Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->At4g35610    <---------At4g35610   <---------ARR14(2)   --------->GLK1(2)   <-----------ARR10   ------->TEIL   --------->ARR14(2) -------->ANAC58 -------->ANAC58                             --------->At4g35610   <---------ICU4 -------->ANAC46         --------->ZAT14     <---------At4g35610--------->REM1(1)            <-------   acacgaatctgactaatttcatataagtgaagtcaaaccccagtctcagcacaaattttggttccttcatcaagacgattcaatccagcgttcttatgac  25602600                                                                                --------->ICU4                                                                              --------->YAB1                                                                             --------->MYB46(3)                                                                             <---------ATHB12                                                                            ------>MYB46(1)                  --------->At4g35610                                       ------>MYB83       <---------ATHB12        ----------->RAV1(1)                          -------->P --YAB1--------->ICU4         --------->REM1(1)                     --------->AHL20(2)              <   tctcttgcaatgagtttataagctcaatcgctacaacacataagaccaaaattttcaaactcaatttcaaaaaaatccaaccattatcaacaaaatgaaa  25602700                                     <---------------AGL15                                    <------NtERF2                                    ----------------->AGL1                                    ----------------->AGL3                                   ------>NtERF2                                   ----------->RAV1(1)                                  --------->RRTF1(3)                                  --------->RRTF1(2)                                  --------->RAP2.3(3)                                  --------->DEAR3(1)                                  --------->RAP2.3(2)                                 <------NtERF2                                 --------->RRTF1(1)               <------ZmHOX2a(2)                                 --------->RAP2.3(1)              =================================HOX2a_HOX2a                                 --------->ATERF1(1)       ----------->RAV1(2)                                 --------->ERF1            --------->At4g35610                                 --------->ORA47(2)        <---------At4g35610         --------->At4g35610    <---------RAP2.3(1)        --------->ZAT2     --------->ARR14(2)         <---------DEAR4(2)         <---------ZAT2     <---------ARR14(2)         <---------ATERF1(1)       ------->TEIL           --------->ZAT14     --------->GLK1(2)          <---------ORA47(2)       <-----------RAV1(2)     <---------ZAT14 ----    <---------GLK1(2)          <---------DEAR3(1)      --------->ANAC58          <---------At4g35610-   <------NtERF2           <---------ANAC58            --------->ANAC46      --------->ALFIN1    <---  --------->LBD16          <---------ANAC58            --------->ANAC58   <---------TOE2(3) <------ZmHOX2a(1) --------->LBD16       <---------ANAC58      ============================HOX2a_HOX2a  <---------ZAT14 ---------LBD16        <---------ANAC58      <------ZmHOX2a(1)   --------->ARR11(3)   --------->ZAT14   tcgccggaatccgatgaagaagattacttacgagcggcgccataagaggaagcatagacgcagctgagatcaagatgaggttgagcagtgaagaggatga  25602800        <---------------------WRI1    <---------ARR14(2)                                                            --------->AtMYB61    --------->ARR14(2)                                                          ------>NtERF2   <---------GLK1(2)                                                           --------->DEAR3(1)  --   <---------ARR14(2)                                                       --------->ANAC46  -------   --------->ARR14(2)                                                       ------->GAMYB  <---------ANAC58 ----->bZIP60(1)           <-------TEIL                                  --------->WOX13(1)<---------ANAC58 -------->ETT(1)          --------->CCA1(2)                          --------->YAB1<-----------HVH21 ------bZIP60(1)   <----------DOF2                 <----------DOF2<----------DOF2--------->MYB46(3)--   tgtcggaatcggcgaggctatctttgagatacacgagcgtccattgaagagcgcgtttactacattcgctttcatcaatcgccaccatcacttgcttcat  25602900                                                                                                    -                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                     <---------bZIP60(2)                          <--                                                     <---------ANAC46                           <----                                                     <---------ANAC58                          ------                                                     <---------ANAC58                        --------                ------>NtERF2                     ----------->HVH21               ===================  <---------DAG2--------->LBD16                 --------->At4g35610               ---------->DOF2----  <----------DOF2            <<<<<<<<<TBF1      <---------At4g35610        <----------DOF2  --------- ------->ANAC58--------->ANAC58           ------>ZmHOX2a(2)                ========================== -->REM1(1)    --------->ANAC58       ----------->HVH21                 --------------->AGL15<------- ------->ANAC58--------->ANAC46     --------------------->WRI1    <---------GLK1(1)      --------->ICU4   cacgcttttctcttcttccgccatggttttcttcttctctgtgatcgctccgatgacttggtgatttgatttctcttctttgagaaaagtcagaatgatg  25603000 -------->ALFIN1 -------ANAC55(1) -------ANAC58 -------O2 ------>O2--------->REM1(2) -------bZIP60(2) ------>ANAC55(2) -------TGA1a -------ANAC46 ------>TGA1a -------ANAC55(2)                       --------->GLK1(2)                      <---------ANAC58 -------ANAC58                     --------->LBD16                             <---------ANAC46 -----TGA2(2)                     <---------HSFB2a(2)                          <---------ANAC58 ----->TGA1                       --------->HSFB2a(2)                       --------->GLK1(1) ->YAB1   <---------ZAT14    <-------TEIL                               <---------ANAC58 =======bZIP_DOF        <-------PIF5   --------->ARR11(3)               <---------ANAC58         ---- ------->STF1       *TSS------->PIF5   <---------ARR11(3)               <---------ANAC46     -------- >ICU4    --------->ZAT14   <---------ARR14(2)                         <---------LBD16      <-------- =======bZIP_DOF<------ZmHOX2a(1)<---------LBD16                 ------------>CBF          <-------TEIL --ICU4  <---------ANAC46   --------->ARR14(2)  -------->ATHB1   ------>ZmHOX2a(2)      --------->At4g35610   acgtgtcgattgtgtagaggaaggcacgaggttcttctggagattttgaattattcgatgggcctgatccaatttcgggtttcttgtatcaggtccagag  25603100                                                      *TSS                                                      --------->ARR14(2)                                                 <---------ANAC46                                                <------NtERF2                                                --------->ATERF1(1)                                               <---------ERF1                                               ------>NtERF2                                               <---------RAP2.3(1)                                              --------->ATERF1(2)                                              <---------RRTF1(3)                                              <---------RAP2.3(2)                                              <---------RAP2.6(2)                                              <---------DREB2C(2)                                              <---------DEAR3(1)                                              <---------RAP2.3(3) ------>MYB83              ---------                                              <---------ANAC46    -------->P      --------------->AtSPL3                                              <---------ATERF1(2) ------>MYB46(1)<---------DOF5.7(2)                                              <---------RRTF1(2)<---------MYB59------>ZmHOX2a(1)    -                                  <---------ARR14(2)  <---------ARR14(2)      --------->TOE2(3)     <                              <---------At4g35610--------->DEAR3(1)        --------->ARR14(2)-------- ------>DOF2                ---------->CDC5  <---------LBD16  --------->AGP1  --------->TOE1(3)    <- ->LBD16             <------------CBF    <------------CBF  --------->ANAC46<---------ARR14(2)-------- -HSFB2a(2)        <---------YAB1 --------->ARR14(2)----------->GT1    ------>ZmHOX2a(1) --------->ANAC46   aaagcctataacctcgttgttcttattggctcatcggattccaaattggcggcgaggttacacagacctactcctcaaatccttaacgtactcgtaagcc  25603200                                                             <---------ICU4                                                           --------->ARR11(3) >SPL7                                                     --------->GLK1(2) -------->ARR14(2)        <---------AHL20(2)               <-----------ARR10 ---------ARR14(2)------>ZmHOX2a(1)                        <---------ARR11(3) ->ANAC58   <----------DOF2                          ----------->GT1                         -------- --------CCA1(2)  ----------->GT1             --------------->AGL15                          -------- ->ANAC58<-----------GT1  --------->AHL20(2)  <---------------AGL15   <----------DOF2      <---------ARR11(3)   catatccgatttttcttttcctgtaaatttaaattttcttacaaatttctcaaaatcgcaaaatctttgcctctttcttctctaatcgaactaaatctta  25603300                                      <----------DOF2                    <---------LBD16                   <-----------GT1 ------->TEIL                         ----------->RAV1(2)         <---------WOX13(1)  <---------MYB52(1)                  <---------ANAC58       --------->ATHB12   <---------LBD16                        <---------ANAC58                   -      <---------YAB1    <---------ARR14(2)                   <---------ANAC46                 <------    <---------At4g35610 --------->ARR14(2)<----------DOF2    <---------ANAC58        <---------TOE2(3) <----------DOF2<XXXXXXXXXXXXXXXXXXXXMIR832-5P               <---------ANAC58        <---------TOE1(3) ->TOE2(3)   <---------WOX13(1)   <---------CCA1(2)         --------->ZAT2 --------->LBD16    <------ ->TOE1(3) --------->ATHB12 --------->LBD16                 <---------ZAT2--------->LBD16<----------DOF2   aaactttgctgattgattgattttcgattccggtatgtatctttctttagttttcaattcgctgcttgcttcttccctgggaattttagggtttttaggg  25603400                                                                                            ---------                                                                                       <---------YAB1                            <---------DAG2                                             <---------WOX13(1)         <---------YAB1     <----------DOF2                                        <--------P ---------->GT1        <---------ANAC46                                     <---------ARR14(2) ---TOE1(3)            <---------ANAC58                    <------NtERF2    --------->ARR14(2) ---TOE2(3)            <---------ANAC58           <---------DAG2 ----------->GT1  <-------GAMYB   ttttgtaatttccgattgaaaagtttcgtgctttacgagtctctgtaactcaatttttggcagggagaagaaaaatggtatctgggttgattaatgagaa  25603500  Previous    Next  AGI:  At1g68300.1    Description:  universal stress protein (USP) family protein. similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42154.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Universal stress protein (Usp) (InterPro:IPR006015); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 25601994    to: 25603020    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g68310.1    Description:  Identical to UPF0195 protein At1g68310 [Arabidopsis Thaliana] (GB:Q9C9G6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50845.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68557.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82886.1); similar to Os04g0595200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053732.1); contains InterPro domain Protein of unknown function DUF59 (InterPro:IPR002744) Range:  from: 25603154    to: 25605126    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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