Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------AHL20(1)            --------->At4g35610             --------->AHL20(1)            <---------At4g35610 <---------ICU4         ---------->DOF2       <---------YAB1          --------->AHL20(2)        --------->YAB1      <------ZmHOX2a(2)          <---------AHL20(2)<---------GLK1(2)         --       <---------ATHB12    --------->ARR11(3)<---------AHL20(2)    --------->ANAC58               <--     --------->WOX13(1)    <---------ARR11(3)--------->AHL20(2)    --------->ANAC58      <---------WOX13(1)   <---------ATHB12  --------->REM1(2)      <---------AHL20(2)   ---------->DOF2      <---------TOE2(3) --->ZmHOX2a(2)     --------->ALFIN1        --------->AHL20(2)--------->AtLEC2        <---------YAB1   tccgaatcaatgaaagcagcctgtggagagatcatcaatactcaaatttattttgaattaattcatccaaagccagaaactttcaattgagattgatact  25483800                                                                                            <--------                                                                                          -----------                                                                                         --------->DREB2C(2)                                                                                         --------->DEAR4(1)                                                                                         --------->At1g77200                          --------->GLK1(2)                                              <---------ETT(1)                          <---------ARR14(2)                                     --------->YAB1                          --------->ARR14(2)                                    <---------AHL20(2)<-- <---------WOX13(1)      <---------GLK1(2)                     --------->DAG2  --------->AHL20(2) --- ------->ATHB12 <---------LBD16                               ---------->DOF2  <---------AHL20(2) --- -------YAB1 --------->At4g35610                   <---------HSFB2a(2) <---------MYB52(1)--------->DEAR3(1)   atgattgaaattagcatctgtggaacagaatctggattcaaaaaaaaaaaactcgagaaacaaaaaaagttctgttttttttttaataacaccgacacag  25483900                                                                                      ---------------                                                                                      <--------------       <---------GLK1(1)                                                             ----------------       <------ZmHOX2a(2)                                                             ------>ZmHOX2a(2)      --------->ARR11(3)                                                             <---------------      <---------ARR11(3)                                                             ----------------     <---------GLK1(1)                                                              <------ZmHOX2a(2)     --------->GLK1(1)                       <-----------GT1                       <---------ARR11(3) -ALFIN1------>ZmHOX2a(2)         --------->ZAT14                           <---------YAB1 >RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <----------DOF2      -------- -------ZAT14                     <---------ZAT14 --------->ANAC46------->TEIL     --------->AGP1 ------>ZAT14                    <<<<<<<<<<<<<<<<<LFY             <-----------GT1  <---------AGP1 ------->DOF2         --------->ANAC46 <---------MYB46(3)    <---------ANAC46      --------->ARR11(3)   taaagagagatctcagacttcatcacagaacaagagaacagtggttttatccacaaaatcgtagcatgtaactcctttctgattagatctaaaaatagca  25484000                                    --------->ANAC58                                    --------->ANAC58     >>>>>>>>>RAP2.2 <---------ARR11(1)   <---------ARR11(3)<---------ARR14(2)   --------->ARR11(3)--------->ARR14(2)                                    <---------DDF1  --------->CCA1(1)  ------->TEIL   ----------->RAV1(1)                  --------->DEAR3(2)  --------->RVE1(1)  --------->GLK1(2)                                  <---------DOF5.7(2) >AGL15              <-----------ARR10                                --------->DOF5.7(2) -AGL15             <---------ARR14(1)    <---------ICU4             <-------GAMYB ->AGL2      ---------->DOF2        --------->ANAC46              <---------At5g28300 --AGL3   --------->ANAC58      --------->ANAC58               <---------ANAC58 ->AGL3   --------->ANAC58      --------->ANAC58     --------->GLK1(2)<---------MYB52(1) --->GT1---------->DOF2         --------->ANAC46 <------NtERF2 <---------ANAC58           <---------GLK1(2)   aaaaatatctaaaagcaaagccgaatctaagaacacaccagcaaaaatggccgagaatcgagaatgcttaccgttaccgacattgtcgaagtgattctct  25484100                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                               <-------TEIL                                                                           --------->ANAC58         --------->ARR11(3)                                                --------->ANAC58  --------         --------->GLK1(2)                                                 <---------------AtSPL8         <---------ARR11(3)         --------->GLK1(1)                      <---------------AtSPL3   <----------ID1       ---------->DOF2               <----------DOF2 ----------->HVH21      ========   ----------->GT1   --------->ANAC46                 ------>ZmHOX2a(1)    --------------->AtSPL8   caagagcgaaaaatctcgagtacgcgtaaagaatagggatttcaatatttcaagtccttttgagtctcaaaactgacaaggtacgtttttaattttaaag  25484200                                                                       <------------CBF                                             --------->ANAC58     <------------CBF                 --------->TGA1a             --------->ANAC58    --------->ATHB51                 <---------O2<---------ARR14(2)                  -------->ATHB1                 <---------TGA1a           *TSS                 <---------YAB1------>ZmHOX2a(1)             --------->AtMYB61         <---------ANAC55(2)    ------>ZmHOX2a(1)  <-----------GT1--------->O2--------->ARR14(2)              ------------>ATHB5 -->DOF2  <-----------GT1    --------->GLK1(2)   <------------CBF--------->YAB1<---------TOE1(2) ==========================bZIP_DOF<-----------HVH21         --------------->AGL15          ---------   tgatttacatttcaacctcacgagtcaagagaatatgggtcatgtgaacgaaattgtgaagttcctattattgtattgtcctatgaacaaaacaaaaaga  25484300                                               <-----------GT1                                           <----------DOF2                                          -                                           <---------DAG2                                           -                                          <---------ANAC58                                       ----                                    <---------YAB1                                             <-----                                <---------ANAC58                                         <---------ARR14(2)   <----------ID1               <---------ANAC58      <---------ATHB12<----------DOF2    --------->ARR14(2) ->DOF2  ---------->DOF2   <----------DOF2<---------ANAC58------>ZmHOX2a(2)            ------->TEIL--   agaagagaacaaaaagagtaatagctattctttgtcttgtgatggctttttgccaaatgatccatgaggtctctttctttgtacatatgtatatatgcct  25484400                                             <---------ARR11(3)         --------->YAB1                                             --------->ARR11(3)         -------->ATHB1                                       --------->YAB1                   <---------ICU4                                  --------->ANAC58                      --------->ATHB12        ---------->DOF2           --------->ANAC55(2)                  --------->ICU4   ----------->RAV1(1)            --------->ANAC58          ====================================HOX2a_HOX2a -------->TOE2(3)                 --------->ANAC55(1)       ------>ZmHOX2a(2) ------>GAMYB                     <---------ANAC55(2)     --------->ARR11(3) ----->MYB52(1)             --------->AHL20(2)            <---------ARR11(3) <---------ANAC46 ----MYB59     <----------DOF2    ----------->GT1  ---------->DOF2     <---------ATHB12          <<<< ------->MYB46(3)           <---------AHL20(2)<------ZmHOX2a(2)        <---------YAB1    <------ZmHOX2a(1)   aaccacaacaaaaatcgcttcatcgaatatttaaacacgtataataagatcacaaaagatgatcttcagcctaatcattgtggagatgggaggagtttct  25484500                                                                <---------ANAC58                                                                <---------ANAC58                                                                <---------ANAC46                                                             <---------TOE2(3)                          <---------AtLEC2               <----------DOF2                          <---------ANAC46            <---------ARR11(3)                          <---------ANAC58            --------->ARR11(3)      <------NtERF2       <---------ANAC58      <---------At4g35610 <<<<<TBF1  --------->AHL20(2)    <-----------GT1  --------->YAB1          --------->AHL20(2)   -----   tcttcggcatcgattaatataccaagttgcatgttttctcagtcccatgccgatgagaactttgaggcttgtgagcattatatatgttatgacgaataag  25484600                                                    --------->ZAT14                                                    <---------ARR14(2)                                                    <---------ZAT14                                                    --------->ARR14(2)                                                 <---------ANAC46                                                 <---------ANAC58                                                 <---------ANAC58                                               <---------ANAC46                                             <---------ZAT2                 --------->At4g35610                                             --------->ZAT2                 <---------At4g35610         ----------->RAV1(1) <---------ANAC46<---------At4g35610            ----------->RAV1(2)        --------->ANAC46   <---------ZAT14   --------->At4g35610         <------ZmHOX2a(2)      --------->ANAC46     --------->ZAT14  --------->ALFIN1        <---------LBD16                --    ------>MYB83           --------->ZAT18 <---------ZAT14        <---------ZAT14                ----    ------>MYB46(1)        <---------ZAT18 --------->ZAT14        --------->ZAT14                ---- ---->At4g35610           --------->ALFIN1 --------->ZAT18  <-----------HVH21      --------->PCF5----   atgaccatccacaacattctccatgggagtggactgtatggcaagtgtgctgcgtatactggtgtcagtactcggatcacctgaggtcccaaaatataca  25484700  Previous    Next  AGI:  At1g67950.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42389.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 25482376    to: 25484243    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g67960.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO42391.1); contains InterPro domain Protein of unknown function DUF747, CMV receptor (InterPro:IPR008010) Range:  from: 25484315    to: 25487925    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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