Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                               <-----                                           ---------->DOF2                             <---------AtMYB61                                        <------NtERF2                                  --------->ALFIN1                                       ------>NtERF2                                   <---------DEAR3(1)                                   <---------MYB46(3)                               <-----------RAV1(1)                                   ------>ZmHOX2a(2)                           <---------MYB46(3)----                                 <---------ARR14(2)                           --------->ALFIN1-------                            <---------ARR14(2)                             <---------DEAR3(1) -------                            --------->ARR14(2)                          ----------->HVH21 <---------AtMYB61       <---------At4g35610 ===============HOX2a_HOX2a                 --------->At4g35610 <---------DEAR3(1) ----ZmHOX2a(1)   --------->ALFIN1 <---------DEAR3(1)    <---------ANAC46--------->MYB52(1)<---------MYB46(3) -->LBD16      ===========================HOX2a_HOX2a   <------NtERF2 <---------At4g35610 --------->ALFIN1 --ANAC46      <------ZmHOX2a(1) --------->ARR14(2)   <---------DEAR3(1)----------->TGA1<---------MYB46(3) -LBD16--------->At4g35610 <------ZmHOX2a(1)    --------->GLK1(2)  <------ZmHOX2a(1)<---------AtMYB61   ggagaaggaagatgagaggaatggggagaggattggatcggtggcaaaagaatcgagcggcgaagaagaggaagatgacggtgtttgtggtggtggtgcg  25480900   <------ZmHOX2a(1) ------NtERF2 ------->LBD16 -------ANAC46 ------>DEAR3(1) ------LBD16 ---NtERF2                                                                                        <-- -----RAP2.3(1)                                                  <---------REM1(1)               <--- ----DEAR3(1)      <------ZmHOX2a(1)                       --------->ICU4                    -------- ----->ATERF1(1) --------->ALFIN1                        <---------At4g35610                 <------- -->ZAT18       <------ZmHOX2a(1)        <-----------------------TaNAC69(2)        --------->ALFIN1 -->SPL7 <---------ZAT14          --------->ALFIN1 --------->CCA1(2)  <------ZmHOX2a(1)<---------ZAT18   ccggaggagagtgaagaaggaggagggtttttgaaggtggagagacgttgaagagatggagatgatggtgaaggagacgatggaggtagtgccatttttt  25481000                                                      ---------->DOF2                                                    <------ZmHOX2a(2)                                                   <---------ARR11(3) -------At5g28300                                  --------->ARR11(3) --------GT1                                      --------->GLK1(1) ->AHL20(2)                                     <------ZmHOX2a(1)                     *TSS --AHL20(2)                                  <-----------RAV1(2)         ---------->DOF2   ----------   tacagtttcaatctctacaggttttgaattttgcaatggcgattttagcaggagatcaaagcgatactcatttttcaaagttaatctctgaaacaccaaa  25481100                                                                                                <----                                                                                                <----                                                                                       <---------LBD16                                                                                      ------->TEIL                                                  <---------AHL20(2)               --------->ANAC46                                                --------->TOE2(3)               --------->TOE2(2)<---                                    <---------ZAT14                        <-------GAMYB       <-----                                    --------->ZAT18                       <------MYB83--------->MYB52(1)                             --------->ANAC46   <----------DOF2           <------MYB46(1)     -------               ---------->DOF2      --------->ZAT14                       <---------MYB46(3) -------- -------------->ANAC81----------->GT1 ------->TEIL--------->AHL20(2)  <-----------RAV1(1)--------->LBD16   aaaaaaaaaaaaaaactcaaagcgaagttatacgatagtgaaccggtctactttaatttctgtgtctgaattttgttggttatctacgaaccggaattat  25481200                                                                                              <------ -------------AGL1                                    ----------->GT1                         <------ -----YAB1                     <---------REM1(1)    ----------->GT1                           ------- ------ICU4            <---------REM1(1)     --------->ARR14(2)                          <---------ANAC55(2) ------GT1         <---------WOX13(1)        <---------ARR14(2)                 ------>ZmHOX2a(1)   - -->YAB1      --------->ANAC55(2)            ------->TEIL                    ------>ZmHOX2a(1)------- ->ICU4       <---------ANAC55(2)           <---------CCA1(2)        ------------>CBF    --------->ANAC55(2)   catttctggcatagtcaagtgatagatgtagtcatgtagggaatttgtatctggatgtgaaaaaaaaaaaaaacaattcctcctctaaatctcgtgatgt  25481300                                                             --------->AHL20(1)                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL20(1)        <---------AHL20(2)       *TSS                     --------->YAB1      <---------ANAC55(2)      --------->DAG2          --------->YAB1 ---TGA2(1)                 ------>ZmHOX2a(1)    <---------ZAT6 ---bZIP60(1)          <------MYB46(1)           <---------REM1(1)                      <---------YAB1 -->TGA2(1)            <------MYB83              <---------ANAC46                   <---------GLK1(2) -------->AHL20(2)  <------------CBF             ----------->GT1        <---------ARR11(3)         -- -->bZIP60(1)<-----------HVH21---------->DOF2 --------->ALFIN1   ----------->GT1 <---------WOX13(1)<-   cataaattatgtaaatgtcagagattggtcctaaaagttggccactaagtggtgtaagaataataaattgtcaatatcaattgactgattcttattgttc  25481400                                                                    --------->bZIP60(1)                                                                    <---------bZIP60(1)           <--              <----------DOF2                                    --------->AtLEC2                 <--           <-----------ARR10                                     --------->ANAC58      --------->GLK1(2)           <---------ARR11(3)                                    --------->ANAC58      <---------ARR14(2)           --------->ARR11(3)                          --------->TOE1(3)               --------->ARR14(2)          <---------CCA1(2)                            --------->TOE2(3)           <---------TOE2(3) <---------LBD16       <---------ANAC55(2)             <----------DOF2            --------->MYB52(1) ------->ARR14(2)      --------->ANAC55(2)  --------->DAG2       --------->bZIP60(2)   ------->TEIL --------ARR14(2)   <---------MYB52(1)     ---------->DOF2---------->DOF2 <----------DOF2        <---   atatacggacacaaatcttttcgttaagtgagtgttttgatcaaaaaaagttgaaaactttaaagccatgccatcactttggtctaacgaatccgatgga  25481500                                                                                              <------ZmHOX2a(2)                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                ----------->HVH21       ------>ZmHOX2a(2)                                                             --------->ARR11(3)        <---------GLK1(1)                                                        <-------TEIL                  --------->ARR11(3)                                                    <---------------AtSPL8            <---------ARR11(3)                                                   <---------ANAC46                   <---------AGP1                                                  <-------TEIL--------->At4g35610     --------->ARR14(2)                                                 --------->GLK1(2)                    <---------ARR14(2)                                                 --------->CCA1(2)           --------->DEAR3(1)------                                                 --------->ARR14(1)         <------NtERF2    --------          --------->ARR11(3)                    --------->ARR11(1)        <---------DEAR3(1) <-------          --------->GLK1(2)                     <---------ARR14(2)        --------->DEAR3(1)<--------   <---------ANAC55(2)                          --------->ARR14(2)       --------->ATERF1(1)<--------   <---------YAB1                             ----------->ARR10------>ZmHOX2a(2)      ------->TEIL ------HAHB4                               --------->TOE1(2) <---------ARR11(3) <---------ATHB12   -- -------ICU4                   <---------ANAC46 <---------GLK1(2)       <-----------HVH21<---------LBD16 ---ZmHOX2a(2)              <---------ANAC46  <---------ATHB12<---------At4g35610  <---------WOX13(1)   tcattacgagagcatcttgtggatgttgttgtgtctggttcagaaccaaagattcgggtacatgatctgacccgagtcgccgatgatggatctcggatct  25481600                                           --------->ATHB12                                          <---------YAB1                                      <------MYB83                                  ------>ZmHOX2a(2) --AGP1                              <---------AtMYB61                             <---------GLK1(1) --ARR14(2)                         <---------MYB52(1)                             --------->GLK1(1) ->ARR11(3)                        <-------GAMYB                                   <------ZmHOX2a(2) >ZmHOX2a(2)                  <---------YAB1 <---------WOX13(1)                   --------->ARR11(3) ->ARR14(2)              --------->DAG2 <---------ANAC46              <---------DOF5.7(2) --ARR11(3)     --------->CCA1(2) ------>ZmHOX2a(2)                  <---------WRKY12 -CCA1(2)<---------YAB1---------->DOF2<------MYB46(1)                <---------WRKY45              -- -ARR14(1)     <---------ARR11(3) <---------MYB46(3)            ---------->DOF2   <---------ARR11(3) -------->DOF2 --------->ARR11(3)<---------YAB1        <---------ZAT6<---------WRKY38(1)        <----   tgaaaggagttacgatagatataccaaaaggtatgatcgttggtgtgattggacctagtggaagtggaaagtcaacgtttttgagatctctgaatcgtct  25481700                <---------At4g35610              <---------WRKY38(1)              ------>MYB46(1)              --------->ZAT18                --------->TOE2(2)              <---------WRKY12               ------->GAMYB         --------->LBD16                    <---------MYB52(2)       <---------LBD16                      --------->MYB46(3)      --------->MYB52(1)                  <-----------GT1     --------->AtMYB61                 --------->CCA1(2)     <---------ALFIN1                 --------->ARR11(3)                                           --    --------->MYB46(3)                <---------ARR11(3)                                     --------    <---------MYB55(2)          --------->At5g28300  <---------TOE2(3)                       <-------    <---------ABI4(2)          ----------->GT1--------->MYB52(1)                             <-------  --------->PCF2--------->At4g35610   <-----------ARR10                               <---------DAG2 ------->HSFB2a(2)            <---------DEAR3(1) --------->TOE2(3)         <---------ZAT6    -------- ------DOF2   <---------ZAT14<---------ORA47(1)------>MYB83           <---------ANAC46<----------DOF2   ttgggaaccaccggagtcaactgtgttcttggacggtgaagatataaccaacgttgatgttattgctcttcgtcgtagagttggaatgctttttcagctt  25481800  Previous    Next  AGI:  At1g67930.1    Description:  Golgi transport complex protein-related. similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63146.1); similar to hypothetical protein OsI_019067 [Oryza sativa (indica cultivar-group)] (GB:EAY97834.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75955.1); contains domain PTHR13228 (PTHR13228) Range:  from: 25477803    to: 25481086    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g67940.1    Description:  ATNAP3 (Arabidopsis thaliana non-intrinsic ABC protein 3). Identical to Non-intrinsic ABC protein 3 (NAP3) [Arabidopsis Thaliana] (GB:Q9C9W0); similar to PGP7 (P-GLYCOPROTEIN 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G46540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70271.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Phosphate transport system permease protein 1; (InterPro:IPR005670) Range:  from: 25481333    to: 25482466    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version