                        --------->YAB1                     <------------CBF             --------->AtLEC2             ------>ZmHOX2a(1)         --------->ARR14(2)          --------->ANAC58         <---------ARR14(2)        --------->MYB52(1)         --------->ARR11(3)      <---------MYB52(2)                            --------->ANAC58        --------->GLK1(1)        --------->MYB46(3)                          ---------->DOF2        <        <---------GLK1(1)    --------->MYB46(3)     ----------->TBP  ----------->RAV1(1)           <-        <---------CCA1(2)    <---------MYB52(2)   ------>ZmHOX2a(1) --------->REM1(1) *TSS ---------- --------->ANAC46   --------->ATHB12 --------->ANAC58         <---------ANAC46 --------->ANAC58<-----   caaactccacatatcctgcaaaccattggtaacaaacaaacgcatgagtttcctatatatgtctgcgtctacaacatttgaaagcaaacttttgtctctt  25864800                                          ------>MYB46(1)                                          -------->P                                          ------>MYB83                                        <---------MYB59                                        <---------MYB111(1)                            ------>MYB83--------->MYB46(3)                            -------->P  <---------MYB111(2)                            ------>MYB46(1)  --------->ZAT6            <---------TOE1(2) -----------GT1  <---------MYB52(1)     <---------MYB46(2)                <-------TEIL ----------GT1 <---------ANAC58      <-----------GT1                 --------->AHL20(2)             - >ID1          <---------ANAC58   <----------DOF2 <----------DOF2    <---------AHL20(2)          <--- -----DOF2  <----------DOF2------>ZmHOX2a(1)<---------DAG2         --------->AHL20(2)           <----   tttaactctcttaactttcgtttcttctcctaccttcttttaccaacctttcctttctcttacacacatatatatatacatatatagagagagagaagag  25864900                                                                               >>>>>>>>>TBF1                                                                         >>>>>>>>>TBF1                                                                       ------------------------>ANAC81                                                                      >>>>>>>>>TBF1                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->DOF2                                             ---------->DOF2 >>>>>>>>>TBF1         --- ---ZmHOX2a(1)                                      --------->ZAT18  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------ID1                <---------CCA1(2)         <---------ZAT18>>>>>>>>>TBF1  >>>>>>>>>TBF1   ---   gacaaagagttgaaagatgaagactctcatgtcttcatagaaacaagtgatatgtgcgctaagaaagaagaagaagaagaagaagaagaagacagttctg  25865000                                                                                ------>ZmHOX2a(2)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                            <---------YAB1                                                                          <---------ICU4                                                                          --------->YAB1                                                                       <---------ICU4                                                           --------->YAB1<---------YAB1                                                   <---------CCA1(2)   --------->YAB1        ----------->RAV1(1)                   ------>MYB46(1)       <---------ICU4   --------->AtLEC2       <---------ICU4      ------>MYB83 <---------ICU4--------->ICU4 ------>ANAC58         <---------MYB59      --------->MYB46(3)      --------->YAB1------>ZmHOX2a(1) ------>ANAC58      <-----------GT1   <----------DOF2   --------->YAB1<---------YAB1   aagccatgaacaacatacaaaattaccaaaatgacctcttctttcaccaactcatctctcatcatcaccatcatcatcatgatccttctcaatctgaaac  25865100                                                                                               ------                                                                                              -------                                                                                              <------                     --------->ARR11(3)                                                  ============                     <---------ARR14(2)                                                  <------ZmHOX2a(2)                     <---------AGP1                                                      ============                     --------->ARR14(2)                                             --------->TOE2(3)                --------->TOE1(2)                                                 ------>MYB83<------             <---------DOF5.7(2)                                                  ------>MYB46(1)            ----------->HVH21                                                     -------->P ------>MYB46(1)           <---------MYB52(1)                                                    --------->MYB55(1)           --------->DOF5.7(2)                     <---------ANAC58             <------------AtMYB84          --------->LBD16                          <---------ANAC55(2)          --------->AtMYB61        <---------LBD16                            --------->ANAC55(2)          <---------MYB111(2)      --------->GLK1(2)                            <---------ANAC58             <---------MYB55(2)      --------->ARR14(2)                        --------->GLK1(2)               <---------MYB46(2)      <---------ARR14(2)                       <---------GLK1(2)                <---------MYB111(1)    <---------At4g35610           <---------ARR11(3)                            --------->MYB46(3)    <---------HSFC1(2)            --------->ARR11(3) <---------CCA1(2)          <---------MYB59------    --------->At4g35610       <-----------GT1  --------->ARR14(2)            <---------ALFIN1------>MYB83    --------->HSFC1(2) ------>ZmHOX2a(2)       <---------ARR14(2)         --------->AtMYB61  --------   tttgggagcatccggtaacgttggatctggtttcactatcttctctcaagattccgtctctccaatatggtctctacctccacctacctcgatccaacca  25865200                                                 --------->HSFC1(2)                                                 <---------HSFC1(2) --->AtMYB61            <<<<<<<<<TBF1            <---------HSFB2a(1) -->MYB46(3)        ------>ZmHOX2a(1)            --------->HSFB2a(1) ---MYB111(2)    ------>ZmHOX2a(1)          --------->ANAC46                                      <-- ====================HOX2a_HOX2a            --------->ANAC58                                      <-- =======================HOX2a_HOX2a         --------->ANAC58               --------->YAB1        ---- ---MYB55(2)    <---------ALFIN1           <---------LBD16           <---------At4g35610       <----- ->GAMYB      ------>ZmHOX2a(1)    <---------ARR11(3)       ------->GAMYB  <---------ICU4     <------ >P       --------->ARR14(2)      <---------GLK1(2)      ----------->RAV1(1)                  <------   ccatttgatcagtttcctcctccttcttcttctccagcatctttctacggaagtttcttcaacagaagtcgagctcatcatcagggattacagtttgggt  25865300  Previous    Next  AGI:  At1g68810.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G25710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42085.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 25864786    to: 25866783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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