Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->At5g28300                --------->ANAC58                --------->ANAC46             --------->HSFC1(2)                --------->ANAC58     --------->YAB1               <---------LBD16      <---------ATHB12                                     <---------YAB1              <-----------GT1 --------->ANAC58                                         <-----------GT1 --------->At4g35610          --------->ANAC46                              --------->TOE2(3)    ---- <---------At4g35610   <-----------GT1       <---------HSFC1(2)           <-----------ARR10    <----- ->DOF2      <---------REM1(2)--------->ANAC58   <-------TEIL            <---------CCA1(2)     <-----   ctcatctaacttgttttcacggtataaacaatacgcctatcaagagaaacatccattagaccccaaaaaactttcaaatcttagcaaaattactatacct  25365700                                             --------->ATHB12                                           ----------->RAV1(1)                                         --------->ZAT18                                         <---------ZAT18        --------->ATHB12                                         <---------ZAT14     <----------DOF2                                 <---------ANAC46   ------>ZmHOX2a(2) ------->GT1                   --------->MYB52(1) --------->ARR11(3)       <---------ICU4        ---- ----ANAC58                   ----------->HVH21   <---------ARR11(3)       --------->YAB1       <---- ----ANAC58  --------->ATHB12 ----------->TGA1--------------------->WRI1  <---------YAB1   <---------   tgtgaaaacctagatcgattggaaacgagttaatgacggagagagcaccattgatcttaacgtctttgattagataatcatcgaacttatcgtcttttat  25365800                                    --------->MYB111(1)                                    --------->MYB59                                    --------->MYB46(2)                                    --------->MYB111(2)                                    <---------MYB46(3)                                   <---------MYB55(1)                                   <--------P                            ------>ZmHOX2a(1)                          --------->ARR14(2)                           --------->TOE2(3)                           <---------ARR14(2)                        <---------ARR14(2)                          <---------ANAC55(2)                     ==============HOX2a_HOX2a                      --------->ANAC58                    <------ZmHOX2a(2)----------->GT1                --------->ANAC58   ------>MYB46(1)                    ===============HOX2a_HOX2a                      --------->ANAC55(2)------>MYB83                   --------->ARR14(2)<------MYB46(1)               <---------LBD16   --------->MYB46(3)     <---------ALFIN1------>ZmHOX2a(2)  <-------TEIL              --------->MYB52(1) <---------MYB46(2) ----->YAB1        <---------ARR14(2)<------MYB83           --------->ANAC46         --------->AtMYB61 -----YAB1     <---------At4g35610<---------MYB52(1)        --------->ANAC58        --------->ANAC46 -DOF2   <----------DOF2--------->ARR14(2)                  --------->ANAC58      <-----------GT1   cagagccacaactttgcatcggatcgcatcctcatcggtaggtacaatcgacaaaactgtaaacgaaatcacggattcaaattttcaccaaaccaaaatc  25365900                                                  ------>NtERF2                                                 <---------RAP2.6(2)                                               <---------WRKY18(1)                                              ----------->HVH21                                        --------->DEAR3(1)                    <---------YAB1                                        ----------->HVH21              --------->TOE2(3)            <             <------MYB83              --------->At4g35610           <---------YAB1                 -             <------MYB46(1)           <---------At4g35610          --------->ARR14(2)             --             ----------->GT1   --------->TOE2(3)--------->RAP2.6(3) <---------ARR14(2) <---------ANAC46   aacgagtaagaaggaaggtgagaattgtggaaaccttgatcagcgaccttgacggcttcttcatatttagtatccttgatatgtttgtggagggaagtga  25366000            <---------ANAC58            <---------ANAC58   ------>ZmHOX2a(2)  <------ZmHOX2a(2) --------->ARR14(3) --------->AGP1 <---------ARR11(3)                                                                      ------->GAMYB --------->ARR14(2)                                                        --------->ANAC46 <---------ARR14(2)                                              <---------TOE2(3)    --------->MYB52(1) <---------ARR14(3)                                              <---------TOE1(3)    ----------->RAV1(1) --------->ARR11(3)                                          <----------DOF2    --------->ANAC46 ---------GLK1(1)                                          <---------At4g35610  --------->ANAC58 -------->GLK1(1)                    <----------DOF2       --------->At4g35610  --------->ANAC58 --------->ARR10        <---------ARR14(2)               <---------RAP2.6(2) <---------ZAT18   agagatcttcgattgctggagtcgaggttttggggttttctttcgatttgggagccatggctgcttcaaggtttctcagggcacgaaacaacagagaaga  25366100                    ----------->TBP                  <----------DOF2             <-----------GT1              <-----------TBP      --------->YAB1       <---------GLK1(2)                  --------->AHL20(2)--------->WOX13(1)       <---------ARR11(3)            <---------TOE2(3)    ------------>CBF   --------->ARR11(3)       <---------ARR14(2)         <---------WOX13(1)<---------MYB59<---------ARR11(3)  --------->YAB1       --------->ARR14(2)        <------------CBF  ----------->RAV1(2)       <---------ARR11(3)       --------->ARR11(3)   --------->MYB52(1)<-----------GT1 <---------ATHB12      ------>ZmHOX2a(1)   aaactggcagatttttgactctttaaaaatcaacagattgatgtttatatactacctgacttcaatcaaggtctgtgaagatgttcctaaaataacttat  25366200                                    --------->GLK1(2)                                   --------->YAB1                           --------->ATHB12                          --------->ICU4                          <---------YAB1     <---------ANAC58               <----------DOF2    <---------ATHB12     ----------->TBP              <---------DAG2  ------------>CBF   ---------->DOF2  --------->AHL20(2)   <-----------TBP   <---------At4g35610     <---------ANAC58  ----------->GT1 <----------DOF2     --------->At4g35610   <-----------GT1---------->DOF2                     -------   gggctttttatatgggccttttctgctcatgattcaataatctttttacttgaaagtataaaaagagattaaaaaactatttgaaacccattaagactca  25366300                                                                                --------->AHL20(2)                                                                                <---------AHL20(1)                                      ----------->TBP                           --------->AHL20(1)                                     <---------AHL20(1)                       <---------AHL20(1)                                     --------->AHL20(1)                       --------->ARR11(3)                                    =================================================================                                    <---------------AGL15                     --------->AHL20(1)                                 <---------AHL20(2)                           <---------ARR11(3)                                --------->AHL20(1)                        <---------AHL20(2)                                <---------AHL20(2)                       --------->AHL20(2)                           --------->AHL20(2)                           <---------YAB1                          --------->YAB1                              <---------AHL20(2)                         <---------YAB1                              --------->AHL20(2)                       <---------AHL20(2)                            --------->ICU4                      <---------AHL20(2)                          --------->AHL20(2)         --------->AHL20(2)<---------AHL20(2)                    --------->AHL20(1) ------->TEIL         --------->AHL20(2)      <---------GLK1(1)  <---------ARR11(3)             <---- ----->CBF      <----------DOF2 --------->AHL20(2)               <---------AHL20(1)         <--------   atgcatctaaatttaaaacttttatttattaaaatttaatatatatggagttctctcacatctacaaaatatttattaaaaatattttagaaattttcct  25366400                                                                                    <---------AHL20(1)                                                                                    --------->AHL20(1)                       <---------ANAC55(2)                                          <---------AHL20(2)                       <---------ANAC46                                             --------->AHL20(2)                     --------------->AGL15                                       --------->AHL20(2)                    <---------YAB1                                               <---------AHL20(2)                  --------->YAB1                                                 --------->AHL20(1)                  <---------ICU4                                            --------->AHL20(2)                 <---------YAB1                                        --------->YAB1               <---------AHL20(2)   --------->YAB1             --------->DAG2--------->AHL20(2) ====================================MADS_MADS                ---------->DOF2<---------AHL20(2) ------DOF2   --------->AHL20(2)   ----------->GT1    --------->ANAC55(2) --------->YAB1 ---GT1       --------->ICU4----------->GT1           <---------ANAC55(2)<---------YAB1            --   ttcaaatttagctatatttattattacttatagtaaaatgaaaataagttttgaatacataacaaaaagctaagtataataaataaaatattaacaacga  25366500                                                                              ----------->GT1                                                                             --------->ALFIN1                                                                          <---------AtMYB61                                                                          --------->DAG2             ---------->ID1                     <---------YAB1          ---------->DOF2            <-----------GT1                    --------->ARR11(3)      <------ZmHOX2a(1)  <-------TEIL                                 <---------ARR11(3)    --------->MYB59--------->DAG2 ------->CCA1(2)<----------DOF2 <---------TOE2(3)               <------ZmHOX2a(1)  ---------->DOF2   tatatacgtttatttttcctttcaaaactttgttaagttttgtgatcaatatcattgttttcaagaggagttaggaaaggtggataaaagtgatatagag  25366600  Previous    Next  AGI:  At1g67650.1    Description:  7S RNA binding. similar to 7S RNA binding [Arabidopsis thaliana] (TAIR:AT1G67680.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63819.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46686.1); contains InterPro domain Signal recognition particle, SRP72 subunit, RNA-binding; (InterPro:IPR013699) Range:  from: 25363322    to: 25366058    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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