Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------ANAC55(2)                                                       <-------TEIL                                                      --------->GLK1(2)                                                   <---------TOE2(3)                           <-----               --------->AHL20(2)<-----------GT1   <---------TOE1(3)  ----------->GT1       ---------      --------->ZAT6      ------>ZmHOX2a(2)        <---------YAB1    <---------TOE2(3)     --------->AHL20(2)    --------->MYB52(1)   <------ZmHOX2a(2)     <----------DOF2      --------->YAB1         <---------AHL20(2)   ------->GAMYB        <---------ARR11(3)     <---------DAG2      <---------ATHB51       <---------AHL20(2)  <---------MYB52(2)    --------->ARR11(3)  <---------ALFIN1  --------->ZAT6         <----------DOF2   aacaactaacacaaaaattaaaacacgatctcaattaacaacactcacactttaagattcagtaacacaataatgtaaaaatcgaaactttatttattta  25842600                                                                    --------->ANAC58                                                                    --------->ANAC46                                                    --------->HSFB2a(2)                                                    <---------HSFC1(1)  --------->ANAC46                                                    <---------HSFB2a(2) --------->ANAC58                    <-----------GT1                 --------->HSFC1(1)  --------->ANAC58                 --------->ARR11(3)             <----------DOF2     --------->ANAC58                 <---------ARR14(3)        <----------DOF2         --------->WOX13(1) <---------DAG2  <---------GLK1(2)        ------>ZmHOX2a(2)    --------->REM1(1)  <----------DOF2  -- <----------DOF2 --------->ARR14(3)      <------ZmHOX2a(2)    <-------TEIL   ------>MYB83          <- ------GT1       <---------ARR11(3)     --------->ARR11(3) --------->HSFC1(2)-------->P           <-- ------>AtSPL8   --------->ARR14(2)     <---------ARR11(3) <---------HSFC1(2)------>MYB46(1)    -----   cctctttttcaagcttcaagattttctctataagagcatcacgatcttttctttctagagaagcttcatcaagcaagccaacctctttgaacttctgcca  25842700                                               <---------ANAC58                               <------                                               <---------ANAC58                             ---------         <---------HSFB2a(2)              <---------ICU4                                   <---------WRKY38(1)         --------->HSFB2a(2)              --------->ATHB12                                 <---------WRKY12       ------>ZmHOX2a(1)                 --------->ICU4                                  ------>NtERF2 <---------YAB1        <----------DOF2   <---------YAB1                                 ------>NtERF2 ------->YAB1     <---------ALFIN1       <---------ATHB12                               --------->LBD16 --------ICU4   --------->ANAC58  ----------->GT1                  <----------DOF2    <---------LBD16 -------ATHB12  --------->ANAC58 <---------AtMYB61      --------->DAG2                --------->ATERF1(1) ---->WOX13(1)---------->DOF2   <------ZmHOX2a(1)      ---------->DOF2        <---------MYB52(1)   atcatcatcctctcggagaagcaccctttgtggaggaggtgtaatgatttcgtcggaaaaagctatggcctttcccttccggtctgtctccggccaacga  25842800                    <---------ANAC58                    <---------ANAC58                   <-----------------------TaNAC69(2)           <---------ZAT18        <---------ANAC46                                                  <---------ALFIN1      --------->LBD16  --------->SPL7                                    -------->P     <---------ANAC46<---------SPL7                 <---------ATHB12     ------>MYB46(1)    <---------LBD16--------------->AtSPL3   <-------TEIL --------->ALFIN1------>MYB83 <----------DOF2<---------GLK1(1)        <---------At4g35610           --------->AtMYB61 ---ATHB12 <---------ZAT14               --------->At4g35610          --------->MYB46(3)         ---- >MYB52(1) --------->ZAT18             <-----------RAV1(2)  ----------->HVH21      <-----------GT1   ttcctttgcggagtgaacatttccgttcgaaccctagagacccagatgcatcaaatgaagaggggacgagaaaccaacaccattttcacaactttcgact  25842900                                                        <---------ANAC46                                                       <------NtERF2                                                      <---------RAP2.6(3)                                                      <-----------HVH21                                                      ------>NtERF2                                                     --------->DEAR3(1)                                                     --------->RAP2.3(3)                                                    --------->DEAR4(2)                                                    --------->RAP2.3(1)                                                    --------->ERF1                                                    --------->ATERF1(1)                                                    --------->RRTF1(1)                                                    <------NtERF2                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                  --------->ANAC46                                                 <-------MYC3                                                 ------->MYC3                                                 <-------MYC2                                                --------->ANAC58                                                --------->ANAC46                  *TSS                                 <---------ANAC46------->MYC2               --------->At4g35610                           <----------DOF2      --------->ANAC58            --------->LBD16                      ---------->DOF2      ----------->HVH21                <---------At4g35610   <--             <---------------AGL15  <---------TOE2(2)--------->RAP2.3(2)   --------->ANAC46       <-- ------->GT1 --------------->AGL15  <---------TOE1(2)--------->RRTF1(3)  ------>ZmHOX2a(1)       ----   cgtgaaatcaaattgctcaaatttgaaagctttcttcgtgggtttgtgacacgcgccgtcgtgaacaattctctcctccgctacaaaactactctgtaat  25843000                                                                      --------->ATHB12                                                                     <---------YAB1                                                                     <---------AHL20(2)                                                                  --------->ARR11(3)                                                                  --------->ICU4                                                                  --------->AHL20(1)                                                                  <---------ARR11(3)                                                                  <---------AHL20(1)                                                            --------->HSFB2a(2)                                                            --------->LBD16             --------->LBD16                                ------>ZmHOX2a(1)          <---------MYB55(2)                                <---------HSFB2a(2)          --------->MYB46(3)                               <---------LBD16         ------>MYB83                                     ----------->RAV1(2)         ------>MYB46(1)                               --------->At4g35610         -------->P         --------->ABI4(2)          <---------At4g35610 ---------HVH21          <---------ANAC58             --------->MYB52(2)        <------------CBF ---------TGA1           <---------ANAC58           <---------MYB52(1)--------->ATHB51 ----->YAB1------->GAMYB<---------DEAR3(1)          --------->DOF5.7(2)<------------CBF          <---   cgtcactctccaacccccaaaactcttcggtgctacttgcaagttgcaaacgacgttagctcctggaaaatattattgggcctattgggcttcttatatt  25843100         --------->ATHB51         <---------AHL20(2)         -------->ATHB1         -------->HAHB4         --------->ATHB12         <---------ICU4        <---------ATHB51        --------->ICU4        <---------YAB1      --------->YAB1     <---------AHL20(2)                                                        --------->AHL20(2)     --------->AHL20(2)                 <---------YAB1                    <---------YAB1    <--------   <----------DOF2              <---------AHL20(2)                        --------->ICU4<----------DOF2 --------GT1                  <----------DOF2                        --------->YAB1  <-----------GT1   atccactttaattattggtccattttgggcttcttttattgtattattcacaacgagataactccatctatgcataatgcttaaaataaactttattttt  25843200     <---------AHL20(2)    <---------WOX13(1)  <---------ICU4  --------->ATHB12  -------->HAHB4  <--------ATHB1  --------->ATHB51 --------->AHL20(2)                 <---------WOX13(1) <----------DOF2             <---------YAB1 <---------AHL20(2)               --------->ATHB12     <---------DAG2           --------->AHL20(2) --------->ICU4                  <---------AHL20(2)   <---------ANAC58          <---------AHL20(2) -- <---------ATHB51               <---------WOX13(1)    <---------ANAC58         --------->AHL20(2)<--- -YAB1--------->ATHB12   ---------->DOF2  <---------YAB1              --------------->AtSPL8   ------   gaaataattgattacagtatgtttctgtaaagtaattgattgttctaattcgaattgctttttcttcaaaacattgtacaaatttataaatacaatgcca  25843300                                                        <-----------RAV1(2)                                                       --------->ZAT14                                                  --------->MYB46(3)                                                  <---------ATHB12                                                 -------->P                                                 ------>MYB83                                                 ------>MYB46(1)                                                ------>MYB46(1)            --------->ARR14(2)                  ------>MYB83            <---------ARR14(2)                <---------MYB55(2)            ------->TEIL                      --------->MYB46(3)           <---------CCA1(2)                 --------->ANAC58       ------>MYB83                          --------->ANAC46      <---------ZAT14                  <       ------>MYB46(1)                       --------->ANAC58      --------->ZAT14            <------     <---------MYB59                   <---------WOX13(1)  <------ZmHOX2a(1)                 <------- ------->ANAC46          <-------TEIL-------->HAHB4--------->AtMYB61                    <---------DAG2 ------ALFIN1    ---------->DOF2     --------->ATHB12  <---------ZAT14                  <----------DOF2 ----->RAV1(1) ----------->HVH21    --------->ICU4<---------MYB55(2)--------->ZAT6   ------>NtERF2 <-   cacagaacctaatgtatctgaaaggggtccattgaaaaatgatggacacccaaccactacaggagtctctacactattgtgtaagggcgactttttttat  25843400             <----------DOF2   <----------ID1             <---------DAG2    <---------YAB1             --------------->AGL15             <---------------AGL15            <-----------------AGL2          <-----------GT1--------->AHL20(2)          --------->At4g35610 <<<<<<<<GATA-1     ----------->GT1         <---------TOE2(3)     <----------DOF2 ---AHL20(2)<-----------------AGL3      <----------DOF2        --------->GLK1(2) --AHL20(2) <-----------------AG     --------->ARR11(3)        <---------ARR11(3) ----------GT1     <---------TOE2(3) <---------ARR11(3)       <---------GLK1(2)                 -----   ttatctatctaataactttttatggaaaaaaatacgataaatcttttaggctattagatgaacagaatcttttgggtttttttttttttttgttcaaata  25843500  Previous    Next  AGI:  At1g68790.1    Description:  LINC3 (LITTLE NUCLEI3). similar to LINC2 (LITTLE NUCLEI2), protein binding [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42073.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74873.1); contains domain PD023692 (PD023692) Range:  from: 25838372    to: 25842982    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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