Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ----------->HVH21                                       =========================bZIP_DOF                          <---------AHL20(2)          <---------bZIP60(1)            <---------REM1(1)          <----------DOF2--------->bZIP60(1)                          --      ------->TEIL       --------->AHL20(2)  <---------ALFIN1                                      -- <---------ANAC46        <---------AHL20(2)<-----------GT1      <---------ANAC46                ----- ----AHL20(2)    <---------ZAT6   ------->TEIL        <---------TGA1a             <---------YAB1----- --->AHL20(2)    ----------->GT1 <---------CCA1(2) ----------->HVH21 <---------ARR11(3)         -----   aatgtgtgtatgtgatgtagtgtcaaatttaatctgtatctctttacacacttctgacatgacattgtgtagatgttttagttgatgatagcacaaaacc  25394700       -------->HAHB4       --------->ATHB12       -------->ATHB1       <---------ICU4       --------->ATHB51       <---------AHL20(2)      <---------ATHB51      --------->ICU4      <---------YAB1   <---------AHL20(2)   --------->AHL20(2)                                                                           >>>>>  --------->AHL20(2)                                                                           <-----  <---------AHL20(2)                                                                    <---------ANAC58  <---------AHL20(1)                                                                    <---------ANAC46 ------->ATHB51                                                                    <---------ANAC58 ------->AHL20(2)   ----------->RAV1(1)                  <----------ID1            <---------AtLEC2 ---->YAB1    ----------->GT1                            <XXXXXXXXXXXXXXXXXXXXMIR426    <---------ANAC58 ---->TOE1(3)<---------TOE2(3)                <---------At4g35610                  <---------ANAC58 ---->TOE2(3)<---------TOE1(3)             ------>ZmHOX2a(1)                  <---------ICU4 <-------   ataatttaattattgaaggtaacaacataatatgctatctatctcctatgctgatgaagacgacaaatttccaaaaacaattcttgcatgtcttgtgtca  25394800                                                     --------->ATHB51                                                     <---------ICU4                                                    --------->ICU4                                                    <---------YAB1                                                  --------->YAB1                       --------->ANAC58                                                 <---------ATHB12  <---------ATHB12    --------->ANAC58 >>GRF7                                       <---------ALFIN1    -------->P       --------->TOE1(3) ------RAV1(2)        --------->ANAC58      ------->TEIL       <------ZmHOX2a(2)   --------->TOE2(3) ----HVH21            --------->ANAC58    --------->ZAT18 <-----------GT1<-----------HVH21--------->GLK1(1)   gggagtagccaattgtcaaaagactcgaaacaaaatgatacaaatgcaccactcataatttcacgatcaaccatttgtcacaaaacctcaagaaatctaa  25394900                              <---------TOE1(2)                        <-----------GT1                              <---------TOE2(2)                     <---------DAG2                             ------>ZmHOX2a(1)                      <----------DOF2               <-----------HVH21                          ------>ZmHOX2a(1)                      <---  <---------ANAC46 <---------ALFIN1     <-----------GT1------>ZmHOX2a(1)                         ----   aattgtgtctaaaacaatgtcacactgtttcctatgttttgtttaccacttggtttcctcctctattccgcttttaccatatgaaaccttgttttgtatt  25395000                                      ----------->GT1                                      --------->ANAC58                           --------------->AGL15                          ----------------->AGL2                          <-----------------AG                          <-----------------AGL2                          ----------------->AG                          ----------------->AGL1                          <-----------------AGL1                          ------------>CBF                          ----------------->AGL3                    <------NtERF2          <---------YAB1  <-----------------AGL3                <---------HSFB2a(1)      <---------At5g28300<---------At5g28300   --------->GLK1(2)--------->HSFB2a(1)     <-----------GT1    <-----------GT1    --------->YAB1       --------->HSFC1(2)    <---------ICU4 ------ZAT18     --------->TOE2(3)    --------->ANAC58         --------->DAG2         --------->YAB1 ----->ZAT18---------->DOF2<---------------AGL15     <---------ETT(2)    --------->TOE2(3) <---------ANAC55(2)   gcacaattcaccatgaaagcctaaatttaccatttttggcaagtaaaataatctgtcaacatcagaaggtgccaacttcaatactcaaacatcacatgaa  25395100                                              --------->YAB1                                          --------->YAB1                                      <---------AHL20(2)                                     --------->AHL20(2)                        ---------->DOF2--------->WOX13(1)               --------->ANAC58   --------->AHL20(2)                                             <---          <------ZmHOX2a(1)       <---------AHL20(2)                                            <----        <---------TOE2(3)        --------->AHL20(2)                                            <-----        <---------TOE1(3)        <---------AHL20(2)                                           -------     <---------AHL20(2)*TSS      <---------AHL20(1)  ---------->DOF2                        <-------- ------>MYB46(1)   ----------->RAV1(1)--------->AHL20(2)                               <---------AHL20(2) ------>MYB83  --------->ANAC58  --------->YAB1 --------->AHL20(2)                  ----------->GT1   accaaattttaaggaagaagccaacacaaagacaataaaattaatcaaaaataaacaaaggagagagacagaagaaacagagagagtagttaattccggt  25395200     <---------At4g35610     --------->At4g35610 ------MYB46(3)                         --------->RAP2.3(3) -----AtMYB61                        --------->ANAC46                           ------>ZmHOX2a(1) ----MYB52(1)                 ---------->ID1                                   --------->TOE2(3) -->LBD16             <---------ALFIN1------>NtERF2                      <----------DOF2      <------ -LBD16              --------->MYB46(3) ----------->RAV1(1)    <----------DOF2 --------->TOE1(3)   ggttttctgctcatctacttctatccaccttcgtcccttccgccccaaaattcaattctctcttcctttctctctctttctccttaaaaactctaacttt  25395300                                             --------->ZAT18                                             --------->ZAT14                                             <---------ZAT14                                             <---------ZAT18                                           ------>ZmHOX2a(2)         <---------O2                                          --------->CCA1(2)          --------->O2                                          --------->At4g35610        <---------TGA1a                                          <------ZmHOX2a(2)          --------->TGA1a                                         --------->ARR14(2)         ------>MYB83                                         --------->AGP1             ------>MYB46(1)                                         <---------ARR11(3)        <---------ALFIN1                                         <---------ARR14(3)       ------->GAMYB                                         --------->ARR14(3)       =============MYC_MYB                                         --------->ARR11(3)     --------->ANAC46                                         <---------ARR14(2)     --------->ANAC58       --------->At4g35610              --------->GLK1(1)       --------->ANAC58  <---------At4g35610  <---------DAG2   <---------GLK1(1)   <-----------GT1                         - ----DOF2   ---------->DOF2            ----------->ARR10    --------->YAB1    ------>ZmHOX2a(1)   ---   actcatctcatctccaaagtctcaacctttcttctctaatggagatctgcacttacttcaaatcacaacccacttggctcctcattctcttcgttctggg  25395400                                      ------>ZmHOX2a(2)                                      =========================HOX2a_HOX2a                                     ==========================HOX2a_HOX2a                                     <------ZmHOX2a(2)                                    <-----------ARR10                                    --------->ARR14(2)                                    <---------ARR14(2)          --------->AtLEC2                                    --------->AGP1              ------>MYB83 --------->LBD16                                    --------->ARR11(3)          ------>MYB46(1)         <-------TEIL                                    <---------ARR11(3)       --------->MYB46(3)  <---------ARR14(2)                                    <---------AGP1         ------>NtERF2 --------->AtMYB61         --------->YAB1         ------>ZmHOX2a(1)         --------->DEAR3(1) <---------At4g35610   <-   --------->YAB1           <---------ALFIN1              <---------ETT(1)   ------>NtERF2        ---   --------->TOE2(3)    <-----------GT1      --------->REM1(1)--------->AtMYB61  --------->ARR14(2)-- -------->WOX13(1)   <---------ICU4<---------CCA1(2)      ----------->HVH21 --------->DEAR3(1)    <-- ------>WRKY18(1)<-------TEIL   =============HOX2a_HOX2a------>ZmHOX2a(1)--------->TOE2(2)      -----   gtcaatctcaatcttcaaattcatcttcaccctcctcagatctttctacatctacttcctccgaccatccaaaaacctccgccgatacggttcatgggca  25395500                    <---------GLK1(2)                 --------->ANAC46                 --------->ANAC58                 --------->ANAC58             <---------MYB52(2)             <---------MYB55(2)            ------>MYB46(1)           --------->MYB52(1)           ----------->RAV1(1)          --------->AtMYB61         --------->MYB46(3)        --------->SPL7      <---------SPL7--------->ARR14(2)                                           --------->ANAC58      --------->LBD16--------->GLK1(2)                                           --------->ANAC58    <---------LBD16 <---------ARR14(2)                            --------->TOE1(3)           -------    --------->At4g35610                                           --------->TOE2(3)           ------- --------ICU4--------->DEAR3(2)                              ----------------------->TaNAC69(2) ------>ICU4------>MYB83               <----------DOF2    --------->ARR11(3)     --------->ANAC46 ------->YAB1--------->MYB46(3) <----------DOF2           <---------ARR11(3)   <---------ANAC58 -------ATHB12 --------->MYB52(1)     <---------DAG2  ---------->DOF2          <---------ANAC58 ---->WOX13(1)------->GAMYB---------->DOF2   <---------MYB52(1)<-----------GT1 <---------ANAC46    --   atcatcaccggaccaacagacggaatcggtaaagctttcgcctttcagttagcccagaaaggtcttaaccttatactcgttgctcgtaacccagacaagc  25395600  Previous    Next  AGI:  At1g67720.1    Description:  leucine-rich repeat family protein / protein kinase family protein. similar to kinase [Arabidopsis thaliana] (TAIR:AT2G37050.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37050.3); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46700.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (Inte Range:  from: 25390004    to: 25394736    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g67730.1    Description:  YBR159; ketoreductase/ oxidoreductase. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G24470.1); similar to putative 3-ketoacyl-CoA reductase 1 [Brassica napus] (GB:AAO43448.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 25395123    to: 25397273    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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