Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <------MYB46(1)                                                 <------MYB83     <---------TOE1(2)          <-------                                               <--------P         <---------TOE2(2)          <-------                                             <-----------RAV1(1) ------>ZmHOX2a(1) --------->ANAC46 -----------RAV1(2)                       <-------TEIL     ------>ZmHOX2a(1)       --------->ANAC58 --------------->AGL1                ====================RAV    --------->TOE2(2)  --------->ANAC58 >ZmHOX2a(1) <------ZmHOX2a(1)       <-----------RAV1(2) --------->YAB1        --------->AtLEC2   <--   ggccagaagaagtaaggactaagtgggattgtgccatgtccaggtacatgttggtccaatcctaatcctatgttcttctccatccacacaaacttgagta  25761500                                --------->ZAT6                              ------>MYB83                              --------->MYB52(1)                              ------>MYB46(1)                             --------->MYB55(1)                            <---------MYB59                            <---------MYB111(1)                            --------->AtMYB61                            <---------MYB55(2)                            <---------MYB46(2)                            <---------MYB111(2)                            <---------MYB52(2)                           --------->ANAC46                         <---------ALFIN1                   <---------ANAC58            --------->CCA1(2)                   <---------ANAC58           --------->ARR11(3)       <---------GLK1(1)--------->MYB46(3)    <---------ARR11(3)     --------->ATHB12 --------->REM1(1)   ---------->DOF2                                   <-------- --ANAC58     ----------->RAV1(2)   --------->ANAC58                  --------->CCA1(2)    --------->ARR11(3) --ANAC58     --------->At4g35610   --------->ANAC46           --------->ZAT6            --------->GLK1(2) -------ALFIN1<---------At4g35610   --------->ANAC58      ----------->GT1            >>>>>>>>>TBF1   ccactcttgatttctcatctggcttcaccacctaacacaaacaacaaagatttgtgggttttgtaacacaagagacaagaagatgaagaagaatatgttg  25761600                                                                             --------->At4g35610                        --------->ALFIN1                                     --------->ZAT2                      <---------ANAC58                      <---------DEAR3(1)                      <---------ANAC46                     <---------At4g35610               <-------GAMYB  --------->ETT(1)         <-----------HVH21     <---------At4g35610              --------->MYB52(2)                ----------->HVH21            <---------ZAT2       <--              <-----------RAV1(1)               --------->WRKY38(1)     <---------LBD16           <--     <----------DOF2<---------ZAT14            <---------MYB52(1)<---------ANAC58              <-----    --------->TOE2(3) <---------ANAC58        <---------At4g35610<---------ANAC58         <---------YAB1 <-----------GT1 <---------ANAC46             --------->LBD16 --------->At5g28300         --------->ICU4 ---RAV1(1)   <---------MYB46(3)            <---------LBD16--------->At4g35610       <---------ZAT6 <   tttttacctttattgtttgttgtggagtgttgtcggaagtatcaattccggtgactgtttcagcggtgagtgtctctggagctgctagagttatgatttt  25761700                           <---------ANAC58                       <---------ANAC46                     <---------MYB46(3)                   <---------ANAC58                   <---------ANAC58                   <-------GAMYB                  <------MYB83         --------->CCA1(2) <---------ANAC58 -------ANAC58    <---------MYB46(3)                                                      --------->At4g35610 -------ANAC58   --------->MYB59                                                  ---------->DOF2 ------GT1       <---------AtMYB61                   ----------->HVH21        --------->At4g35610 ---------MYB52(1)<------MYB46(1)           <------ZmHOX2a(1)                 --------->CCA1(2)   ccgttttacagagatgggtttggttgtttgggtatggaacaatggaggagaagcagtgatggagagttttggatgttgagagatgaaagaagagcagagg  25761800                                                                                    --------->ARR14(1)                                                                                    --------->CCA1(2)                                                                                   <---------ARR14(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                   --------->ARR11(1)                                                                                   --------->ARR14(2)                                                                                 ----------->ARR10                                                                               <------ZmHOX2a(1)                            <---------YAB1                          <---------ARR14(2)                       --------->TGA2(1)                            --------->ARR14(2)              <                       <---------TGA2(1)                  --------->GLK1(2)  --------->ANAC58       <                       --------->bZIP60(1)               --------->ARR11(3)  <---------TOE2(3)      <                       <---------bZIP60(1)               <---------ARR11(3)  --------->ANAC58  *TSS<-                  --------->YAB1               <<<<<<<<<<<<<<<<<LFY --------->GLK1(2)  ----------->GT1   gaagtagaagagagtgccattgatgacatcatttttgtgttttctcagagaacaatggagattttgtgagaatatggataaggaagatatggtcacattt  25761900                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                           --------->TOE2(3)                                                          <---------ICU4                                                          --------->ATHB12                                                          <--------HAHB4                                                          --------->YAB1                                                         <---------ATHB12           ---------->DOF2                      <---------ANAC58  --------->ALFIN1                              <---------ANAC58 ---------ANAC46                        <----------DOF2  --------->ICU4 ---------ANAC58                        --------------------->WRI1   --------->WRKY18(1)          <-- ---------ANAC58                <---------AHL20(2)       <---------YAB1                 --------->YAB1 --------MYB46(3)          --------->YAB1     <<<<<<<<<<WRKY63<---------AHL20(2)       <---------YAB1   ttgggtggagtttcaaagtagtttgactatcaaatttatgggctttgttgacttggcccatcattaaatgggtcaagaatacagagtttattataagccc  25762000                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                   --------->HSFB2a(2)                                           <---------ARR11(3)                   <---------HSFB2a(2)                                           --------->ARR11(3) -         --------->TOE1(3)                                                       <-----------ARR10  -        ----------->RAV1(2)   <----------DOF2--------->GLK1(2)               ---------->DOF2        < -------ATHB12  <----------DOF2             <---------GLK1(2)   <---------LBD16  <---------AGP1------   atgaatacaaacctgaagctttgagaagtagacttttaaaaatacagactctgtttcaagtattttcgagggactaattcaaagatctcaacatataagt  25762100              <---------AHL20(2)        --------->YAB1     <---------CCA1(2)   --------->YAB1                                                      <----------DOF2 --------->ATHB12   <---------ICU4                                             <-----------GT1         <---------YAB1 -------->YAB1--------->AHL20(2)         --------->ANAC58 <---------AHL20(2)    <---------ZAT6 -------->WOX13(1)            ----------->HVH21<---------AHL20(2)--------->TOE2(3)    --------->ICU4 -----------GT1        ----------->HVH21 --------->ANAC58 --------->AHL20(2)  <---------ANAC46 --->ICU4    --------->AHL20(2)      ----------->RAV1(1)  XXXXXXXXXXXXXXXXXXXX>MIR1886.3        -----   attaatcatatcatatttaattcgaatgacatttgacagccacaagtatttatacaaaaattaaaaacctcatctttgtttagtgttcatgatttgatca  25762200                                                                                --------->ZAT18                                                                                --------->SPL7                                                                     <-----------GT1                                                                    -------->HAHB4          <---------AHL20(2)                                       --------->ICU4         <---------AHL20(2)                                        <---------YAB1         --------->AHL20(2)                                      --------->YAB1 <---------ZAT14     --------->AHL20(1)                 --------->YAB1          <---------AHL20(2)        --------->ARR11(3)     <---------AHL20(1) --------->AHL20(1)                      --------->AHL20(2)        <---------ARR11(3)     <---------AHL20(2) <---------AHL20(2)                      <---------YAB1<---------SPL7    -----     --------->AHL20(2) <---------AHL20(1)                     --------->AHL20(1) --------->At4g35610    --------->AHL20(2)  --------->AHL20(2)                     --------->AHL20(2) <---------At4g35610    <---------ATHB12   --------->AHL20(2)                      <---------AHL20(1)--------->ANAC46 ----->DOF2     <---------ANAC46     --------->WOX13(1)<-----------GT1      <---------------AtSPL8   aagtcaataaatttttttgtgtgaaataaatttttgtattaatcaaaacacaatttttaacaaaatataattatcgatattgtacgctgcaagatgtcct  25762300                                        --------->DAG2                             <--------ATHB1                             <---------ICU4                            <---------ATHB51                                                <--------                            --------->ICU4                                                --------->ANAC55(2)                            --------->AHL20(2)                        <---------GLK1(2)   <---------ANAC55(2)           <---------AHL20(2)-------->HAHB4 --------->ZAT18         <---------YAB1    <-----------HVH21           --------->AHL20(2)--------->ATHB51   <----------DOF2   --------->ANAC55(2)--------->TGA2(1)          <---------AHL20(2)<---------ATHB12<---------ZAT18       <---------ANAC55(2)--------->bZIP60(1)      <---------AHL20(2)    <---------AHL20(2)<---------ANAC46<-----------HVH21      <---------bZIP60(1) ->ZmHOX2a(1)     --------->YAB1       ---------->DOF2 --------->AHL20(2)     <-----------GT1   <----   caatttgttttatttatttatcaaaaacaaataattgttgagaaagtggcctttacattatatatgtcacatgattctttttacattatgtcacatgatt  25762400  Previous    Next  AGI:  At1g68590.1    Description:  plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative. Identical to Plastid-specific 30S ribosomal protein 3-1, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SX22;GB:Q8LD87); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT5G15760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49311.1); contains InterPro domain Ribosomal protein, PSRP-3/Ycf65; (InterPro:IPR006924) Range:  from: 25761067    to: 25761895    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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